Wall clock time and date at job start Tue Mar 31 2020 13:52:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.34226 * 126.28404 * 2 1 4 4 H 0.97003 * 125.73860 * 359.96094 * 3 2 1 5 5 N 1.39933 * 108.52607 * 179.97438 * 3 2 1 6 6 C 1.30532 * 108.89293 * 359.97438 * 5 3 2 7 7 Cl 1.73598 * 126.00398 * 180.02562 * 6 5 3 8 8 C 1.38066 * 126.27677 * 179.68323 * 2 1 3 9 9 C 1.47388 * 126.42803 * 0.03491 * 8 2 1 10 10 O 1.21610 * 119.99545 * 90.00061 * 9 8 2 11 11 N 1.34775 * 120.00044 * 270.00385 * 9 8 2 12 12 C 1.46505 * 119.99752 * 179.97438 * 11 9 8 13 13 C 1.50698 * 109.46968 * 179.97438 * 12 11 9 14 14 C 1.29458 * 117.68984 * 94.99643 * 13 12 11 15 15 C 1.50328 * 123.64464 * 180.85616 * 14 13 12 16 16 N 1.47005 * 109.16831 * 349.02688 * 15 14 13 17 17 C 1.36936 * 121.37275 * 222.96664 * 16 15 14 18 18 H 1.08001 * 120.00080 * 155.96404 * 17 16 15 19 19 C 1.38812 * 120.00268 * 335.96991 * 17 16 15 20 20 N 1.31617 * 120.00131 * 344.52458 * 19 17 16 21 21 Si 1.86802 * 120.00030 * 164.52296 * 19 17 16 22 22 H 1.48495 * 109.47245 * 59.99953 * 21 19 17 23 23 H 1.48500 * 109.46924 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.47215 * 299.99500 * 21 19 17 25 25 C 1.47334 * 117.24982 * 42.94527 * 16 15 14 26 26 C 1.49966 * 117.69487 * 274.73762 * 13 12 11 27 27 H 1.09003 * 109.47369 * 90.02598 * 1 2 3 28 28 H 1.08997 * 109.47440 * 330.03040 * 1 2 3 29 29 H 1.08996 * 109.47479 * 210.02566 * 1 2 3 30 30 H 0.96999 * 120.00235 * 359.97438 * 11 9 8 31 31 H 1.08997 * 109.46705 * 299.99627 * 12 11 9 32 32 H 1.09003 * 109.47334 * 59.99692 * 12 11 9 33 33 H 1.07995 * 118.17753 * 0.88607 * 14 13 12 34 34 H 1.09003 * 109.52038 * 108.93344 * 15 14 13 35 35 H 1.08998 * 109.52044 * 229.11712 * 15 14 13 36 36 H 0.96994 * 120.00605 * 180.02562 * 20 19 17 37 37 H 1.09001 * 109.77781 * 57.81113 * 25 16 15 38 38 H 1.09007 * 109.77728 * 178.61830 * 25 16 15 39 39 H 1.08999 * 109.31225 * 281.28875 * 26 13 12 40 40 H 1.08998 * 109.31257 * 40.71579 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3013 1.0820 0.0000 4 1 2.0019 2.0047 -0.0005 5 7 3.6340 0.6552 0.0006 6 6 3.6598 -0.6499 0.0015 7 17 5.0841 -1.6423 0.0031 8 6 2.3239 -1.1130 0.0062 9 6 1.8857 -2.5202 0.0132 10 8 1.7055 -3.1062 -1.0371 11 7 1.6847 -3.1576 1.1836 12 6 1.2486 -4.5562 1.1905 13 6 1.0992 -5.0287 2.6137 14 6 -0.0787 -4.9674 3.1474 15 6 -0.3754 -5.3849 4.5607 16 7 0.7896 -6.0941 5.1093 17 6 0.6448 -7.2368 5.8498 18 1 1.4581 -7.9443 5.9157 19 6 -0.5474 -7.4859 6.5159 20 7 -1.4167 -6.5141 6.6950 21 14 -0.9179 -9.2005 7.1579 22 1 0.1281 -9.6008 8.1330 23 1 -2.2445 -9.2032 7.8254 24 1 -0.9324 -10.1608 6.0254 25 6 2.1193 -5.5250 4.8289 26 6 2.3242 -5.5423 3.3099 27 1 -0.3634 -0.0005 -1.0277 28 1 -0.3634 0.8902 0.5133 29 1 -0.3634 -0.8897 0.5142 30 1 1.8288 -2.6903 2.0213 31 1 0.2910 -4.6407 0.6768 32 1 1.9903 -5.1706 0.6800 33 1 -0.8934 -4.5962 2.5436 34 1 -0.5823 -4.5019 5.1655 35 1 -1.2422 -6.0457 4.5709 36 1 -2.2495 -6.6880 7.1607 37 1 2.1680 -4.5012 5.1999 38 1 2.8882 -6.1295 5.3102 39 1 2.5249 -6.5619 2.9810 40 1 3.1750 -4.9103 3.0554 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000764414.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:08 Heat of formation + Delta-G solvation = 67.675545 kcal Electronic energy + Delta-G solvation = -24582.651630 eV Core-core repulsion = 20846.808827 eV Total energy + Delta-G solvation = -3735.842803 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.109 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.85856 -39.31285 -37.69876 -37.09489 -34.90096 -33.10773 -32.89688 -31.68135 -30.76223 -29.71851 -28.07464 -26.77409 -24.36238 -22.85130 -22.42534 -22.29315 -21.06199 -20.02169 -18.32950 -17.64759 -16.82496 -16.24184 -15.61593 -15.57078 -15.40911 -15.22479 -14.80678 -14.19035 -13.91774 -13.74924 -13.54133 -13.45940 -13.37550 -12.90144 -12.76410 -12.25727 -12.24558 -12.04924 -11.99818 -11.58103 -11.36771 -11.06853 -10.92077 -10.74293 -10.43079 -10.34926 -10.07828 -9.84348 -9.80511 -9.61292 -9.11069 -8.96582 -8.69574 -8.07604 -6.76588 -5.81822 -3.20457 1.15062 1.16020 1.84268 2.45596 2.53441 2.67977 3.38088 3.43599 3.45205 3.61369 4.12197 4.43470 4.48046 4.66503 4.89743 5.00178 5.14900 5.30284 5.34520 5.37094 5.39087 5.54690 5.60903 5.82758 5.94590 6.07172 6.16914 6.33256 6.44296 6.52387 6.57535 6.72633 6.86321 6.89733 7.14441 7.23820 7.30739 7.58275 7.70928 7.80357 8.23135 8.36160 9.17657 9.80344 10.38261 11.28659 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.021573 B = 0.002718 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.596239 B =10299.350818 C =10800.062681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.145 3.855 3 N -0.448 5.448 4 H 0.448 0.552 5 N -0.277 5.277 6 C 0.161 3.839 7 Cl 0.023 6.977 8 C -0.269 4.269 9 C 0.593 3.407 10 O -0.533 6.533 11 N -0.709 5.709 12 C 0.157 3.843 13 C -0.165 4.165 14 C -0.125 4.125 15 C 0.194 3.806 16 N -0.595 5.595 17 C -0.247 4.247 18 H 0.068 0.932 19 C -0.001 4.001 20 N -0.910 5.910 21 Si 0.905 3.095 22 H -0.283 1.283 23 H -0.290 1.290 24 H -0.284 1.284 25 C 0.144 3.856 26 C -0.091 4.091 27 H 0.093 0.907 28 H 0.083 0.917 29 H 0.095 0.905 30 H 0.403 0.597 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.094 0.906 34 H 0.041 0.959 35 H 0.093 0.907 36 H 0.254 0.746 37 H 0.023 0.977 38 H 0.057 0.943 39 H 0.065 0.935 40 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.014 15.836 -13.074 21.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.013 3.987 3 N -0.157 5.157 4 H 0.295 0.705 5 N -0.102 5.102 6 C -0.032 4.032 7 Cl 0.051 6.949 8 C -0.285 4.285 9 C 0.377 3.623 10 O -0.410 6.410 11 N -0.359 5.359 12 C 0.034 3.966 13 C -0.166 4.166 14 C -0.145 4.145 15 C 0.069 3.931 16 N -0.318 5.318 17 C -0.376 4.376 18 H 0.086 0.914 19 C -0.199 4.199 20 N -0.556 5.556 21 Si 0.735 3.265 22 H -0.209 1.209 23 H -0.216 1.216 24 H -0.210 1.210 25 C 0.017 3.983 26 C -0.130 4.130 27 H 0.112 0.888 28 H 0.102 0.898 29 H 0.113 0.887 30 H 0.237 0.763 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.112 0.888 34 H 0.058 0.942 35 H 0.111 0.889 36 H 0.064 0.936 37 H 0.041 0.959 38 H 0.075 0.925 39 H 0.083 0.917 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.572 16.291 -13.723 22.017 hybrid contribution -0.606 -0.863 0.682 1.256 sum 4.966 15.427 -13.042 20.803 Atomic orbital electron populations 1.20651 0.85524 1.05130 1.04666 1.21437 0.94904 0.85938 0.96417 1.45839 1.03023 1.08671 1.58176 0.70539 1.77161 0.96521 1.10727 1.25837 1.22572 0.88867 0.90489 1.01280 1.98432 1.35128 1.64681 1.96694 1.19833 0.91129 0.94649 1.22877 1.17122 0.76990 0.84218 0.83985 1.90794 1.51096 1.67386 1.31709 1.46195 1.67983 1.13598 1.08128 1.20509 0.99926 0.80484 0.95654 1.20497 0.96602 1.05159 0.94301 1.23277 0.95720 0.95943 0.99597 1.19754 0.91713 0.96123 0.85482 1.44119 0.99794 1.28108 1.59820 1.19147 1.00286 0.95523 1.22634 0.91399 1.24978 0.98783 0.97685 0.98408 1.69990 1.10580 1.29983 1.45002 0.86322 0.77281 0.84318 0.78586 1.20933 1.21637 1.21050 1.20992 0.89065 0.96481 0.91725 1.20792 0.94095 0.99911 0.98189 0.88839 0.89808 0.88658 0.76264 0.91469 0.91374 0.88777 0.94169 0.88913 0.93564 0.95874 0.92479 0.91674 0.92783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.57 10.25 36.00 0.37 -0.20 16 2 C 0.15 1.27 7.29 -81.61 -0.60 0.68 16 3 N -0.45 -3.50 7.28 33.86 0.25 -3.25 16 4 H 0.45 1.73 8.96 -182.72 -1.64 0.09 16 5 N -0.28 -3.12 12.64 33.18 0.42 -2.70 16 6 C 0.16 1.97 7.89 -16.90 -0.13 1.84 16 7 Cl 0.02 0.27 29.19 -51.86 -1.51 -1.24 16 8 C -0.27 -3.22 5.88 -105.04 -0.62 -3.84 16 9 C 0.59 8.22 7.16 -12.54 -0.09 8.13 16 10 O -0.53 -9.24 17.11 5.27 0.09 -9.15 16 11 N -0.71 -9.12 5.55 -62.57 -0.35 -9.46 16 12 C 0.16 2.25 5.66 -5.19 -0.03 2.22 16 13 C -0.16 -2.71 5.22 -100.99 -0.53 -3.24 16 14 C -0.12 -2.25 9.47 -35.78 -0.34 -2.59 16 15 C 0.19 4.43 5.23 -5.10 -0.03 4.41 16 16 N -0.60 -14.51 3.01 -173.56 -0.52 -15.03 16 17 C -0.25 -6.64 9.71 -15.06 -0.15 -6.79 16 18 H 0.07 1.79 7.88 -52.49 -0.41 1.38 16 19 C 0.00 -0.02 5.01 -17.43 -0.09 -0.11 16 20 N -0.91 -25.68 11.08 55.49 0.61 -25.07 16 21 Si 0.90 21.43 29.58 -169.99 -5.03 16.40 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 24 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 25 C 0.14 2.90 6.59 -3.44 -0.02 2.87 16 26 C -0.09 -1.54 5.95 -28.09 -0.17 -1.71 16 27 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.09 0.63 7.95 -51.93 -0.41 0.22 16 30 H 0.40 4.73 8.45 -40.82 -0.34 4.39 16 31 H 0.07 0.97 7.78 -51.93 -0.40 0.57 16 32 H 0.07 1.02 8.11 -51.93 -0.42 0.60 16 33 H 0.09 1.49 7.73 -52.49 -0.41 1.09 16 34 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.09 2.38 6.41 -51.93 -0.33 2.04 16 36 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 37 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.06 1.13 7.96 -51.93 -0.41 0.71 16 39 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 LS Contribution 356.46 15.07 5.37 5.37 Total: -1.00 -32.68 356.46 -9.54 -42.21 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -6.46 Total: 0.24 kcal Atomic # 6 Polarization: 4.09 SS G_CDS: -2.41 Total: 1.68 kcal Atomic # 7 Polarization: -55.93 SS G_CDS: 0.41 Total: -55.52 kcal Atomic # 8 Polarization: -9.24 SS G_CDS: 0.09 Total: -9.15 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.03 Total: 16.40 kcal Atomic # 17 Polarization: 0.27 SS G_CDS: -1.51 Total: -1.24 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.68 -9.54 -42.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000764414.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.889 kcal (2) G-P(sol) polarization free energy of solvation -32.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.214 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds