Wall clock time and date at job start Tue Mar 31 2020 13:32:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86798 * 119.99865 * 2 1 4 4 H 1.48507 * 109.47143 * 239.99606 * 3 2 1 5 5 H 1.48502 * 109.47052 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47572 * 119.99450 * 3 2 1 7 7 C 1.38812 * 120.00404 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00142 * 180.02562 * 7 2 1 9 9 N 1.36944 * 120.00049 * 359.97438 * 7 2 1 10 10 C 1.49290 * 127.09838 * 0.02999 * 9 7 2 11 11 C 1.57751 * 106.66820 * 188.74222 * 10 9 7 12 12 C 1.52141 * 100.12169 * 23.22018 * 11 10 9 13 13 N 1.46499 * 111.09584 * 74.40427 * 12 11 10 14 14 C 1.34777 * 119.99665 * 78.63881 * 13 12 11 15 15 O 1.21733 * 120.00174 * 359.72127 * 14 13 12 16 16 C 1.46344 * 119.99612 * 179.72462 * 14 13 12 17 17 C 1.36738 * 125.43314 * 179.97438 * 16 14 13 18 18 C 1.37350 * 113.32779 * 179.97438 * 17 16 14 19 19 C 1.34205 * 115.04606 * 359.97438 * 18 17 16 20 20 F 1.35094 * 124.53844 * 179.97438 * 19 18 17 21 21 S 1.70612 * 110.91833 * 359.76180 * 19 18 17 22 22 C 1.51231 * 122.09561 * 208.58393 * 12 11 10 23 23 C 1.55693 * 104.61127 * 141.91949 * 22 12 11 24 24 C 1.56283 * 105.93275 * 352.75202 * 23 22 12 25 25 C 1.42693 * 127.10337 * 180.02562 * 9 7 2 26 26 H 1.09005 * 107.77446 * 256.39161 * 25 9 7 27 27 H 0.96993 * 120.00447 * 0.02562 * 1 2 3 28 28 H 1.09002 * 110.05356 * 307.89610 * 10 9 7 29 29 H 1.09008 * 110.05176 * 69.31719 * 10 9 7 30 30 H 1.08995 * 111.09991 * 265.72197 * 11 10 9 31 31 H 1.08997 * 111.84155 * 141.02004 * 11 10 9 32 32 H 0.97001 * 119.99790 * 258.35593 * 13 12 11 33 33 H 1.07998 * 123.33424 * 359.93674 * 17 16 14 34 34 H 1.08000 * 122.47207 * 179.97438 * 18 17 16 35 35 H 1.09004 * 110.41345 * 260.70419 * 22 12 11 36 36 H 1.09004 * 110.41164 * 23.02429 * 22 12 11 37 37 H 1.08993 * 110.15824 * 111.86823 * 23 22 12 38 38 H 1.09001 * 110.16144 * 233.63703 * 23 22 12 39 39 H 1.09000 * 110.97283 * 93.85910 * 24 23 22 40 40 H 1.09002 * 110.97132 * 217.58857 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2851 2.7464 -0.0006 6 1 3.1038 1.6966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3257 -2.3881 0.0016 10 6 -0.1558 -2.5727 0.0017 11 6 -0.4201 -4.1107 0.2328 12 6 0.8807 -4.5058 0.9158 13 7 0.9157 -4.0278 2.3002 14 6 0.2425 -4.6928 3.2599 15 8 -0.3988 -5.6877 2.9755 16 6 0.2824 -4.2188 4.6438 17 6 -0.3565 -4.8047 5.7013 18 6 -0.1487 -4.1521 6.8918 19 6 0.6357 -3.0659 6.8149 20 9 0.9650 -2.2830 7.8655 21 16 1.1662 -2.8097 5.2137 22 6 1.4533 -5.9014 0.8077 23 6 2.9920 -5.6875 0.7038 24 6 3.2027 -4.1447 0.5705 25 6 1.8810 -3.7026 0.0028 26 1 1.7855 -4.1050 -1.0057 27 1 -0.4850 0.8399 -0.0004 28 1 -0.6045 -1.9941 0.8091 29 1 -0.5713 -2.2609 -0.9567 30 1 -0.5415 -4.6347 -0.7152 31 1 -1.2753 -4.2814 0.8867 32 1 1.4268 -3.2351 2.5267 33 1 -0.9648 -5.6924 5.6093 34 1 -0.5844 -4.4883 7.8211 35 1 1.2095 -6.4823 1.6972 36 1 1.0758 -6.3990 -0.0856 37 1 3.4842 -6.0575 1.6031 38 1 3.3836 -6.1975 -0.1764 39 1 3.3803 -3.6896 1.5448 40 1 4.0182 -3.9203 -0.1171 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992520441.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:00 Heat of formation + Delta-G solvation = -1.227870 kcal Electronic energy + Delta-G solvation = -26028.887036 eV Core-core repulsion = 22272.180102 eV Total energy + Delta-G solvation = -3756.706934 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.105 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.20290 -40.55749 -38.60373 -37.13150 -34.43769 -33.17569 -31.77303 -30.22849 -29.08297 -26.96441 -25.91870 -24.87109 -24.10512 -22.09766 -20.54765 -19.96611 -19.62694 -19.09616 -18.60446 -16.77910 -16.52870 -16.25031 -16.10390 -15.65409 -14.98505 -14.62971 -14.56981 -14.38928 -14.19933 -13.97256 -13.61829 -13.17616 -12.68077 -12.40464 -12.38376 -12.15308 -11.92000 -11.46053 -11.41295 -11.05854 -11.04912 -10.94820 -10.83159 -10.57305 -10.36420 -10.09118 -9.99756 -9.76234 -9.72620 -9.26313 -8.89512 -8.82606 -8.73052 -8.52488 -6.93464 -5.80491 -3.15905 0.28103 0.92333 1.56799 2.15237 3.34355 3.36866 3.39876 3.41062 3.47389 4.16857 4.40172 4.58861 4.93329 5.13780 5.18199 5.20233 5.24479 5.43018 5.55238 5.65057 5.68958 5.75678 5.86858 5.90670 5.97893 6.06088 6.12520 6.19659 6.26673 6.34380 6.41248 6.45546 6.58570 6.75594 6.85707 7.08483 7.45661 7.53606 7.71316 7.88502 8.13227 8.48343 9.07108 9.73441 10.41948 11.31438 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.010533 B = 0.005544 C = 0.004193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2657.635472 B = 5049.175816 C = 6676.265872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.002 4.002 3 Si 0.909 3.091 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.234 4.234 8 H 0.079 0.921 9 N -0.586 5.586 10 C 0.177 3.823 11 C -0.141 4.141 12 C 0.131 3.869 13 N -0.683 5.683 14 C 0.589 3.411 15 O -0.534 6.534 16 C -0.251 4.251 17 C -0.046 4.046 18 C -0.183 4.183 19 C -0.034 4.034 20 F -0.102 7.102 21 S 0.245 5.755 22 C -0.116 4.116 23 C -0.117 4.117 24 C -0.115 4.115 25 C 0.159 3.841 26 H 0.026 0.974 27 H 0.254 0.746 28 H 0.065 0.935 29 H 0.037 0.963 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.402 0.598 33 H 0.162 0.838 34 H 0.155 0.845 35 H 0.077 0.923 36 H 0.071 0.929 37 H 0.058 0.942 38 H 0.062 0.938 39 H 0.064 0.936 40 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.342 -9.547 9.619 13.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.199 4.199 3 Si 0.739 3.261 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.362 4.362 8 H 0.097 0.903 9 N -0.309 5.309 10 C 0.054 3.946 11 C -0.180 4.180 12 C 0.044 3.956 13 N -0.333 5.333 14 C 0.374 3.626 15 O -0.414 6.414 16 C -0.372 4.372 17 C -0.079 4.079 18 C -0.216 4.216 19 C -0.172 4.172 20 F -0.081 7.081 21 S 0.510 5.490 22 C -0.154 4.154 23 C -0.155 4.155 24 C -0.154 4.154 25 C 0.048 3.952 26 H 0.043 0.957 27 H 0.065 0.935 28 H 0.083 0.917 29 H 0.055 0.945 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.239 0.761 33 H 0.180 0.820 34 H 0.172 0.828 35 H 0.095 0.905 36 H 0.090 0.910 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.788 -8.821 8.721 12.714 hybrid contribution -0.243 0.572 1.170 1.325 sum 2.545 -8.249 9.891 13.128 Atomic orbital electron populations 1.69893 1.04899 1.25401 1.56193 1.24792 0.95617 0.97644 1.01862 0.86262 0.78549 0.83341 0.77965 1.21139 1.21604 1.21084 1.18963 0.90265 0.82175 1.44822 0.90282 1.43690 1.01724 0.99303 1.86229 1.22295 0.83150 0.88299 1.00887 1.23065 0.96014 0.99702 0.99200 1.21612 0.98676 0.94431 0.80904 1.45647 1.50169 1.29877 1.07607 1.16731 0.79763 0.83531 0.82617 1.90790 1.42832 1.25874 1.81912 1.24766 1.10363 1.02915 0.99147 1.20419 0.98076 1.00228 0.89141 1.20243 1.03444 0.96593 1.01312 1.22066 1.07160 0.96987 0.91021 1.91519 1.91006 1.72270 1.53336 1.83931 1.45238 1.24833 0.95028 1.21923 0.94717 0.96012 1.02780 1.22823 0.95840 0.95845 1.01019 1.21838 0.97847 0.94626 1.01062 1.20862 0.91600 0.87355 0.95333 0.95706 0.93530 0.91655 0.94473 0.91378 0.91492 0.76131 0.82032 0.82759 0.90484 0.91016 0.92267 0.91880 0.91731 0.91658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.58 10.55 55.49 0.59 -25.00 16 2 C 0.00 -0.06 5.49 -17.43 -0.10 -0.15 16 3 Si 0.91 21.07 29.55 -169.99 -5.02 16.04 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.23 -6.01 10.28 -15.06 -0.15 -6.16 16 8 H 0.08 1.96 7.83 -52.48 -0.41 1.55 16 9 N -0.59 -13.69 3.04 -161.73 -0.49 -14.18 16 10 C 0.18 4.11 5.37 0.11 0.00 4.11 16 11 C -0.14 -2.70 6.41 -24.57 -0.16 -2.86 16 12 C 0.13 2.34 0.42 -130.72 -0.06 2.28 16 13 N -0.68 -11.91 4.31 -47.98 -0.21 -12.12 16 14 C 0.59 9.98 7.17 -13.00 -0.09 9.89 16 15 O -0.53 -10.06 14.96 5.16 0.08 -9.98 16 16 C -0.25 -3.62 6.44 -36.87 -0.24 -3.86 16 17 C -0.05 -0.57 10.00 -40.45 -0.40 -0.98 16 18 C -0.18 -2.04 10.16 -41.33 -0.42 -2.46 16 19 C -0.03 -0.43 8.10 29.31 0.24 -0.19 16 20 F -0.10 -1.29 17.32 2.25 0.04 -1.25 16 21 S 0.24 3.23 22.14 -107.50 -2.38 0.85 16 22 C -0.12 -1.79 5.97 -26.19 -0.16 -1.95 16 23 C -0.12 -1.62 6.94 -23.53 -0.16 -1.78 16 24 C -0.12 -1.86 6.45 -26.22 -0.17 -2.03 16 25 C 0.16 3.06 2.61 -68.75 -0.18 2.89 16 26 H 0.03 0.51 7.99 -51.93 -0.42 0.10 16 27 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 28 H 0.07 1.68 7.05 -51.93 -0.37 1.32 16 29 H 0.04 0.94 7.98 -51.92 -0.41 0.53 16 30 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 31 H 0.07 1.31 7.80 -51.93 -0.41 0.90 16 32 H 0.40 7.20 7.05 -40.82 -0.29 6.92 16 33 H 0.16 1.79 8.06 -52.49 -0.42 1.37 16 34 H 0.15 1.32 8.06 -52.49 -0.42 0.90 16 35 H 0.08 1.26 6.19 -51.93 -0.32 0.94 16 36 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.06 1.06 7.51 -51.93 -0.39 0.67 16 40 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 339.58 15.07 5.12 5.12 Total: -1.00 -28.53 339.58 -9.44 -37.96 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -5.11 Total: 5.81 kcal Atomic # 6 Polarization: -1.20 SS G_CDS: -2.05 Total: -3.25 kcal Atomic # 7 Polarization: -51.18 SS G_CDS: -0.11 Total: -51.30 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: 0.08 Total: -9.98 kcal Atomic # 9 Polarization: -1.29 SS G_CDS: 0.04 Total: -1.25 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 16 Polarization: 3.23 SS G_CDS: -2.38 Total: 0.85 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -28.53 -9.44 -37.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992520441.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.737 kcal (2) G-P(sol) polarization free energy of solvation -28.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds