Wall clock time and date at job start Tue Mar 31 2020 13:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86808 * 119.99630 * 2 1 4 4 H 1.48495 * 109.46991 * 274.42207 * 3 2 1 5 5 H 1.48504 * 109.46876 * 34.42535 * 3 2 1 6 6 H 1.48494 * 109.47154 * 154.42335 * 3 2 1 7 7 C 1.38803 * 120.00544 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00409 * 170.07212 * 7 2 1 9 9 N 1.36946 * 119.99915 * 350.06113 * 7 2 1 10 10 C 1.47370 * 125.57657 * 348.77727 * 9 7 2 11 11 C 1.54873 * 104.81789 * 204.68455 * 10 9 7 12 12 C 1.54913 * 101.76530 * 322.92470 * 11 10 9 13 13 N 1.46497 * 112.33433 * 273.79023 * 12 11 10 14 14 C 1.34783 * 119.99887 * 295.63740 * 13 12 11 15 15 O 1.21742 * 119.99619 * 0.02562 * 14 13 12 16 16 C 1.46339 * 120.00117 * 180.02562 * 14 13 12 17 17 C 1.36733 * 125.43493 * 179.72758 * 16 14 13 18 18 C 1.37346 * 113.32913 * 179.80070 * 17 16 14 19 19 C 1.34199 * 115.04597 * 0.48642 * 18 17 16 20 20 F 1.35104 * 124.54403 * 179.75337 * 19 18 17 21 21 S 1.70615 * 110.91874 * 359.72883 * 19 18 17 22 22 C 1.53930 * 109.06974 * 148.14845 * 12 11 10 23 23 C 1.54219 * 106.50518 * 246.90325 * 22 12 11 24 24 C 1.54757 * 104.27759 * 24.96437 * 23 22 12 25 25 C 1.46976 * 125.57990 * 168.76668 * 9 7 2 26 26 H 1.09004 * 112.53934 * 301.40309 * 25 9 7 27 27 H 0.96998 * 120.00414 * 0.02562 * 1 2 3 28 28 H 1.09000 * 110.37091 * 85.85258 * 10 9 7 29 29 H 1.08994 * 110.37016 * 323.51789 * 10 9 7 30 30 H 1.08995 * 110.96799 * 204.80679 * 11 10 9 31 31 H 1.08994 * 110.96582 * 81.04135 * 11 10 9 32 32 H 0.96999 * 120.00678 * 115.64767 * 13 12 11 33 33 H 1.08005 * 123.33378 * 359.97438 * 17 16 14 34 34 H 1.08006 * 122.47442 * 180.19654 * 18 17 16 35 35 H 1.08996 * 110.13590 * 127.63008 * 22 12 11 36 36 H 1.09008 * 110.06711 * 6.13304 * 22 12 11 37 37 H 1.09002 * 110.49040 * 266.23037 * 23 22 12 38 38 H 1.08993 * 110.49523 * 143.70901 * 23 22 12 39 39 H 1.09002 * 110.66384 * 80.55336 * 24 23 22 40 40 H 1.09001 * 110.67113 * 203.69380 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4041 2.1005 -1.3959 5 1 1.4973 2.6239 0.7915 6 1 3.5913 1.4152 0.6044 7 6 2.0103 -1.2020 0.0005 8 1 3.0782 -1.2091 -0.1607 9 7 1.3411 -2.3791 0.2058 10 6 -0.0536 -2.5035 0.6652 11 6 -0.1286 -3.9005 1.3296 12 6 0.7934 -4.7381 0.4087 13 7 0.0794 -5.2796 -0.7502 14 6 -0.9119 -6.1754 -0.5728 15 8 -1.2141 -6.5342 0.5506 16 6 -1.6248 -6.7168 -1.7305 17 6 -2.6402 -7.6311 -1.6797 18 6 -3.1347 -7.9640 -2.9171 19 6 -2.5379 -7.3512 -3.9511 20 9 -2.8675 -7.5401 -5.2476 21 16 -1.3074 -6.3009 -3.4090 22 6 1.4809 -5.8318 1.2458 23 6 2.9832 -5.4847 1.2713 24 6 3.0257 -3.9556 1.0364 25 6 1.8962 -3.7249 0.0036 26 1 2.2411 -3.8855 -1.0178 27 1 -0.4851 0.8400 -0.0004 28 1 -0.7382 -2.4487 -0.1812 29 1 -0.2845 -1.7249 1.3921 30 1 -1.1483 -4.2852 1.3147 31 1 0.2604 -3.8697 2.3473 32 1 0.3200 -4.9936 -1.6453 33 1 -3.0180 -8.0479 -0.7578 34 1 -3.9410 -8.6705 -3.0485 35 1 1.3311 -6.8076 0.7838 36 1 1.0810 -5.8334 2.2599 37 1 3.5094 -6.0081 0.4730 38 1 3.4162 -5.7342 2.2399 39 1 2.8167 -3.4184 1.9615 40 1 3.9898 -3.6561 0.6256 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992520445.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:07 Heat of formation + Delta-G solvation = -15.901118 kcal Electronic energy + Delta-G solvation = -25531.888696 eV Core-core repulsion = 21774.545482 eV Total energy + Delta-G solvation = -3757.343214 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.105 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -49.33987 -40.30162 -38.59150 -37.27645 -34.26733 -33.54888 -31.55426 -30.23113 -29.17914 -26.77065 -26.24378 -24.88915 -23.85577 -22.19908 -20.54436 -20.04763 -19.80339 -18.85782 -18.69508 -17.07465 -16.80236 -16.34136 -16.24011 -15.65374 -15.02909 -14.78506 -14.72673 -14.47267 -14.09340 -13.64202 -13.54113 -13.10395 -12.93250 -12.54614 -12.30523 -12.20313 -11.88009 -11.71649 -11.25855 -11.23843 -11.07375 -10.77929 -10.71559 -10.56668 -10.23392 -10.21311 -9.93501 -9.87018 -9.70794 -9.60827 -9.03783 -8.97023 -8.67897 -8.56500 -6.84246 -5.77373 -3.11371 0.12771 0.75288 1.39095 2.01836 3.18953 3.26059 3.37411 3.43986 3.45548 4.03241 4.45867 4.67577 4.93032 5.01048 5.05307 5.10177 5.27556 5.47983 5.53166 5.60466 5.71193 5.79822 5.81610 5.92649 5.93893 6.04708 6.09620 6.17950 6.30986 6.37582 6.47990 6.53918 6.71059 6.73466 6.91947 7.05151 7.49415 7.57855 7.64659 7.76952 8.22267 8.29086 9.15829 9.78133 10.45044 11.35071 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.014688 B = 0.003860 C = 0.003368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.846292 B = 7251.534668 C = 8310.724859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.004 4.004 3 Si 0.908 3.092 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.229 4.229 8 H 0.076 0.924 9 N -0.593 5.593 10 C 0.174 3.826 11 C -0.144 4.144 12 C 0.161 3.839 13 N -0.698 5.698 14 C 0.590 3.410 15 O -0.522 6.522 16 C -0.251 4.251 17 C -0.042 4.042 18 C -0.181 4.181 19 C -0.029 4.029 20 F -0.101 7.101 21 S 0.232 5.768 22 C -0.110 4.110 23 C -0.125 4.125 24 C -0.129 4.129 25 C 0.161 3.839 26 H 0.047 0.953 27 H 0.253 0.747 28 H 0.025 0.975 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.397 0.603 33 H 0.164 0.836 34 H 0.157 0.843 35 H 0.060 0.940 36 H 0.072 0.928 37 H 0.058 0.942 38 H 0.060 0.940 39 H 0.074 0.926 40 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.190 -15.903 -4.752 16.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.201 4.201 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.358 4.358 8 H 0.094 0.906 9 N -0.317 5.317 10 C 0.049 3.951 11 C -0.183 4.183 12 C 0.075 3.925 13 N -0.347 5.347 14 C 0.375 3.625 15 O -0.400 6.400 16 C -0.372 4.372 17 C -0.074 4.074 18 C -0.214 4.214 19 C -0.167 4.167 20 F -0.080 7.080 21 S 0.497 5.503 22 C -0.149 4.149 23 C -0.163 4.163 24 C -0.169 4.169 25 C 0.053 3.947 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.043 0.957 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.232 0.768 33 H 0.181 0.819 34 H 0.174 0.826 35 H 0.079 0.921 36 H 0.090 0.910 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.093 0.907 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.460 -14.929 -4.754 15.735 hybrid contribution -0.740 0.020 -0.311 0.803 sum -2.200 -14.909 -5.065 15.898 Atomic orbital electron populations 1.69967 1.04992 1.25230 1.55989 1.24822 0.95538 0.97795 1.01938 0.86173 0.78827 0.83681 0.77478 1.21669 1.21661 1.20566 1.18972 0.91126 0.82629 1.43030 0.90633 1.44493 1.10615 0.99202 1.77435 1.21410 0.85688 0.91411 0.96541 1.23346 0.98904 0.97994 0.98085 1.21754 0.92565 0.92744 0.85429 1.45803 1.35501 1.43159 1.10241 1.16717 0.79521 0.79203 0.87027 1.90837 1.65808 1.60109 1.23254 1.24711 1.07272 1.08912 0.96327 1.20463 0.93522 0.94790 0.98663 1.20276 1.04861 1.05292 0.90982 1.21992 1.05234 1.06956 0.82518 1.91533 1.91236 1.93828 1.31399 1.83645 1.30253 1.38637 0.97813 1.22314 0.94921 0.97485 1.00144 1.22365 0.95738 0.97351 1.00851 1.22939 0.99267 0.93922 1.00803 1.21777 0.90956 0.85871 0.96080 0.93575 0.93696 0.95663 0.91404 0.91334 0.91148 0.76849 0.81855 0.82569 0.92150 0.90957 0.92299 0.92150 0.90711 0.92231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.25 10.74 55.49 0.60 -25.65 16 2 C 0.00 -0.11 5.39 -17.43 -0.09 -0.20 16 3 Si 0.91 21.52 29.57 -169.99 -5.03 16.50 16 4 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.23 -6.07 9.96 -15.06 -0.15 -6.22 16 8 H 0.08 1.94 7.85 -52.49 -0.41 1.53 16 9 N -0.59 -14.23 3.03 -161.13 -0.49 -14.71 16 10 C 0.17 4.14 5.41 -2.58 -0.01 4.13 16 11 C -0.14 -2.83 5.75 -24.73 -0.14 -2.97 16 12 C 0.16 2.81 0.75 -129.19 -0.10 2.71 16 13 N -0.70 -11.00 5.25 -46.57 -0.24 -11.24 16 14 C 0.59 9.17 6.95 -13.00 -0.09 9.08 16 15 O -0.52 -9.34 14.71 5.15 0.08 -9.26 16 16 C -0.25 -3.19 6.44 -36.87 -0.24 -3.43 16 17 C -0.04 -0.46 10.00 -40.45 -0.40 -0.87 16 18 C -0.18 -1.76 10.16 -41.33 -0.42 -2.18 16 19 C -0.03 -0.31 8.10 29.31 0.24 -0.07 16 20 F -0.10 -1.11 17.32 2.25 0.04 -1.07 16 21 S 0.23 2.51 22.14 -107.50 -2.38 0.13 16 22 C -0.11 -1.71 5.25 -25.61 -0.13 -1.84 16 23 C -0.12 -1.78 6.83 -25.17 -0.17 -1.95 16 24 C -0.13 -2.23 6.21 -24.87 -0.15 -2.39 16 25 C 0.16 3.12 3.65 -65.60 -0.24 2.88 16 26 H 0.05 0.89 7.99 -51.93 -0.42 0.47 16 27 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 28 H 0.03 0.66 8.06 -51.93 -0.42 0.24 16 29 H 0.07 1.81 6.99 -51.93 -0.36 1.45 16 30 H 0.07 1.36 6.82 -51.93 -0.35 1.01 16 31 H 0.07 1.35 7.62 -51.93 -0.40 0.96 16 32 H 0.40 5.76 7.61 -40.82 -0.31 5.45 16 33 H 0.16 1.62 8.06 -52.48 -0.42 1.20 16 34 H 0.16 1.14 8.06 -52.48 -0.42 0.72 16 35 H 0.06 0.92 7.45 -51.93 -0.39 0.53 16 36 H 0.07 1.15 7.38 -51.92 -0.38 0.77 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.07 1.42 8.09 -51.93 -0.42 1.00 16 40 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 LS Contribution 339.63 15.07 5.12 5.12 Total: -1.00 -29.80 339.63 -9.53 -39.33 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -5.11 Total: 4.20 kcal Atomic # 6 Polarization: -1.21 SS G_CDS: -2.11 Total: -3.32 kcal Atomic # 7 Polarization: -51.47 SS G_CDS: -0.14 Total: -51.61 kcal Atomic # 8 Polarization: -9.34 SS G_CDS: 0.08 Total: -9.26 kcal Atomic # 9 Polarization: -1.11 SS G_CDS: 0.04 Total: -1.07 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.03 Total: 16.50 kcal Atomic # 16 Polarization: 2.51 SS G_CDS: -2.38 Total: 0.13 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -29.80 -9.53 -39.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992520445.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.428 kcal (2) G-P(sol) polarization free energy of solvation -29.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds