Wall clock time and date at job start Tue Mar 31 2020 14:00:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31923 * 119.01776 * 2 1 4 4 C 1.32133 * 121.05657 * 180.02562 * 3 2 1 5 5 C 1.38991 * 119.12795 * 0.02562 * 4 3 2 6 6 Cl 1.73592 * 120.88748 * 180.02562 * 5 4 3 7 7 C 1.39631 * 118.22130 * 359.97438 * 5 4 3 8 8 C 1.48371 * 120.55978 * 180.27072 * 7 5 4 9 9 O 1.21485 * 120.00214 * 359.72701 * 8 7 5 10 10 N 1.34784 * 120.00010 * 179.72026 * 8 7 5 11 11 C 1.46500 * 119.99831 * 180.02562 * 10 8 7 12 12 H 1.08998 * 109.49775 * 35.00601 * 11 10 8 13 13 C 1.53040 * 109.49374 * 155.06541 * 11 10 8 14 14 C 1.53046 * 109.53843 * 181.31724 * 13 11 10 15 15 C 1.53198 * 109.30943 * 298.63765 * 14 13 11 16 16 N 1.46924 * 108.77682 * 54.63553 * 15 14 13 17 17 C 1.36939 * 120.63226 * 126.38640 * 16 15 14 18 18 H 1.07993 * 120.00009 * 332.60550 * 17 16 15 19 19 C 1.38813 * 119.99914 * 152.60178 * 17 16 15 20 20 N 1.31614 * 120.00120 * 159.36994 * 19 17 16 21 21 Si 1.86806 * 119.99846 * 339.37152 * 19 17 16 22 22 H 1.48496 * 109.47176 * 92.92317 * 21 19 17 23 23 H 1.48500 * 109.46773 * 212.91819 * 21 19 17 24 24 H 1.48493 * 109.47141 * 332.91494 * 21 19 17 25 25 C 1.46932 * 118.76469 * 306.41141 * 16 15 14 26 26 N 1.31525 * 119.01844 * 180.02562 * 2 1 3 27 27 H 1.08994 * 109.47164 * 269.97487 * 1 2 3 28 28 H 1.08994 * 109.47148 * 29.97989 * 1 2 3 29 29 H 1.09004 * 109.47281 * 149.97600 * 1 2 3 30 30 H 1.08004 * 120.43736 * 179.97438 * 4 3 2 31 31 H 0.96996 * 119.99700 * 0.02562 * 10 8 7 32 32 H 1.08998 * 109.46158 * 301.33665 * 13 11 10 33 33 H 1.08997 * 109.45918 * 61.29665 * 13 11 10 34 34 H 1.09004 * 109.49481 * 58.58479 * 14 13 11 35 35 H 1.08992 * 109.50174 * 178.65333 * 14 13 11 36 36 H 1.09004 * 109.58136 * 174.41869 * 15 14 13 37 37 H 1.08994 * 109.58635 * 294.70112 * 15 14 13 38 38 H 0.97003 * 120.00370 * 179.97438 * 20 19 17 39 39 H 1.09005 * 109.56145 * 293.78745 * 25 16 15 40 40 H 1.08998 * 109.61747 * 173.35867 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1469 1.1536 0.0000 4 6 3.4674 1.2006 -0.0005 5 6 4.1868 0.0113 -0.0016 6 17 5.9227 0.0198 -0.0016 7 6 3.4757 -1.1904 -0.0015 8 6 4.1911 -2.4902 0.0034 9 8 5.4057 -2.5151 0.0024 10 7 3.4935 -3.6434 0.0091 11 6 4.1999 -4.9268 0.0145 12 1 5.1130 -4.8370 0.6029 13 6 3.3005 -6.0023 0.6281 14 6 4.0496 -7.3364 0.6644 15 6 4.4017 -7.7587 -0.7655 16 7 5.1436 -6.6675 -1.4117 17 6 6.3616 -6.9002 -1.9927 18 1 6.9869 -7.7037 -1.6327 19 6 6.7924 -6.1032 -3.0445 20 7 8.0738 -6.0368 -3.3378 21 14 5.5536 -5.1250 -4.0435 22 1 5.4232 -3.7608 -3.4715 23 1 6.0178 -5.0293 -5.4508 24 1 4.2353 -5.8073 -4.0024 25 6 4.5545 -5.3214 -1.4226 26 7 2.1450 -1.1501 -0.0005 27 1 -0.3633 -0.0005 1.0276 28 1 -0.3633 0.8901 -0.5135 29 1 -0.3634 -0.8898 -0.5142 30 1 3.9811 2.1507 -0.0009 31 1 2.5237 -3.6235 0.0096 32 1 3.0272 -5.7117 1.6425 33 1 2.3985 -6.1085 0.0255 34 1 4.9644 -7.2243 1.2463 35 1 3.4173 -8.0964 1.1233 36 1 5.0202 -8.6559 -0.7397 37 1 3.4870 -7.9614 -1.3224 38 1 8.3749 -5.4802 -4.0730 39 1 3.6523 -5.3228 -2.0343 40 1 5.2735 -4.6106 -1.8299 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001008757607.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:00:24 Heat of formation + Delta-G solvation = 16.301370 kcal Electronic energy + Delta-G solvation = -25526.477620 eV Core-core repulsion = 21788.407066 eV Total energy + Delta-G solvation = -3738.070554 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.109 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.58725 -40.94214 -39.20405 -37.89540 -36.05973 -35.28993 -34.44059 -34.17166 -32.60687 -30.85656 -29.45060 -27.24575 -27.07748 -24.77934 -24.20104 -23.32381 -21.96512 -21.18269 -19.65905 -18.97554 -18.84950 -17.61141 -17.32457 -17.05491 -16.86940 -16.30964 -16.09552 -15.72726 -15.46927 -15.19332 -14.91893 -14.63409 -14.50508 -14.14026 -13.97426 -13.87573 -13.45462 -13.30028 -12.92234 -12.76494 -12.68906 -12.63041 -12.51033 -12.47206 -12.19406 -11.82702 -11.74039 -11.68699 -11.44676 -11.38206 -10.84288 -10.47996 -10.44119 -10.22737 -8.96208 -8.23202 -5.53460 -0.97887 -0.50560 0.75019 1.22367 1.27214 1.36962 1.45959 1.66685 2.34843 2.39128 2.49986 2.74833 2.97304 3.14297 3.30329 3.39693 3.72946 3.81009 3.99879 4.12713 4.21859 4.31605 4.37765 4.64230 4.70131 4.71970 4.76742 4.78331 4.85234 4.97691 5.05739 5.14441 5.20295 5.22239 5.27701 5.35583 5.53513 5.82636 6.07946 6.28096 6.61139 6.86024 6.96479 7.57569 7.97085 8.96657 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.013481 B = 0.004494 C = 0.003929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2076.484884 B = 6229.518587 C = 7125.065676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.313 3.687 3 N -0.494 5.494 4 C 0.184 3.816 5 C -0.124 4.124 6 Cl -0.013 7.013 7 C 0.135 3.865 8 C 0.549 3.451 9 O -0.533 6.533 10 N -0.687 5.687 11 C 0.135 3.865 12 H 0.064 0.936 13 C -0.107 4.107 14 C -0.123 4.123 15 C 0.136 3.864 16 N -0.616 5.616 17 C -0.247 4.247 18 H 0.059 0.941 19 C -0.030 4.030 20 N -0.953 5.953 21 Si 0.939 3.061 22 H -0.297 1.297 23 H -0.307 1.307 24 H -0.252 1.252 25 C 0.120 3.880 26 N -0.486 5.486 27 H 0.110 0.890 28 H 0.104 0.896 29 H 0.100 0.900 30 H 0.220 0.780 31 H 0.421 0.579 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.049 0.951 35 H 0.105 0.895 36 H 0.059 0.941 37 H 0.044 0.956 38 H 0.260 0.740 39 H 0.035 0.965 40 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.228 13.458 10.909 26.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.047 3.953 3 N -0.208 5.208 4 C 0.015 3.985 5 C -0.157 4.157 6 Cl 0.016 6.984 7 C -0.013 4.013 8 C 0.332 3.668 9 O -0.408 6.408 10 N -0.339 5.339 11 C 0.029 3.971 12 H 0.082 0.918 13 C -0.144 4.144 14 C -0.163 4.163 15 C 0.012 3.988 16 N -0.341 5.341 17 C -0.377 4.377 18 H 0.077 0.923 19 C -0.225 4.225 20 N -0.599 5.599 21 Si 0.770 3.230 22 H -0.226 1.226 23 H -0.235 1.235 24 H -0.176 1.176 25 C -0.007 4.007 26 N -0.204 5.204 27 H 0.128 0.872 28 H 0.123 0.877 29 H 0.119 0.881 30 H 0.237 0.763 31 H 0.259 0.741 32 H 0.108 0.892 33 H 0.104 0.896 34 H 0.068 0.932 35 H 0.123 0.877 36 H 0.077 0.923 37 H 0.062 0.938 38 H 0.069 0.931 39 H 0.053 0.947 40 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -20.096 13.367 10.813 26.447 hybrid contribution 1.289 0.545 -0.978 1.708 sum -18.807 13.912 9.835 25.377 Atomic orbital electron populations 1.20838 0.81500 1.05942 1.05871 1.24259 1.00336 0.82204 0.88487 1.68474 1.08867 1.30231 1.13267 1.23979 0.89062 0.97673 0.87831 1.23100 0.89606 0.96649 1.06393 1.98460 1.05276 1.98626 1.95998 1.21453 0.90576 0.93463 0.95849 1.18147 0.86685 0.83988 0.77959 1.90942 1.13867 1.86946 1.49064 1.45792 1.11345 1.04379 1.72424 1.21539 0.96249 0.82231 0.97049 0.91807 1.21677 0.97825 0.93132 1.01806 1.21921 1.00328 0.97054 0.96948 1.21276 0.95037 0.89898 0.92583 1.44435 1.20002 1.03766 1.65919 1.18907 0.92837 1.15820 1.10151 0.92323 1.25833 0.96947 1.00470 0.99226 1.69952 1.14762 1.43179 1.31975 0.86011 0.81257 0.78265 0.77515 1.22560 1.23530 1.17636 1.21628 0.96209 0.86950 0.95874 1.68346 1.06254 1.31999 1.13796 0.87172 0.87726 0.88136 0.76342 0.74080 0.89154 0.89584 0.93192 0.87667 0.92292 0.93763 0.93101 0.94703 0.94592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.79 10.31 71.24 0.73 -0.06 16 2 C 0.31 5.83 7.64 138.79 1.06 6.89 16 3 N -0.49 -9.28 10.31 -187.76 -1.94 -11.22 16 4 C 0.18 3.45 11.14 84.83 0.94 4.39 16 5 C -0.12 -3.24 6.40 22.79 0.15 -3.09 16 6 Cl -0.01 -0.37 26.25 -2.72 -0.07 -0.45 16 7 C 0.13 3.87 6.79 41.98 0.29 4.16 16 8 C 0.55 19.41 7.79 86.94 0.68 20.09 16 9 O -0.53 -23.38 13.81 -3.67 -0.05 -23.43 16 10 N -0.69 -21.26 5.07 -444.54 -2.26 -23.52 16 11 C 0.14 4.81 2.60 45.07 0.12 4.93 16 12 H 0.06 2.69 7.58 -2.39 -0.02 2.68 16 13 C -0.11 -2.71 5.35 30.62 0.16 -2.55 16 14 C -0.12 -3.41 6.08 30.68 0.19 -3.22 16 15 C 0.14 4.95 6.52 86.36 0.56 5.52 16 16 N -0.62 -29.68 2.77 -699.08 -1.94 -31.62 16 17 C -0.25 -14.62 10.03 84.03 0.84 -13.77 16 18 H 0.06 3.72 8.05 -2.91 -0.02 3.69 16 19 C -0.03 -1.84 5.23 84.86 0.44 -1.39 16 20 N -0.95 -63.20 13.97 21.65 0.30 -62.90 16 21 Si 0.94 50.33 24.34 68.60 1.67 52.00 16 22 H -0.30 -16.24 6.62 99.48 0.66 -15.58 16 23 H -0.31 -16.41 7.11 99.48 0.71 -15.70 16 24 H -0.25 -12.51 6.64 99.48 0.66 -11.85 16 25 C 0.12 5.39 3.78 86.36 0.33 5.72 16 26 N -0.49 -11.31 9.59 -177.05 -1.70 -13.01 16 27 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.10 0.81 8.14 -2.38 -0.02 0.79 16 30 H 0.22 2.39 8.06 -2.91 -0.02 2.37 16 31 H 0.42 10.13 7.99 -92.71 -0.74 9.39 16 32 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.06 2.19 7.93 -2.38 -0.02 2.18 16 37 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.26 16.50 8.31 -92.71 -0.77 15.73 16 39 H 0.04 1.50 7.07 -2.38 -0.02 1.48 16 40 H 0.04 1.94 4.50 -2.39 -0.01 1.93 16 Total: -1.00 -80.11 340.78 0.76 -79.35 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: 0.25 Total: 7.18 kcal Atomic # 6 Polarization: 21.12 SS G_CDS: 6.49 Total: 27.61 kcal Atomic # 7 Polarization: -134.73 SS G_CDS: -7.52 Total: -142.26 kcal Atomic # 8 Polarization: -23.38 SS G_CDS: -0.05 Total: -23.43 kcal Atomic # 14 Polarization: 50.33 SS G_CDS: 1.67 Total: 52.00 kcal Atomic # 17 Polarization: -0.37 SS G_CDS: -0.07 Total: -0.45 kcal Total: -80.11 0.76 -79.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008757607.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.648 kcal (2) G-P(sol) polarization free energy of solvation -80.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds