Wall clock time and date at job start Tue Mar 31 2020 13:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.34226 * 126.28404 * 2 1 4 4 H 0.97003 * 125.73860 * 359.96094 * 3 2 1 5 5 N 1.39933 * 108.52607 * 179.97438 * 3 2 1 6 6 C 1.30532 * 108.89293 * 359.97438 * 5 3 2 7 7 Cl 1.73598 * 126.00398 * 180.02562 * 6 5 3 8 8 C 1.38066 * 126.27677 * 179.68323 * 2 1 3 9 9 C 1.47388 * 126.42803 * 0.03491 * 8 2 1 10 10 O 1.21610 * 119.99545 * 90.00061 * 9 8 2 11 11 N 1.34775 * 120.00044 * 270.00385 * 9 8 2 12 12 C 1.46505 * 119.99752 * 179.97438 * 11 9 8 13 13 C 1.50698 * 109.46968 * 179.97438 * 12 11 9 14 14 C 1.29458 * 117.68984 * 94.99643 * 13 12 11 15 15 C 1.50328 * 123.64464 * 180.85616 * 14 13 12 16 16 N 1.47005 * 109.16831 * 349.02688 * 15 14 13 17 17 C 1.36936 * 121.37275 * 222.96664 * 16 15 14 18 18 H 1.08001 * 120.00080 * 155.96404 * 17 16 15 19 19 C 1.38812 * 120.00268 * 335.96991 * 17 16 15 20 20 N 1.31617 * 120.00131 * 344.52458 * 19 17 16 21 21 Si 1.86802 * 120.00030 * 164.52296 * 19 17 16 22 22 H 1.48495 * 109.47245 * 59.99953 * 21 19 17 23 23 H 1.48500 * 109.46924 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.47215 * 299.99500 * 21 19 17 25 25 C 1.47334 * 117.24982 * 42.94527 * 16 15 14 26 26 C 1.49966 * 117.69487 * 274.73762 * 13 12 11 27 27 H 1.09003 * 109.47369 * 90.02598 * 1 2 3 28 28 H 1.08997 * 109.47440 * 330.03040 * 1 2 3 29 29 H 1.08996 * 109.47479 * 210.02566 * 1 2 3 30 30 H 0.96999 * 120.00235 * 359.97438 * 11 9 8 31 31 H 1.08997 * 109.46705 * 299.99627 * 12 11 9 32 32 H 1.09003 * 109.47334 * 59.99692 * 12 11 9 33 33 H 1.07995 * 118.17753 * 0.88607 * 14 13 12 34 34 H 1.09003 * 109.52038 * 108.93344 * 15 14 13 35 35 H 1.08998 * 109.52044 * 229.11712 * 15 14 13 36 36 H 0.96994 * 120.00605 * 180.02562 * 20 19 17 37 37 H 1.09001 * 109.77781 * 57.81113 * 25 16 15 38 38 H 1.09007 * 109.77728 * 178.61830 * 25 16 15 39 39 H 1.08999 * 109.31225 * 281.28875 * 26 13 12 40 40 H 1.08998 * 109.31257 * 40.71579 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3013 1.0820 0.0000 4 1 2.0019 2.0047 -0.0005 5 7 3.6340 0.6552 0.0006 6 6 3.6598 -0.6499 0.0015 7 17 5.0841 -1.6423 0.0031 8 6 2.3239 -1.1130 0.0062 9 6 1.8857 -2.5202 0.0132 10 8 1.7055 -3.1062 -1.0371 11 7 1.6847 -3.1576 1.1836 12 6 1.2486 -4.5562 1.1905 13 6 1.0992 -5.0287 2.6137 14 6 -0.0787 -4.9674 3.1474 15 6 -0.3754 -5.3849 4.5607 16 7 0.7896 -6.0941 5.1093 17 6 0.6448 -7.2368 5.8498 18 1 1.4581 -7.9443 5.9157 19 6 -0.5474 -7.4859 6.5159 20 7 -1.4167 -6.5141 6.6950 21 14 -0.9179 -9.2005 7.1579 22 1 0.1281 -9.6008 8.1330 23 1 -2.2445 -9.2032 7.8254 24 1 -0.9324 -10.1608 6.0254 25 6 2.1193 -5.5250 4.8289 26 6 2.3242 -5.5423 3.3099 27 1 -0.3634 -0.0005 -1.0277 28 1 -0.3634 0.8902 0.5133 29 1 -0.3634 -0.8897 0.5142 30 1 1.8288 -2.6903 2.0213 31 1 0.2910 -4.6407 0.6768 32 1 1.9903 -5.1706 0.6800 33 1 -0.8934 -4.5962 2.5436 34 1 -0.5823 -4.5019 5.1655 35 1 -1.2422 -6.0457 4.5709 36 1 -2.2495 -6.6880 7.1607 37 1 2.1680 -4.5012 5.1999 38 1 2.8882 -6.1295 5.3102 39 1 2.5249 -6.5619 2.9810 40 1 3.1750 -4.9103 3.0554 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000764414.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:07 Heat of formation + Delta-G solvation = 45.359660 kcal Electronic energy + Delta-G solvation = -24583.619319 eV Core-core repulsion = 20846.808827 eV Total energy + Delta-G solvation = -3736.810492 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.109 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.64131 -40.46056 -39.22089 -37.96005 -36.35859 -34.51447 -33.75321 -32.85741 -32.12244 -31.36693 -28.97522 -28.11684 -25.95469 -24.40809 -23.57233 -23.08740 -22.63300 -20.99869 -19.49499 -19.10950 -17.86449 -17.35821 -17.13597 -16.89417 -16.38021 -16.24031 -16.05462 -15.69931 -15.39038 -15.18006 -14.78671 -14.62813 -14.16493 -14.07410 -13.89329 -13.54246 -13.32598 -13.25006 -13.01205 -12.88578 -12.82059 -12.75832 -12.56517 -12.24312 -12.09318 -11.91910 -11.68425 -11.30675 -11.13830 -10.65976 -10.57692 -10.09619 -9.92425 -9.61233 -8.72508 -7.86589 -5.27431 0.34406 0.43788 0.95298 1.26298 1.47010 1.48716 1.51165 1.57405 1.87291 2.52812 2.53506 3.30453 3.47884 3.65430 3.74011 3.86900 3.97490 4.00409 4.09145 4.48615 4.56464 4.62282 4.63106 4.71334 4.75459 4.81491 4.87679 4.95174 5.06740 5.13252 5.24654 5.36715 5.44096 5.51774 5.63372 5.80163 5.96191 6.21011 6.22308 6.36036 6.52922 7.15998 7.17950 7.85934 8.39395 9.21668 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.021573 B = 0.002718 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.596239 B =10299.350818 C =10800.062681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.168 3.832 3 N -0.427 5.427 4 H 0.466 0.534 5 N -0.296 5.296 6 C 0.148 3.852 7 Cl 0.016 6.984 8 C -0.302 4.302 9 C 0.603 3.397 10 O -0.571 6.571 11 N -0.699 5.699 12 C 0.167 3.833 13 C -0.140 4.140 14 C -0.138 4.138 15 C 0.204 3.796 16 N -0.615 5.615 17 C -0.259 4.259 18 H 0.068 0.932 19 C -0.052 4.052 20 N -0.937 5.937 21 Si 0.966 3.034 22 H -0.277 1.277 23 H -0.294 1.294 24 H -0.281 1.281 25 C 0.139 3.861 26 C -0.085 4.085 27 H 0.105 0.895 28 H 0.116 0.884 29 H 0.087 0.913 30 H 0.411 0.589 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.118 0.882 34 H 0.015 0.985 35 H 0.057 0.943 36 H 0.250 0.750 37 H 0.027 0.973 38 H 0.056 0.944 39 H 0.063 0.937 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.217 16.952 -14.106 22.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.033 3.967 3 N -0.139 5.139 4 H 0.317 0.683 5 N -0.122 5.122 6 C -0.044 4.044 7 Cl 0.044 6.956 8 C -0.318 4.318 9 C 0.388 3.612 10 O -0.450 6.450 11 N -0.350 5.350 12 C 0.044 3.956 13 C -0.141 4.141 14 C -0.158 4.158 15 C 0.079 3.921 16 N -0.339 5.339 17 C -0.389 4.389 18 H 0.086 0.914 19 C -0.247 4.247 20 N -0.584 5.584 21 Si 0.795 3.205 22 H -0.202 1.202 23 H -0.220 1.220 24 H -0.207 1.207 25 C 0.014 3.986 26 C -0.124 4.124 27 H 0.123 0.877 28 H 0.135 0.865 29 H 0.106 0.894 30 H 0.247 0.753 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.136 0.864 34 H 0.033 0.967 35 H 0.076 0.924 36 H 0.059 0.941 37 H 0.045 0.955 38 H 0.075 0.925 39 H 0.081 0.919 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 5.810 17.453 -14.750 23.578 hybrid contribution -0.620 -1.122 1.002 1.627 sum 5.190 16.331 -13.748 21.969 Atomic orbital electron populations 1.20833 0.83041 1.06406 1.05746 1.21825 0.96081 0.85066 0.93691 1.45857 1.01864 1.09577 1.56620 0.68307 1.77097 0.98359 1.10319 1.26376 1.22651 0.88849 0.90861 1.02026 1.98420 1.35516 1.64933 1.96758 1.19760 0.91639 0.94352 1.26010 1.17269 0.75906 0.84765 0.83287 1.90774 1.52848 1.68440 1.32962 1.46041 1.67521 1.12912 1.08477 1.20306 1.00304 0.81275 0.93705 1.20574 0.95664 1.02861 0.94999 1.22963 0.97343 0.98062 0.97474 1.19424 0.90376 0.94217 0.88034 1.44404 1.01661 1.27986 1.59899 1.19471 1.00368 0.96565 1.22497 0.91395 1.25700 0.98850 1.00876 0.99254 1.70145 1.10719 1.31563 1.45989 0.85352 0.76800 0.80352 0.78011 1.20245 1.21976 1.20674 1.21162 0.87126 0.96324 0.94005 1.20719 0.95431 1.00591 0.95640 0.87687 0.86516 0.89408 0.75349 0.91065 0.91354 0.86377 0.96743 0.92445 0.94100 0.95451 0.92512 0.91866 0.89750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.81 10.25 71.23 0.73 -0.08 16 2 C 0.17 2.48 7.29 42.15 0.31 2.79 16 3 N -0.43 -5.52 7.28 -46.80 -0.34 -5.86 16 4 H 0.47 2.07 8.96 -213.42 -1.91 0.16 16 5 N -0.30 -6.16 12.64 -48.95 -0.62 -6.78 16 6 C 0.15 3.45 7.89 85.66 0.68 4.13 16 7 Cl 0.02 0.37 29.19 -2.72 -0.08 0.29 16 8 C -0.30 -6.70 5.88 -20.13 -0.12 -6.81 16 9 C 0.60 15.74 7.16 86.65 0.62 16.36 16 10 O -0.57 -19.14 17.11 -4.06 -0.07 -19.21 16 11 N -0.70 -16.54 5.55 -470.14 -2.61 -19.15 16 12 C 0.17 4.43 5.66 85.63 0.48 4.91 16 13 C -0.14 -4.35 5.22 -15.14 -0.08 -4.43 16 14 C -0.14 -4.87 9.47 27.10 0.26 -4.61 16 15 C 0.20 9.54 5.23 85.42 0.45 9.99 16 16 N -0.62 -30.30 3.01 -703.02 -2.11 -32.41 16 17 C -0.26 -14.11 9.71 84.03 0.82 -13.29 16 18 H 0.07 3.61 7.88 -2.91 -0.02 3.58 16 19 C -0.05 -2.86 5.01 84.86 0.43 -2.43 16 20 N -0.94 -54.33 11.08 21.65 0.24 -54.09 16 21 Si 0.97 44.55 29.58 68.60 2.03 46.58 16 22 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 23 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 24 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 25 C 0.14 5.50 6.59 86.32 0.57 6.06 16 26 C -0.09 -2.72 5.95 29.71 0.18 -2.54 16 27 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.12 0.19 8.14 -2.39 -0.02 0.17 16 29 H 0.09 0.91 7.95 -2.39 -0.02 0.90 16 30 H 0.41 8.68 8.45 -92.71 -0.78 7.90 16 31 H 0.07 1.90 7.78 -2.39 -0.02 1.88 16 32 H 0.07 1.88 8.11 -2.39 -0.02 1.86 16 33 H 0.12 3.58 7.73 -2.91 -0.02 3.56 16 34 H 0.01 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.06 3.06 6.41 -2.39 -0.02 3.04 16 36 H 0.25 14.09 8.31 -92.71 -0.77 13.32 16 37 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.06 2.21 7.96 -2.38 -0.02 2.19 16 39 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 40 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 Total: -1.00 -71.93 356.46 0.15 -71.77 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -1.60 Total: 8.81 kcal Atomic # 6 Polarization: 4.73 SS G_CDS: 5.31 Total: 10.04 kcal Atomic # 7 Polarization: -112.84 SS G_CDS: -5.44 Total: -118.28 kcal Atomic # 8 Polarization: -19.14 SS G_CDS: -0.07 Total: -19.21 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Atomic # 17 Polarization: 0.37 SS G_CDS: -0.08 Total: 0.29 kcal Total: -71.93 0.15 -71.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000764414.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.134 kcal (2) G-P(sol) polarization free energy of solvation -71.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.774 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds