Wall clock time and date at job start Tue Mar 31 2020 14:00:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31920 * 119.01865 * 2 1 4 4 C 1.32137 * 121.05670 * 179.97438 * 3 2 1 5 5 C 1.38986 * 119.12472 * 359.72583 * 4 3 2 6 6 Cl 1.73600 * 120.88929 * 180.29264 * 5 4 3 7 7 C 1.39635 * 118.22714 * 0.53940 * 5 4 3 8 8 C 1.48371 * 120.56560 * 179.73644 * 7 5 4 9 9 O 1.21484 * 119.99660 * 359.72171 * 8 7 5 10 10 N 1.34777 * 119.99912 * 179.71783 * 8 7 5 11 11 C 1.46498 * 119.99637 * 180.02562 * 10 8 7 12 12 H 1.08992 * 109.52612 * 325.08225 * 11 10 8 13 13 C 1.53039 * 109.49666 * 204.99948 * 11 10 8 14 14 C 1.53040 * 109.54124 * 178.68363 * 13 11 10 15 15 C 1.53198 * 109.31222 * 61.36517 * 14 13 11 16 16 N 1.46930 * 108.77449 * 305.36725 * 15 14 13 17 17 C 1.36933 * 120.63043 * 233.58316 * 16 15 14 18 18 H 1.08003 * 119.99602 * 152.01588 * 17 16 15 19 19 C 1.38808 * 120.00085 * 332.02242 * 17 16 15 20 20 N 1.31618 * 119.99941 * 342.86353 * 19 17 16 21 21 Si 1.86797 * 120.00297 * 162.87231 * 19 17 16 22 22 H 1.48504 * 109.46966 * 266.22377 * 21 19 17 23 23 H 1.48497 * 109.47662 * 146.22235 * 21 19 17 24 24 H 1.48508 * 109.47112 * 26.21892 * 21 19 17 25 25 C 1.46927 * 118.73585 * 53.85922 * 16 15 14 26 26 N 1.31524 * 119.01501 * 179.97438 * 2 1 3 27 27 H 1.08995 * 109.47205 * 270.01898 * 1 2 3 28 28 H 1.08996 * 109.47285 * 30.02650 * 1 2 3 29 29 H 1.09005 * 109.47206 * 150.01770 * 1 2 3 30 30 H 1.08004 * 120.44010 * 179.97438 * 4 3 2 31 31 H 0.96999 * 119.99925 * 359.97438 * 10 8 7 32 32 H 1.08998 * 109.45908 * 58.66176 * 13 11 10 33 33 H 1.08996 * 109.44905 * 298.69651 * 13 11 10 34 34 H 1.08998 * 109.49616 * 301.41601 * 14 13 11 35 35 H 1.08995 * 109.50042 * 181.31845 * 14 13 11 36 36 H 1.08995 * 109.58834 * 185.57941 * 15 14 13 37 37 H 1.08996 * 109.69956 * 65.22271 * 15 14 13 38 38 H 0.97001 * 120.00343 * 179.97438 * 20 19 17 39 39 H 1.09004 * 109.58859 * 65.93053 * 25 16 15 40 40 H 1.09008 * 109.58209 * 186.35024 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1469 1.1536 0.0000 4 6 3.4675 1.2006 0.0005 5 6 4.1867 0.0113 0.0069 6 17 5.9226 0.0196 0.0154 7 6 3.4757 -1.1905 0.0009 8 6 4.1911 -2.4904 0.0013 9 8 5.4057 -2.5152 0.0018 10 7 3.4934 -3.6435 0.0013 11 6 4.1998 -4.9269 0.0023 12 1 5.1138 -4.8401 -0.5851 13 6 3.3011 -6.0051 -0.6076 14 6 4.0501 -7.3393 -0.6371 15 6 4.4006 -7.7554 0.7950 16 7 5.1418 -6.6613 1.4373 17 6 6.3588 -6.8916 2.0212 18 1 7.0877 -6.0968 2.0817 19 6 6.6557 -8.1463 2.5351 20 7 5.6879 -9.0059 2.7730 21 14 8.4289 -8.6149 2.8895 22 1 8.9978 -9.3235 1.7150 23 1 8.4779 -9.5057 4.0765 24 1 9.2209 -7.3877 3.1585 25 6 4.5494 -5.3168 1.4465 26 7 2.1449 -1.1502 0.0005 27 1 -0.3633 0.0003 1.0276 28 1 -0.3633 0.8897 -0.5142 29 1 -0.3634 -0.8902 -0.5136 30 1 3.9812 2.1506 0.0001 31 1 2.5236 -3.6236 0.0013 32 1 3.0289 -5.7189 -1.6235 33 1 2.3986 -6.1086 -0.0053 34 1 4.9656 -7.2298 -1.2185 35 1 3.4181 -8.1014 -1.0930 36 1 5.0191 -8.6526 0.7739 37 1 3.4864 -7.9548 1.3539 38 1 5.8953 -9.8829 3.1318 39 1 3.6457 -5.3198 2.0561 40 1 5.2662 -4.6045 1.8555 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001008757608.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:00:27 Heat of formation + Delta-G solvation = 13.800035 kcal Electronic energy + Delta-G solvation = -25021.844632 eV Core-core repulsion = 21283.665612 eV Total energy + Delta-G solvation = -3738.179020 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.109 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.53103 -40.82399 -38.99612 -37.83463 -36.04489 -35.25757 -34.16964 -34.01791 -32.35346 -30.43676 -29.41483 -27.28468 -26.96783 -24.57702 -23.89362 -23.42339 -21.83184 -21.12547 -19.58711 -18.85264 -18.70585 -17.32543 -17.15936 -16.94836 -16.70607 -16.30830 -15.97126 -15.68884 -15.22552 -15.06917 -14.80438 -14.58622 -14.22356 -14.06138 -13.93435 -13.43866 -13.26667 -13.04895 -12.87966 -12.78649 -12.64097 -12.59053 -12.52115 -12.17701 -12.11045 -11.98126 -11.76885 -11.59612 -11.38407 -11.33298 -10.63533 -10.41282 -10.38332 -10.15244 -8.70981 -7.91311 -5.37481 -0.91691 -0.45286 0.79894 1.44148 1.45345 1.52539 1.55359 1.73304 2.44534 2.47845 2.57535 2.79783 3.16984 3.22971 3.37152 3.70828 3.79079 3.88875 4.07963 4.22142 4.26638 4.46473 4.53661 4.73696 4.74423 4.78926 4.80283 4.89835 5.00075 5.08527 5.12208 5.24927 5.25211 5.36210 5.42718 5.53383 5.62598 5.76035 6.33821 6.36955 6.66659 7.00474 7.12187 7.80825 8.31143 9.14278 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.017365 B = 0.003300 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.075780 B = 8482.666308 C = 9555.644315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.313 3.687 3 N -0.496 5.496 4 C 0.182 3.818 5 C -0.121 4.121 6 Cl -0.009 7.009 7 C 0.136 3.864 8 C 0.555 3.445 9 O -0.533 6.533 10 N -0.685 5.685 11 C 0.142 3.858 12 H 0.067 0.933 13 C -0.105 4.105 14 C -0.128 4.128 15 C 0.171 3.829 16 N -0.606 5.606 17 C -0.268 4.268 18 H 0.055 0.945 19 C -0.043 4.043 20 N -0.929 5.929 21 Si 0.965 3.035 22 H -0.282 1.282 23 H -0.289 1.289 24 H -0.275 1.275 25 C 0.145 3.855 26 N -0.488 5.488 27 H 0.104 0.896 28 H 0.105 0.895 29 H 0.101 0.899 30 H 0.220 0.780 31 H 0.419 0.581 32 H 0.087 0.913 33 H 0.075 0.925 34 H 0.050 0.950 35 H 0.086 0.914 36 H 0.055 0.945 37 H 0.005 0.995 38 H 0.252 0.748 39 H 0.019 0.981 40 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.324 20.002 -9.319 25.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.047 3.953 3 N -0.210 5.210 4 C 0.013 3.987 5 C -0.154 4.154 6 Cl 0.020 6.980 7 C -0.012 4.012 8 C 0.338 3.662 9 O -0.408 6.408 10 N -0.336 5.336 11 C 0.036 3.964 12 H 0.085 0.915 13 C -0.143 4.143 14 C -0.168 4.168 15 C 0.046 3.954 16 N -0.330 5.330 17 C -0.398 4.398 18 H 0.072 0.928 19 C -0.239 4.239 20 N -0.574 5.574 21 Si 0.793 3.207 22 H -0.208 1.208 23 H -0.216 1.216 24 H -0.200 1.200 25 C 0.018 3.982 26 N -0.206 5.206 27 H 0.123 0.877 28 H 0.124 0.876 29 H 0.119 0.881 30 H 0.236 0.764 31 H 0.256 0.744 32 H 0.105 0.895 33 H 0.093 0.907 34 H 0.068 0.932 35 H 0.104 0.896 36 H 0.074 0.926 37 H 0.023 0.977 38 H 0.062 0.938 39 H 0.037 0.963 40 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -12.274 19.750 -9.243 25.023 hybrid contribution 1.879 -0.557 0.659 2.068 sum -10.395 19.193 -8.584 23.455 Atomic orbital electron populations 1.20824 0.81835 1.05987 1.05614 1.24176 1.00214 0.82272 0.88646 1.68464 1.09048 1.30207 1.13305 1.23980 0.89004 0.97809 0.87937 1.23051 0.89670 0.96445 1.06234 1.98452 1.04984 1.98620 1.95989 1.21472 0.90396 0.93575 0.95731 1.18026 0.86639 0.83654 0.77875 1.90902 1.13566 1.86905 1.49427 1.45778 1.11283 1.04392 1.72163 1.21493 0.95772 0.81683 0.97480 0.91460 1.21616 0.97812 0.93357 1.01470 1.22009 0.99847 0.97047 0.97861 1.20730 0.93770 0.91099 0.89800 1.44237 1.19990 1.04356 1.64392 1.19418 0.91300 0.97212 1.31908 0.92768 1.25722 1.01137 0.98327 0.98685 1.70167 1.31644 1.07744 1.47871 0.85292 0.80397 0.77785 0.77203 1.20831 1.21580 1.19976 1.21286 0.95629 0.86954 0.94308 1.68356 1.06583 1.31934 1.13744 0.87739 0.87610 0.88072 0.76404 0.74369 0.89455 0.90654 0.93159 0.89592 0.92648 0.97716 0.93847 0.96262 0.94887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.78 10.31 71.24 0.73 -0.05 16 2 C 0.31 5.51 7.64 138.79 1.06 6.57 16 3 N -0.50 -8.63 10.31 -187.77 -1.94 -10.57 16 4 C 0.18 3.02 11.14 84.83 0.94 3.96 16 5 C -0.12 -2.78 6.40 22.79 0.15 -2.63 16 6 Cl -0.01 -0.24 26.25 -2.72 -0.07 -0.31 16 7 C 0.14 3.55 6.80 41.98 0.29 3.84 16 8 C 0.55 17.71 7.79 86.94 0.68 18.39 16 9 O -0.53 -20.61 13.81 -3.66 -0.05 -20.66 16 10 N -0.68 -20.15 5.07 -443.86 -2.25 -22.41 16 11 C 0.14 5.02 2.62 45.21 0.12 5.14 16 12 H 0.07 2.74 7.58 -2.39 -0.02 2.72 16 13 C -0.10 -3.12 5.35 30.62 0.16 -2.95 16 14 C -0.13 -4.56 6.08 30.67 0.19 -4.37 16 15 C 0.17 8.18 5.30 86.36 0.46 8.63 16 16 N -0.61 -31.67 2.99 -698.23 -2.09 -33.75 16 17 C -0.27 -15.60 9.58 84.03 0.81 -14.80 16 18 H 0.05 3.21 7.89 -2.91 -0.02 3.19 16 19 C -0.04 -2.45 4.91 84.86 0.42 -2.04 16 20 N -0.93 -55.31 11.20 21.65 0.24 -55.07 16 21 Si 0.97 46.37 29.59 68.60 2.03 48.40 16 22 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 23 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 24 H -0.27 -12.93 7.11 99.48 0.71 -12.22 16 25 C 0.15 6.50 6.12 86.51 0.53 7.03 16 26 N -0.49 -10.68 9.59 -177.05 -1.70 -12.38 16 27 H 0.10 0.75 8.14 -2.39 -0.02 0.74 16 28 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.10 0.77 8.14 -2.38 -0.02 0.75 16 30 H 0.22 1.92 8.06 -2.91 -0.02 1.90 16 31 H 0.42 10.06 7.99 -92.71 -0.74 9.32 16 32 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 36 H 0.06 3.01 6.05 -2.39 -0.01 2.99 16 37 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 38 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 39 H 0.02 0.86 8.14 -2.38 -0.02 0.84 16 40 H 0.03 1.60 7.93 -2.38 -0.02 1.59 16 Total: -1.00 -71.70 347.26 1.04 -70.66 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: 0.34 Total: 9.36 kcal Atomic # 6 Polarization: 20.20 SS G_CDS: 6.53 Total: 26.72 kcal Atomic # 7 Polarization: -126.44 SS G_CDS: -7.73 Total: -134.18 kcal Atomic # 8 Polarization: -20.61 SS G_CDS: -0.05 Total: -20.66 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 2.03 Total: 48.40 kcal Atomic # 17 Polarization: -0.24 SS G_CDS: -0.07 Total: -0.31 kcal Total: -71.70 1.04 -70.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008757608.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.462 kcal (2) G-P(sol) polarization free energy of solvation -71.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds