Wall clock time and date at job start Tue Mar 31 2020 13:31:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86798 * 119.99865 * 2 1 4 4 H 1.48507 * 109.47143 * 239.99606 * 3 2 1 5 5 H 1.48502 * 109.47052 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47572 * 119.99450 * 3 2 1 7 7 C 1.38812 * 120.00404 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00142 * 180.02562 * 7 2 1 9 9 N 1.36944 * 120.00049 * 359.97438 * 7 2 1 10 10 C 1.49290 * 127.09838 * 0.02999 * 9 7 2 11 11 C 1.57751 * 106.66820 * 188.74222 * 10 9 7 12 12 C 1.52141 * 100.12169 * 23.22018 * 11 10 9 13 13 N 1.46499 * 111.09584 * 74.40427 * 12 11 10 14 14 C 1.34777 * 119.99665 * 78.63881 * 13 12 11 15 15 O 1.21733 * 120.00174 * 359.72127 * 14 13 12 16 16 C 1.46344 * 119.99612 * 179.72462 * 14 13 12 17 17 C 1.36738 * 125.43314 * 179.97438 * 16 14 13 18 18 C 1.37350 * 113.32779 * 179.97438 * 17 16 14 19 19 C 1.34205 * 115.04606 * 359.97438 * 18 17 16 20 20 F 1.35094 * 124.53844 * 179.97438 * 19 18 17 21 21 S 1.70612 * 110.91833 * 359.76180 * 19 18 17 22 22 C 1.51231 * 122.09561 * 208.58393 * 12 11 10 23 23 C 1.55693 * 104.61127 * 141.91949 * 22 12 11 24 24 C 1.56283 * 105.93275 * 352.75202 * 23 22 12 25 25 C 1.42693 * 127.10337 * 180.02562 * 9 7 2 26 26 H 1.09005 * 107.77446 * 256.39161 * 25 9 7 27 27 H 0.96993 * 120.00447 * 0.02562 * 1 2 3 28 28 H 1.09002 * 110.05356 * 307.89610 * 10 9 7 29 29 H 1.09008 * 110.05176 * 69.31719 * 10 9 7 30 30 H 1.08995 * 111.09991 * 265.72197 * 11 10 9 31 31 H 1.08997 * 111.84155 * 141.02004 * 11 10 9 32 32 H 0.97001 * 119.99790 * 258.35593 * 13 12 11 33 33 H 1.07998 * 123.33424 * 359.93674 * 17 16 14 34 34 H 1.08000 * 122.47207 * 179.97438 * 18 17 16 35 35 H 1.09004 * 110.41345 * 260.70419 * 22 12 11 36 36 H 1.09004 * 110.41164 * 23.02429 * 22 12 11 37 37 H 1.08993 * 110.15824 * 111.86823 * 23 22 12 38 38 H 1.09001 * 110.16144 * 233.63703 * 23 22 12 39 39 H 1.09000 * 110.97283 * 93.85910 * 24 23 22 40 40 H 1.09002 * 110.97132 * 217.58857 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2851 2.7464 -0.0006 6 1 3.1038 1.6966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3257 -2.3881 0.0016 10 6 -0.1558 -2.5727 0.0017 11 6 -0.4201 -4.1107 0.2328 12 6 0.8807 -4.5058 0.9158 13 7 0.9157 -4.0278 2.3002 14 6 0.2425 -4.6928 3.2599 15 8 -0.3988 -5.6877 2.9755 16 6 0.2824 -4.2188 4.6438 17 6 -0.3565 -4.8047 5.7013 18 6 -0.1487 -4.1521 6.8918 19 6 0.6357 -3.0659 6.8149 20 9 0.9650 -2.2830 7.8655 21 16 1.1662 -2.8097 5.2137 22 6 1.4533 -5.9014 0.8077 23 6 2.9920 -5.6875 0.7038 24 6 3.2027 -4.1447 0.5705 25 6 1.8810 -3.7026 0.0028 26 1 1.7855 -4.1050 -1.0057 27 1 -0.4850 0.8399 -0.0004 28 1 -0.6045 -1.9941 0.8091 29 1 -0.5713 -2.2609 -0.9567 30 1 -0.5415 -4.6347 -0.7152 31 1 -1.2753 -4.2814 0.8867 32 1 1.4268 -3.2351 2.5267 33 1 -0.9648 -5.6924 5.6093 34 1 -0.5844 -4.4883 7.8211 35 1 1.2095 -6.4823 1.6972 36 1 1.0758 -6.3990 -0.0856 37 1 3.4842 -6.0575 1.6031 38 1 3.3836 -6.1975 -0.1764 39 1 3.3803 -3.6896 1.5448 40 1 4.0182 -3.9203 -0.1171 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992520441.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:59 Heat of formation + Delta-G solvation = -16.875047 kcal Electronic energy + Delta-G solvation = -26029.565548 eV Core-core repulsion = 22272.180102 eV Total energy + Delta-G solvation = -3757.385447 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.105 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.20313 -41.98742 -39.88916 -38.26742 -36.11801 -34.53973 -33.56803 -31.79453 -30.27323 -28.52445 -27.34932 -26.06828 -25.83747 -23.29829 -22.14437 -21.34977 -20.81970 -20.43111 -19.86007 -18.35429 -17.91135 -17.50075 -17.10995 -17.07201 -16.37261 -16.28436 -15.74285 -15.69346 -15.59868 -15.44183 -15.10666 -14.31252 -14.11268 -14.05194 -13.51465 -13.46654 -13.15146 -13.04507 -12.93348 -12.84018 -12.61283 -12.22663 -12.11242 -12.08284 -12.02604 -11.79833 -11.55826 -11.38026 -11.14647 -10.78599 -10.66860 -10.09555 -9.86043 -9.76061 -8.86537 -7.82612 -5.18448 -0.76592 -0.09932 0.54603 1.15911 1.49044 1.50334 1.56467 2.09128 2.19364 2.51282 3.10061 3.19362 3.37317 3.65971 3.82178 3.89067 4.10864 4.16530 4.25455 4.27261 4.39692 4.42995 4.59444 4.62871 4.72766 4.80297 4.90786 4.94916 4.96627 5.07256 5.13262 5.14761 5.24172 5.27465 5.49880 5.56498 5.60092 5.66231 5.77102 6.19119 6.51729 7.05913 7.13756 7.78119 8.49889 9.28692 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.010533 B = 0.005544 C = 0.004193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2657.635472 B = 5049.175816 C = 6676.265872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.059 4.059 3 Si 0.969 3.031 4 H -0.280 1.280 5 H -0.301 1.301 6 H -0.274 1.274 7 C -0.233 4.233 8 H 0.088 0.912 9 N -0.599 5.599 10 C 0.188 3.812 11 C -0.129 4.129 12 C 0.137 3.863 13 N -0.688 5.688 14 C 0.590 3.410 15 O -0.557 6.557 16 C -0.278 4.278 17 C -0.029 4.029 18 C -0.171 4.171 19 C -0.033 4.033 20 F -0.102 7.102 21 S 0.229 5.771 22 C -0.111 4.111 23 C -0.104 4.104 24 C -0.112 4.112 25 C 0.147 3.853 26 H 0.023 0.977 27 H 0.246 0.754 28 H 0.031 0.969 29 H 0.003 0.997 30 H 0.084 0.916 31 H 0.061 0.939 32 H 0.399 0.601 33 H 0.177 0.823 34 H 0.188 0.812 35 H 0.071 0.929 36 H 0.084 0.916 37 H 0.074 0.926 38 H 0.085 0.915 39 H 0.060 0.940 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.636 -11.132 10.887 15.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.252 4.252 3 Si 0.798 3.202 4 H -0.207 1.207 5 H -0.227 1.227 6 H -0.200 1.200 7 C -0.361 4.361 8 H 0.106 0.894 9 N -0.322 5.322 10 C 0.064 3.936 11 C -0.168 4.168 12 C 0.050 3.950 13 N -0.337 5.337 14 C 0.377 3.623 15 O -0.438 6.438 16 C -0.399 4.399 17 C -0.062 4.062 18 C -0.203 4.203 19 C -0.171 4.171 20 F -0.081 7.081 21 S 0.495 5.505 22 C -0.149 4.149 23 C -0.142 4.142 24 C -0.150 4.150 25 C 0.038 3.962 26 H 0.040 0.960 27 H 0.055 0.945 28 H 0.049 0.951 29 H 0.022 0.978 30 H 0.103 0.897 31 H 0.080 0.920 32 H 0.234 0.766 33 H 0.194 0.806 34 H 0.205 0.795 35 H 0.090 0.910 36 H 0.102 0.898 37 H 0.093 0.907 38 H 0.104 0.896 39 H 0.079 0.921 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 4.122 -10.434 9.994 15.024 hybrid contribution -0.676 1.045 0.814 1.487 sum 3.447 -9.389 10.808 14.726 Atomic orbital electron populations 1.70107 1.06269 1.25248 1.58115 1.25520 0.96308 1.00640 1.02729 0.85301 0.77209 0.79458 0.78274 1.20651 1.22727 1.19971 1.19328 0.90832 0.83086 1.42885 0.89444 1.43800 1.01920 1.00417 1.86089 1.21978 0.83265 0.90652 0.97715 1.22923 0.96907 0.96741 1.00211 1.21601 0.96842 0.95725 0.80870 1.45681 1.50472 1.29876 1.07640 1.16967 0.78939 0.83022 0.83375 1.90766 1.43692 1.26793 1.82564 1.24564 1.12626 1.04262 0.98434 1.20698 0.96671 1.00067 0.88792 1.20512 1.02305 0.95450 1.02069 1.22146 1.07268 0.97293 0.90426 1.91524 1.91043 1.72385 1.53174 1.83970 1.45629 1.24803 0.96143 1.21921 0.95840 0.94033 1.03135 1.22764 0.94545 0.93917 1.02943 1.21854 0.96130 0.96321 1.00694 1.21072 0.94122 0.85322 0.95679 0.96011 0.94521 0.95064 0.97829 0.89736 0.92021 0.76565 0.80584 0.79517 0.90996 0.89782 0.90678 0.89587 0.92140 0.90879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.07 10.55 21.65 0.23 -54.85 16 2 C -0.06 -3.16 5.49 84.86 0.47 -2.70 16 3 Si 0.97 43.91 29.55 68.60 2.03 45.94 16 4 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 5 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 6 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 7 C -0.23 -12.04 10.28 84.03 0.86 -11.18 16 8 H 0.09 4.29 7.83 -2.91 -0.02 4.26 16 9 N -0.60 -28.45 3.04 -665.59 -2.02 -30.47 16 10 C 0.19 9.09 5.37 87.52 0.47 9.56 16 11 C -0.13 -4.99 6.41 31.99 0.21 -4.78 16 12 C 0.14 4.78 0.42 4.32 0.00 4.79 16 13 N -0.69 -23.86 4.31 -423.90 -1.83 -25.69 16 14 C 0.59 19.72 7.17 86.35 0.62 20.34 16 15 O -0.56 -20.51 14.96 -4.45 -0.07 -20.57 16 16 C -0.28 -7.77 6.44 24.03 0.15 -7.62 16 17 C -0.03 -0.66 10.00 21.71 0.22 -0.45 16 18 C -0.17 -3.31 10.16 21.14 0.21 -3.10 16 19 C -0.03 -0.76 8.10 66.90 0.54 -0.22 16 20 F -0.10 -2.39 17.32 44.97 0.78 -1.61 16 21 S 0.23 5.93 22.14 -56.49 -1.25 4.68 16 22 C -0.11 -3.18 5.97 30.95 0.18 -3.00 16 23 C -0.10 -2.54 6.94 32.67 0.23 -2.31 16 24 C -0.11 -3.39 6.45 30.92 0.20 -3.20 16 25 C 0.15 5.57 2.61 46.45 0.12 5.70 16 26 H 0.02 0.87 7.99 -2.38 -0.02 0.85 16 27 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 28 H 0.03 1.70 7.05 -2.39 -0.02 1.68 16 29 H 0.00 0.19 7.98 -2.38 -0.02 0.17 16 30 H 0.08 2.96 8.14 -2.39 -0.02 2.94 16 31 H 0.06 2.44 7.80 -2.39 -0.02 2.42 16 32 H 0.40 14.42 7.05 -92.71 -0.65 13.76 16 33 H 0.18 3.44 8.06 -2.91 -0.02 3.42 16 34 H 0.19 2.41 8.06 -2.91 -0.02 2.38 16 35 H 0.07 2.19 6.19 -2.39 -0.01 2.18 16 36 H 0.08 2.21 8.14 -2.38 -0.02 2.19 16 37 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.09 1.76 8.14 -2.39 -0.02 1.75 16 39 H 0.06 1.89 7.51 -2.39 -0.02 1.87 16 40 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -62.71 339.58 2.78 -59.93 By element: Atomic # 1 Polarization: 20.38 SS G_CDS: 0.42 Total: 20.80 kcal Atomic # 6 Polarization: -2.65 SS G_CDS: 4.49 Total: 1.84 kcal Atomic # 7 Polarization: -107.38 SS G_CDS: -3.62 Total: -111.01 kcal Atomic # 8 Polarization: -20.51 SS G_CDS: -0.07 Total: -20.57 kcal Atomic # 9 Polarization: -2.39 SS G_CDS: 0.78 Total: -1.61 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Atomic # 16 Polarization: 5.93 SS G_CDS: -1.25 Total: 4.68 kcal Total: -62.71 2.78 -59.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992520441.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.053 kcal (2) G-P(sol) polarization free energy of solvation -62.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds