Wall clock time and date at job start Tue Mar 31 2020 13:59:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.31927 * 119.02169 * 2 1 4 4 C 1.32133 * 121.05896 * 180.02562 * 3 2 1 5 5 C 1.38989 * 119.12763 * 0.02562 * 4 3 2 6 6 Cl 1.73593 * 120.88633 * 180.02562 * 5 4 3 7 7 C 1.39632 * 118.22366 * 359.97438 * 5 4 3 8 8 C 1.48371 * 120.56148 * 180.02562 * 7 5 4 9 9 O 1.21492 * 119.99921 * 39.80459 * 8 7 5 10 10 N 1.34772 * 119.99834 * 219.80709 * 8 7 5 11 11 C 1.46924 * 120.63118 * 356.08395 * 10 8 7 12 12 C 1.53193 * 108.77668 * 126.41305 * 11 10 8 13 13 C 1.53037 * 109.31068 * 54.63535 * 12 11 10 14 14 C 1.53035 * 109.53860 * 298.63372 * 13 12 11 15 15 H 1.09003 * 109.50142 * 301.38358 * 14 13 12 16 16 N 1.46507 * 109.49963 * 181.32004 * 14 13 12 17 17 C 1.36934 * 120.00168 * 155.00219 * 16 14 13 18 18 H 1.08004 * 120.00170 * 0.02562 * 17 16 14 19 19 C 1.38806 * 120.00194 * 180.02562 * 17 16 14 20 20 N 1.31622 * 120.00366 * 179.72725 * 19 17 16 21 21 Si 1.86803 * 120.00096 * 359.97438 * 19 17 16 22 22 H 1.48499 * 109.46986 * 90.00079 * 21 19 17 23 23 H 1.48496 * 109.47529 * 210.00418 * 21 19 17 24 24 H 1.48503 * 109.46716 * 330.00616 * 21 19 17 25 25 C 1.46930 * 120.62929 * 176.10543 * 10 8 7 26 26 N 1.31529 * 119.01958 * 180.30487 * 2 1 3 27 27 H 1.08994 * 109.47636 * 89.99720 * 1 2 3 28 28 H 1.09005 * 109.47258 * 209.99829 * 1 2 3 29 29 H 1.08998 * 109.47189 * 329.98935 * 1 2 3 30 30 H 1.08005 * 120.43481 * 180.02562 * 4 3 2 31 31 H 1.08997 * 109.58958 * 6.62671 * 11 10 8 32 32 H 1.09003 * 109.70497 * 246.26913 * 11 10 8 33 33 H 1.08997 * 109.49651 * 294.68416 * 12 11 10 34 34 H 1.09001 * 109.49749 * 174.58379 * 12 11 10 35 35 H 1.09004 * 109.45780 * 178.61319 * 13 12 11 36 36 H 1.08999 * 109.45519 * 58.65012 * 13 12 11 37 37 H 0.96999 * 120.00054 * 334.99766 * 16 14 13 38 38 H 0.96997 * 120.00052 * 180.02562 * 20 19 17 39 39 H 1.09001 * 109.58478 * 113.79852 * 25 10 8 40 40 H 1.08993 * 109.58411 * 353.37149 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1470 1.1536 0.0000 4 6 3.4675 1.2006 -0.0005 5 6 4.1868 0.0113 -0.0016 6 17 5.9227 0.0197 -0.0016 7 6 3.4757 -1.1904 -0.0015 8 6 4.1911 -2.4903 -0.0021 9 8 5.1924 -2.6329 0.6710 10 7 3.7302 -3.5128 -0.7494 11 6 2.4745 -3.3839 -1.5013 12 6 2.7393 -3.7392 -2.9677 13 6 3.3783 -5.1276 -3.0447 14 6 4.7159 -5.1173 -2.3012 15 1 5.3727 -4.3687 -2.7443 16 7 5.3417 -6.4381 -2.4022 17 6 6.7008 -6.5622 -2.2897 18 1 7.3113 -5.6865 -2.1260 19 6 7.2938 -7.8136 -2.3859 20 7 8.6006 -7.9323 -2.2831 21 14 6.2378 -9.3284 -2.6683 22 1 6.0874 -9.5620 -4.1271 23 1 6.8870 -10.5081 -2.0424 24 1 4.8993 -9.1191 -2.0600 25 6 4.4736 -4.7777 -0.8272 26 7 2.1450 -1.1501 -0.0061 27 1 -0.3634 0.0001 -1.0276 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3633 0.8899 0.5140 30 1 3.9811 2.1507 -0.0001 31 1 2.1116 -2.3584 -1.4335 32 1 1.7283 -4.0636 -1.0897 33 1 3.4145 -3.0032 -3.4042 34 1 1.7979 -3.7410 -3.5173 35 1 3.5452 -5.3931 -4.0887 36 1 2.7134 -5.8592 -2.5858 37 1 4.7934 -7.2247 -2.5488 38 1 9.0150 -8.8067 -2.3507 39 1 3.8923 -5.5726 -0.3598 40 1 5.4297 -4.6717 -0.3147 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000376258.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:05 Heat of formation + Delta-G solvation = 15.529725 kcal Electronic energy + Delta-G solvation = -25378.133569 eV Core-core repulsion = 21640.029554 eV Total energy + Delta-G solvation = -3738.104015 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.109 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.68492 -41.00135 -38.90933 -37.92354 -36.45791 -35.27571 -34.20189 -33.88390 -32.99288 -30.57618 -29.44715 -27.76830 -25.78479 -25.68945 -24.21138 -23.17991 -22.14497 -20.79090 -19.58615 -19.49407 -18.55037 -17.70388 -17.27808 -17.00102 -16.51976 -16.21626 -16.12302 -15.73084 -15.39976 -15.11701 -14.84975 -14.61879 -14.30021 -14.15562 -13.96636 -13.86135 -13.41765 -13.23589 -12.99159 -12.89979 -12.64841 -12.56889 -12.54784 -12.32318 -12.15074 -11.96759 -11.85205 -11.67037 -11.54240 -11.40346 -11.12455 -10.41571 -10.36212 -9.92830 -9.31027 -8.04820 -5.41510 -0.87779 -0.48350 0.72126 1.32512 1.37130 1.42493 1.49107 1.57753 2.25930 2.47086 2.61493 2.77639 3.02336 3.25695 3.30261 3.49268 3.70617 3.91883 3.99946 4.06906 4.21602 4.24899 4.31607 4.58584 4.64441 4.73784 4.76587 4.80085 4.81985 4.92300 4.98197 5.06882 5.26803 5.31021 5.35755 5.39837 5.41091 5.73203 6.16474 6.18934 6.60966 6.81275 7.03946 7.75843 7.98319 9.16833 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.018770 B = 0.003575 C = 0.003147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.422276 B = 7830.220183 C = 8893.879956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.314 3.686 3 N -0.495 5.495 4 C 0.188 3.812 5 C -0.128 4.128 6 Cl -0.022 7.022 7 C 0.146 3.854 8 C 0.554 3.446 9 O -0.549 6.549 10 N -0.581 5.581 11 C 0.095 3.905 12 C -0.123 4.123 13 C -0.121 4.121 14 C 0.170 3.830 15 H 0.032 0.968 16 N -0.742 5.742 17 C -0.239 4.239 18 H 0.046 0.954 19 C -0.063 4.063 20 N -0.985 5.985 21 Si 0.962 3.038 22 H -0.274 1.274 23 H -0.297 1.297 24 H -0.245 1.245 25 C 0.105 3.895 26 N -0.482 5.482 27 H 0.112 0.888 28 H 0.099 0.901 29 H 0.104 0.896 30 H 0.219 0.781 31 H 0.113 0.887 32 H 0.093 0.907 33 H 0.054 0.946 34 H 0.115 0.885 35 H 0.072 0.928 36 H 0.080 0.920 37 H 0.371 0.629 38 H 0.259 0.741 39 H 0.075 0.925 40 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.288 19.753 1.563 30.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.049 3.951 3 N -0.210 5.210 4 C 0.019 3.981 5 C -0.160 4.160 6 Cl 0.007 6.993 7 C -0.002 4.002 8 C 0.339 3.661 9 O -0.426 6.426 10 N -0.313 5.313 11 C -0.026 4.026 12 C -0.161 4.161 13 C -0.159 4.159 14 C 0.061 3.939 15 H 0.050 0.950 16 N -0.385 5.385 17 C -0.370 4.370 18 H 0.064 0.936 19 C -0.255 4.255 20 N -0.634 5.634 21 Si 0.788 3.212 22 H -0.200 1.200 23 H -0.224 1.224 24 H -0.170 1.170 25 C -0.020 4.020 26 N -0.200 5.200 27 H 0.130 0.870 28 H 0.117 0.883 29 H 0.122 0.878 30 H 0.236 0.764 31 H 0.130 0.870 32 H 0.111 0.889 33 H 0.073 0.927 34 H 0.133 0.867 35 H 0.091 0.909 36 H 0.098 0.902 37 H 0.206 0.794 38 H 0.068 0.932 39 H 0.093 0.907 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -23.382 19.665 1.919 30.612 hybrid contribution 1.885 -1.217 0.127 2.248 sum -21.496 18.448 2.046 28.401 Atomic orbital electron populations 1.20849 0.81519 1.05868 1.06010 1.24317 1.00326 0.82240 0.88244 1.68484 1.08782 1.30207 1.13478 1.23946 0.89058 0.97577 0.87559 1.23001 0.89103 0.96562 1.07367 1.98454 1.05885 1.98704 1.96302 1.21356 0.90707 0.93090 0.95052 1.18175 0.83732 0.83376 0.80814 1.90853 1.26340 1.82345 1.43046 1.48146 1.24622 1.12711 1.45778 1.22453 0.83818 1.05274 0.91010 1.21916 1.02535 0.95729 0.95964 1.21803 0.94609 0.98621 1.00871 1.20618 0.94351 0.86483 0.92441 0.94974 1.42633 1.03302 1.04706 1.87842 1.18956 0.83326 0.93681 1.40989 0.93614 1.25606 0.96817 1.00961 1.02075 1.69915 1.10688 1.24148 1.58680 0.85315 0.79082 0.78441 0.78333 1.19968 1.22423 1.16960 1.22374 0.95893 0.83727 1.00033 1.68545 1.05991 1.31362 1.14115 0.86951 0.88252 0.87758 0.76418 0.86978 0.88925 0.92672 0.86691 0.90921 0.90161 0.79442 0.93232 0.90664 0.92984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.61 10.31 71.23 0.73 0.13 16 2 C 0.31 5.03 7.64 138.79 1.06 6.09 16 3 N -0.50 -8.08 10.31 -187.76 -1.94 -10.02 16 4 C 0.19 3.06 11.14 84.83 0.94 4.00 16 5 C -0.13 -2.98 6.38 22.79 0.15 -2.84 16 6 Cl -0.02 -0.60 27.05 -2.72 -0.07 -0.67 16 7 C 0.15 3.86 6.04 41.98 0.25 4.11 16 8 C 0.55 18.84 7.21 86.94 0.63 19.46 16 9 O -0.55 -23.11 14.86 -3.69 -0.05 -23.16 16 10 N -0.58 -18.09 2.97 -821.72 -2.44 -20.54 16 11 C 0.10 2.05 6.05 86.36 0.52 2.57 16 12 C -0.12 -2.47 6.08 30.67 0.19 -2.28 16 13 C -0.12 -3.21 5.35 30.62 0.16 -3.04 16 14 C 0.17 6.51 2.92 45.07 0.13 6.65 16 15 H 0.03 1.40 8.08 -2.39 -0.02 1.38 16 16 N -0.74 -34.49 4.93 -322.57 -1.59 -36.08 16 17 C -0.24 -13.97 10.41 84.03 0.88 -13.10 16 18 H 0.05 3.03 8.06 -2.91 -0.02 3.01 16 19 C -0.06 -3.78 5.50 84.86 0.47 -3.31 16 20 N -0.98 -64.64 13.97 21.65 0.30 -64.34 16 21 Si 0.96 45.26 27.74 68.60 1.90 47.16 16 22 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 23 H -0.30 -14.28 7.11 99.48 0.71 -13.58 16 24 H -0.25 -10.16 6.52 99.48 0.65 -9.51 16 25 C 0.10 3.94 6.01 86.36 0.52 4.46 16 26 N -0.48 -10.09 7.31 -177.05 -1.29 -11.38 16 27 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 28 H 0.10 0.61 8.14 -2.38 -0.02 0.59 16 29 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.22 1.90 8.06 -2.91 -0.02 1.88 16 31 H 0.11 2.19 4.55 -2.39 -0.01 2.17 16 32 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.37 15.99 5.66 -92.71 -0.52 15.47 16 38 H 0.26 16.10 8.31 -92.71 -0.77 15.33 16 39 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 40 H 0.05 2.43 7.03 -2.39 -0.02 2.41 16 Total: -1.00 -78.93 343.94 1.94 -76.99 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: 0.50 Total: 19.13 kcal Atomic # 6 Polarization: 16.28 SS G_CDS: 6.63 Total: 22.91 kcal Atomic # 7 Polarization: -135.40 SS G_CDS: -6.96 Total: -142.35 kcal Atomic # 8 Polarization: -23.11 SS G_CDS: -0.05 Total: -23.16 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 1.90 Total: 47.16 kcal Atomic # 17 Polarization: -0.60 SS G_CDS: -0.07 Total: -0.67 kcal Total: -78.93 1.94 -76.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000376258.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.520 kcal (2) G-P(sol) polarization free energy of solvation -78.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds