Wall clock time and date at job start Tue Mar 31 2020 13:32:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86808 * 119.99630 * 2 1 4 4 H 1.48495 * 109.46991 * 274.42207 * 3 2 1 5 5 H 1.48504 * 109.46876 * 34.42535 * 3 2 1 6 6 H 1.48494 * 109.47154 * 154.42335 * 3 2 1 7 7 C 1.38803 * 120.00544 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00409 * 170.07212 * 7 2 1 9 9 N 1.36946 * 119.99915 * 350.06113 * 7 2 1 10 10 C 1.47370 * 125.57657 * 348.77727 * 9 7 2 11 11 C 1.54873 * 104.81789 * 204.68455 * 10 9 7 12 12 C 1.54913 * 101.76530 * 322.92470 * 11 10 9 13 13 N 1.46497 * 112.33433 * 273.79023 * 12 11 10 14 14 C 1.34783 * 119.99887 * 295.63740 * 13 12 11 15 15 O 1.21742 * 119.99619 * 0.02562 * 14 13 12 16 16 C 1.46339 * 120.00117 * 180.02562 * 14 13 12 17 17 C 1.36733 * 125.43493 * 179.72758 * 16 14 13 18 18 C 1.37346 * 113.32913 * 179.80070 * 17 16 14 19 19 C 1.34199 * 115.04597 * 0.48642 * 18 17 16 20 20 F 1.35104 * 124.54403 * 179.75337 * 19 18 17 21 21 S 1.70615 * 110.91874 * 359.72883 * 19 18 17 22 22 C 1.53930 * 109.06974 * 148.14845 * 12 11 10 23 23 C 1.54219 * 106.50518 * 246.90325 * 22 12 11 24 24 C 1.54757 * 104.27759 * 24.96437 * 23 22 12 25 25 C 1.46976 * 125.57990 * 168.76668 * 9 7 2 26 26 H 1.09004 * 112.53934 * 301.40309 * 25 9 7 27 27 H 0.96998 * 120.00414 * 0.02562 * 1 2 3 28 28 H 1.09000 * 110.37091 * 85.85258 * 10 9 7 29 29 H 1.08994 * 110.37016 * 323.51789 * 10 9 7 30 30 H 1.08995 * 110.96799 * 204.80679 * 11 10 9 31 31 H 1.08994 * 110.96582 * 81.04135 * 11 10 9 32 32 H 0.96999 * 120.00678 * 115.64767 * 13 12 11 33 33 H 1.08005 * 123.33378 * 359.97438 * 17 16 14 34 34 H 1.08006 * 122.47442 * 180.19654 * 18 17 16 35 35 H 1.08996 * 110.13590 * 127.63008 * 22 12 11 36 36 H 1.09008 * 110.06711 * 6.13304 * 22 12 11 37 37 H 1.09002 * 110.49040 * 266.23037 * 23 22 12 38 38 H 1.08993 * 110.49523 * 143.70901 * 23 22 12 39 39 H 1.09002 * 110.66384 * 80.55336 * 24 23 22 40 40 H 1.09001 * 110.67113 * 203.69380 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4041 2.1005 -1.3959 5 1 1.4973 2.6239 0.7915 6 1 3.5913 1.4152 0.6044 7 6 2.0103 -1.2020 0.0005 8 1 3.0782 -1.2091 -0.1607 9 7 1.3411 -2.3791 0.2058 10 6 -0.0536 -2.5035 0.6652 11 6 -0.1286 -3.9005 1.3296 12 6 0.7934 -4.7381 0.4087 13 7 0.0794 -5.2796 -0.7502 14 6 -0.9119 -6.1754 -0.5728 15 8 -1.2141 -6.5342 0.5506 16 6 -1.6248 -6.7168 -1.7305 17 6 -2.6402 -7.6311 -1.6797 18 6 -3.1347 -7.9640 -2.9171 19 6 -2.5379 -7.3512 -3.9511 20 9 -2.8675 -7.5401 -5.2476 21 16 -1.3074 -6.3009 -3.4090 22 6 1.4809 -5.8318 1.2458 23 6 2.9832 -5.4847 1.2713 24 6 3.0257 -3.9556 1.0364 25 6 1.8962 -3.7249 0.0036 26 1 2.2411 -3.8855 -1.0178 27 1 -0.4851 0.8400 -0.0004 28 1 -0.7382 -2.4487 -0.1812 29 1 -0.2845 -1.7249 1.3921 30 1 -1.1483 -4.2852 1.3147 31 1 0.2604 -3.8697 2.3473 32 1 0.3200 -4.9936 -1.6453 33 1 -3.0180 -8.0479 -0.7578 34 1 -3.9410 -8.6705 -3.0485 35 1 1.3311 -6.8076 0.7838 36 1 1.0810 -5.8334 2.2599 37 1 3.5094 -6.0081 0.4730 38 1 3.4162 -5.7342 2.2399 39 1 2.8167 -3.4184 1.9615 40 1 3.9898 -3.6561 0.6256 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992520445.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:06 Heat of formation + Delta-G solvation = -33.224498 kcal Electronic energy + Delta-G solvation = -25532.639894 eV Core-core repulsion = 21774.545482 eV Total energy + Delta-G solvation = -3758.094412 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.105 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.20082 -41.66614 -39.84895 -38.31011 -36.00646 -34.84882 -33.39127 -31.74941 -30.34502 -28.42156 -27.62732 -25.89624 -25.69596 -23.36213 -22.07834 -21.47158 -20.81968 -20.21254 -19.84401 -18.85683 -17.96363 -17.37329 -17.10349 -16.95967 -16.84851 -16.22657 -15.74802 -15.65781 -15.52783 -15.09252 -14.89453 -14.52675 -14.23762 -13.86984 -13.62996 -13.45846 -13.20850 -13.14854 -12.92522 -12.81485 -12.59002 -12.30885 -12.10432 -12.02961 -11.89049 -11.72828 -11.66493 -11.50095 -11.24742 -11.03025 -10.65358 -10.13181 -9.84440 -9.78682 -8.82471 -7.84694 -5.19636 -0.78628 -0.11522 0.51111 1.14203 1.47941 1.49436 1.58515 1.99316 2.10501 2.51666 3.19280 3.33635 3.34773 3.63235 3.73980 3.93064 3.95300 4.14967 4.26304 4.36833 4.40734 4.46776 4.59940 4.63357 4.73229 4.80490 4.86768 4.90683 4.95551 5.10936 5.13262 5.16905 5.23951 5.33996 5.46700 5.54021 5.61370 5.66031 5.72331 6.21807 6.40904 7.06644 7.09888 7.79033 8.45743 9.27182 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.014688 B = 0.003860 C = 0.003368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.846292 B = 7251.534668 C = 8310.724859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.062 4.062 3 Si 0.972 3.028 4 H -0.288 1.288 5 H -0.299 1.299 6 H -0.267 1.267 7 C -0.231 4.231 8 H 0.084 0.916 9 N -0.609 5.609 10 C 0.187 3.813 11 C -0.131 4.131 12 C 0.169 3.831 13 N -0.700 5.700 14 C 0.592 3.408 15 O -0.550 6.550 16 C -0.280 4.280 17 C -0.029 4.029 18 C -0.174 4.174 19 C -0.031 4.031 20 F -0.102 7.102 21 S 0.244 5.756 22 C -0.103 4.103 23 C -0.110 4.110 24 C -0.124 4.124 25 C 0.152 3.848 26 H 0.053 0.947 27 H 0.246 0.754 28 H -0.006 1.006 29 H 0.029 0.971 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.402 0.598 33 H 0.174 0.826 34 H 0.185 0.815 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.054 0.946 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.172 -17.930 -5.300 18.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.255 4.255 3 Si 0.800 3.200 4 H -0.215 1.215 5 H -0.225 1.225 6 H -0.192 1.192 7 C -0.360 4.360 8 H 0.101 0.899 9 N -0.333 5.333 10 C 0.062 3.938 11 C -0.170 4.170 12 C 0.082 3.918 13 N -0.349 5.349 14 C 0.379 3.621 15 O -0.430 6.430 16 C -0.401 4.401 17 C -0.062 4.062 18 C -0.206 4.206 19 C -0.169 4.169 20 F -0.081 7.081 21 S 0.509 5.491 22 C -0.142 4.142 23 C -0.148 4.148 24 C -0.164 4.164 25 C 0.046 3.954 26 H 0.071 0.929 27 H 0.055 0.945 28 H 0.012 0.988 29 H 0.048 0.952 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.238 0.762 33 H 0.191 0.809 34 H 0.203 0.797 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.098 0.902 38 H 0.100 0.900 39 H 0.073 0.927 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.402 -16.987 -5.324 17.806 hybrid contribution -1.107 0.601 -0.207 1.277 sum -1.509 -16.386 -5.531 17.360 Atomic orbital electron populations 1.70164 1.06470 1.25279 1.57895 1.25596 0.96271 1.00957 1.02724 0.85170 0.77971 0.79630 0.77190 1.21498 1.22545 1.19180 1.19349 0.91656 0.83696 1.41343 0.89873 1.44683 1.10570 1.00575 1.77513 1.21068 0.85474 0.92659 0.94627 1.23166 0.99477 0.95860 0.98510 1.21617 0.91477 0.92969 0.85693 1.45771 1.35846 1.43323 1.09997 1.16994 0.79011 0.78526 0.87537 1.90813 1.66540 1.61081 1.24571 1.24468 1.08616 1.10659 0.96383 1.20692 0.92337 0.93501 0.99640 1.20501 1.05042 1.05159 0.89898 1.22133 1.05190 1.06865 0.82711 1.91537 1.91208 1.93805 1.31515 1.83587 1.30369 1.38609 0.96506 1.22257 0.95630 0.96849 0.99454 1.22308 0.94900 0.94712 1.02897 1.22799 0.98386 0.96270 0.98941 1.22038 0.92327 0.83962 0.97118 0.92917 0.94522 0.98792 0.95213 0.91728 0.90734 0.76236 0.80867 0.79746 0.91353 0.91254 0.90184 0.90021 0.92724 0.91527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.65 10.74 21.65 0.23 -56.42 16 2 C -0.06 -3.45 5.39 84.86 0.46 -3.00 16 3 Si 0.97 44.94 29.57 68.60 2.03 46.97 16 4 H -0.29 -13.13 7.11 99.48 0.71 -12.43 16 5 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 6 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 7 C -0.23 -12.39 9.96 84.03 0.84 -11.55 16 8 H 0.08 4.23 7.85 -2.91 -0.02 4.21 16 9 N -0.61 -29.74 3.03 -663.69 -2.01 -31.75 16 10 C 0.19 9.29 5.41 86.85 0.47 9.76 16 11 C -0.13 -5.24 5.75 31.89 0.18 -5.06 16 12 C 0.17 5.78 0.75 5.31 0.00 5.79 16 13 N -0.70 -21.70 5.25 -419.45 -2.20 -23.90 16 14 C 0.59 17.99 6.95 86.35 0.60 18.59 16 15 O -0.55 -19.31 14.71 -4.48 -0.07 -19.38 16 16 C -0.28 -6.79 6.44 24.03 0.15 -6.64 16 17 C -0.03 -0.57 10.00 21.71 0.22 -0.36 16 18 C -0.17 -2.90 10.16 21.14 0.21 -2.68 16 19 C -0.03 -0.59 8.10 66.90 0.54 -0.05 16 20 F -0.10 -2.02 17.32 44.97 0.78 -1.25 16 21 S 0.24 4.98 22.14 -56.49 -1.25 3.73 16 22 C -0.10 -2.99 5.25 31.32 0.16 -2.82 16 23 C -0.11 -2.79 6.83 31.61 0.22 -2.57 16 24 C -0.12 -4.07 6.21 31.80 0.20 -3.87 16 25 C 0.15 5.79 3.65 46.24 0.17 5.96 16 26 H 0.05 1.96 7.99 -2.38 -0.02 1.94 16 27 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 28 H -0.01 -0.33 8.06 -2.39 -0.02 -0.34 16 29 H 0.03 1.67 6.99 -2.39 -0.02 1.66 16 30 H 0.06 2.63 6.82 -2.39 -0.02 2.62 16 31 H 0.07 2.90 7.62 -2.39 -0.02 2.88 16 32 H 0.40 11.50 7.61 -92.71 -0.71 10.80 16 33 H 0.17 3.07 8.06 -2.91 -0.02 3.05 16 34 H 0.19 2.01 8.06 -2.91 -0.02 1.98 16 35 H 0.07 1.91 7.45 -2.39 -0.02 1.89 16 36 H 0.07 2.07 7.38 -2.38 -0.02 2.05 16 37 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.05 2.02 8.09 -2.39 -0.02 2.00 16 40 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -65.68 339.63 2.31 -63.37 By element: Atomic # 1 Polarization: 16.75 SS G_CDS: 0.37 Total: 17.12 kcal Atomic # 6 Polarization: -2.93 SS G_CDS: 4.43 Total: 1.50 kcal Atomic # 7 Polarization: -108.09 SS G_CDS: -3.98 Total: -112.06 kcal Atomic # 8 Polarization: -19.31 SS G_CDS: -0.07 Total: -19.38 kcal Atomic # 9 Polarization: -2.02 SS G_CDS: 0.78 Total: -1.25 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Atomic # 16 Polarization: 4.98 SS G_CDS: -1.25 Total: 3.73 kcal Total: -65.68 2.31 -63.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992520445.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.147 kcal (2) G-P(sol) polarization free energy of solvation -65.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds