Wall clock time and date at job start Tue Mar 31 2020 13:34:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 120.00218 * 2 1 4 4 H 1.48498 * 109.47175 * 240.00128 * 3 2 1 5 5 H 1.48497 * 109.46977 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47175 * 120.00087 * 3 2 1 7 7 C 1.38807 * 119.99373 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99829 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00396 * 0.02562 * 7 2 1 10 10 C 1.47015 * 125.64654 * 359.97339 * 9 7 2 11 11 C 1.54325 * 107.27065 * 178.96333 * 10 9 7 12 12 C 1.55157 * 102.94374 * 337.80787 * 11 10 9 13 13 H 1.09000 * 111.00346 * 277.43176 * 12 11 10 14 14 N 1.46495 * 111.00828 * 153.57764 * 12 11 10 15 15 C 1.34777 * 120.00234 * 155.00372 * 14 12 11 16 16 O 1.21610 * 119.99918 * 359.97438 * 15 14 12 17 17 C 1.47383 * 119.99919 * 180.02562 * 15 14 12 18 18 C 1.41400 * 126.42136 * 270.02115 * 17 15 14 19 19 Cl 1.73596 * 126.00440 * 0.02562 * 18 17 15 20 20 N 1.30533 * 107.98555 * 179.97438 * 18 17 15 21 21 N 1.39932 * 108.89838 * 0.02562 * 20 18 17 22 22 H 0.96992 * 125.74036 * 180.02562 * 21 20 18 23 23 C 1.34239 * 108.52059 * 359.72400 * 21 20 18 24 24 C 1.50705 * 126.27873 * 180.30408 * 23 21 20 25 25 C 1.52997 * 117.49692 * 8.90136 * 24 23 21 26 26 C 1.52995 * 117.49860 * 300.23789 * 24 23 21 27 27 C 1.47425 * 125.64463 * 179.97438 * 9 7 2 28 28 H 0.97006 * 119.99857 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.88350 * 59.54542 * 10 9 7 30 30 H 1.08998 * 109.88602 * 298.38208 * 10 9 7 31 31 H 1.08996 * 110.72124 * 219.44887 * 11 10 9 32 32 H 1.08999 * 110.87305 * 96.24314 * 11 10 9 33 33 H 0.97000 * 119.99509 * 334.99522 * 14 12 11 34 34 H 1.08996 * 115.54723 * 154.56775 * 24 23 21 35 35 H 1.08993 * 117.50467 * 359.97438 * 25 24 23 36 36 H 1.09002 * 117.49876 * 145.02256 * 25 24 23 37 37 H 1.08996 * 117.50321 * 214.97815 * 26 24 23 38 38 H 1.09000 * 117.49899 * 0.02562 * 26 24 23 39 39 H 1.08999 * 110.36633 * 85.27589 * 27 9 7 40 40 H 1.08996 * 110.37033 * 322.93969 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0101 -1.2022 -0.0005 8 1 3.0901 -1.2023 -0.0001 9 7 1.3254 -2.3881 -0.0016 10 6 -0.1376 -2.5327 -0.0017 11 6 -0.4487 -4.0440 -0.0297 12 6 0.8516 -4.6556 -0.6149 13 1 0.8567 -4.5949 -1.7032 14 7 1.0288 -6.0393 -0.1675 15 6 1.7590 -6.8982 -0.9062 16 8 2.2705 -6.5246 -1.9443 17 6 1.9367 -8.2904 -0.4563 18 6 2.9734 -8.7792 0.3717 19 17 4.2705 -7.8416 1.0440 20 7 2.7830 -10.0592 0.5427 21 7 1.6340 -10.4440 -0.1573 22 1 1.2686 -11.3416 -0.1966 23 6 1.1190 -9.3606 -0.7598 24 6 -0.1226 -9.3205 -1.6130 25 6 -0.9931 -10.5780 -1.6531 26 6 -0.1454 -10.1944 -2.8687 27 6 1.9333 -3.7311 -0.0028 28 1 -0.4850 0.8401 0.0004 29 1 -0.5577 -2.0513 -0.8849 30 1 -0.5545 -2.0851 0.9005 31 1 -1.2986 -4.2508 -0.6800 32 1 -0.6336 -4.4211 0.9761 33 1 0.6206 -6.3373 0.6604 34 1 -0.6287 -8.3563 -1.6616 35 1 -0.6677 -11.4345 -1.0628 36 1 -2.0719 -10.4412 -1.7286 37 1 -0.6668 -9.8054 -3.7432 38 1 0.7374 -10.7986 -3.0774 39 1 2.1664 -4.0429 1.0153 40 1 2.8326 -3.7400 -0.6186 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001014681542.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:36 Heat of formation + Delta-G solvation = 88.052420 kcal Electronic energy + Delta-G solvation = -24860.327740 eV Core-core repulsion = 21125.368545 eV Total energy + Delta-G solvation = -3734.959195 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.109 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.92372 -39.24054 -37.67657 -37.10518 -36.88650 -33.93754 -32.07033 -31.60320 -30.73365 -29.07729 -27.08216 -24.82359 -24.17056 -23.02465 -22.56039 -21.69061 -20.33226 -20.15993 -19.67432 -18.23730 -16.96057 -16.60772 -16.24451 -15.85834 -15.50800 -15.33396 -14.60125 -14.57303 -14.28102 -13.90193 -13.65396 -12.93112 -12.72031 -12.48176 -12.38070 -12.15426 -12.13223 -11.88927 -11.76000 -11.38658 -11.21676 -10.98691 -10.89742 -10.83778 -10.70811 -10.36734 -10.10455 -9.87211 -9.78950 -9.68796 -9.63858 -8.98431 -8.70357 -8.55256 -6.79731 -5.67568 -3.00694 1.12808 1.22405 1.89459 2.49986 2.68711 3.26159 3.44314 3.46778 3.49145 3.51676 3.84992 4.16613 4.34188 4.53704 4.55805 4.60249 4.94144 5.03111 5.18372 5.31926 5.34490 5.46640 5.47476 5.54218 5.58653 5.67957 5.78459 5.84539 6.22620 6.36273 6.44316 6.58355 6.63770 6.75609 6.93536 7.02340 7.57280 7.60913 7.73926 7.85420 8.28558 8.42648 9.25982 9.85902 10.50923 11.44336 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.017831 B = 0.003158 C = 0.002807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.883558 B = 8865.138127 C = 9973.012397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.009 4.009 3 Si 0.913 3.087 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.226 4.226 8 H 0.078 0.922 9 N -0.604 5.604 10 C 0.180 3.820 11 C -0.149 4.149 12 C 0.127 3.873 13 H 0.098 0.902 14 N -0.705 5.705 15 C 0.594 3.406 16 O -0.525 6.525 17 C -0.256 4.256 18 C 0.160 3.840 19 Cl 0.028 6.972 20 N -0.275 5.275 21 N -0.449 5.449 22 H 0.445 0.555 23 C 0.174 3.826 24 C -0.107 4.107 25 C -0.171 4.171 26 C -0.156 4.156 27 C 0.129 3.871 28 H 0.252 0.748 29 H 0.049 0.951 30 H 0.046 0.954 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.398 0.602 34 H 0.139 0.861 35 H 0.093 0.907 36 H 0.112 0.888 37 H 0.112 0.888 38 H 0.099 0.901 39 H 0.021 0.979 40 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.173 -24.718 -0.643 24.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.205 4.205 3 Si 0.743 3.257 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.354 4.354 8 H 0.096 0.904 9 N -0.331 5.331 10 C 0.055 3.945 11 C -0.188 4.188 12 C 0.022 3.978 13 H 0.116 0.884 14 N -0.355 5.355 15 C 0.377 3.623 16 O -0.400 6.400 17 C -0.272 4.272 18 C -0.032 4.032 19 Cl 0.056 6.944 20 N -0.100 5.100 21 N -0.158 5.158 22 H 0.291 0.709 23 C 0.042 3.958 24 C -0.127 4.127 25 C -0.208 4.208 26 C -0.194 4.194 27 C 0.002 3.998 28 H 0.063 0.937 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.232 0.768 34 H 0.156 0.844 35 H 0.111 0.889 36 H 0.130 0.870 37 H 0.130 0.870 38 H 0.118 0.882 39 H 0.039 0.961 40 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -2.262 -25.124 -0.775 25.238 hybrid contribution -0.004 1.020 0.242 1.049 sum -2.267 -24.104 -0.533 24.216 Atomic orbital electron populations 1.69939 1.04850 1.25108 1.57317 1.24788 0.95743 0.97625 1.02303 0.86181 0.78437 0.83112 0.77939 1.21124 1.21629 1.21204 1.19035 0.90494 0.82295 1.43576 0.90429 1.44378 1.01613 0.99807 1.87269 1.21137 0.84559 0.87401 1.01434 1.23182 0.95804 1.00048 0.99745 1.22350 0.96946 0.78441 1.00087 0.88389 1.45997 1.52343 1.11360 1.25805 1.17070 0.78529 0.83119 0.83593 1.90817 1.47438 1.77996 1.23757 1.19798 1.00089 0.95820 1.11478 1.22607 0.92685 0.90946 0.97005 1.98448 1.44753 1.67941 1.83297 1.77182 1.02290 1.12084 1.18448 1.45765 1.20671 1.10177 1.39176 0.70855 1.20359 0.94454 0.86299 0.94691 1.20739 0.93719 0.98706 0.99501 1.23086 0.99114 0.96802 1.01776 1.23131 1.02417 1.01573 0.92240 1.21826 0.94849 0.86059 0.97112 0.93746 0.93253 0.93618 0.91656 0.92034 0.76790 0.84355 0.88860 0.86982 0.87002 0.88232 0.96141 0.93820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.15 10.31 55.49 0.57 -26.57 16 2 C -0.01 -0.25 5.49 -17.43 -0.10 -0.34 16 3 Si 0.91 22.42 29.55 -169.99 -5.02 17.40 16 4 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.23 -6.43 10.28 -15.06 -0.15 -6.58 16 8 H 0.08 2.15 7.83 -52.48 -0.41 1.74 16 9 N -0.60 -15.68 3.39 -170.09 -0.58 -16.26 16 10 C 0.18 4.29 5.37 -3.07 -0.02 4.27 16 11 C -0.15 -2.62 6.60 -24.90 -0.16 -2.78 16 12 C 0.13 2.28 3.42 -65.79 -0.23 2.06 16 13 H 0.10 1.93 7.54 -51.93 -0.39 1.54 16 14 N -0.71 -10.31 5.19 -52.82 -0.27 -10.58 16 15 C 0.59 9.31 7.31 -12.54 -0.09 9.22 16 16 O -0.52 -10.34 16.75 5.27 0.09 -10.25 16 17 C -0.26 -3.37 5.88 -105.04 -0.62 -3.99 16 18 C 0.16 2.13 7.89 -16.90 -0.13 1.99 16 19 Cl 0.03 0.37 29.19 -51.86 -1.51 -1.14 16 20 N -0.27 -3.27 12.64 33.18 0.42 -2.85 16 21 N -0.45 -3.87 7.17 33.86 0.24 -3.63 16 22 H 0.45 2.19 7.95 -182.73 -1.45 0.74 16 23 C 0.17 1.72 6.80 -81.60 -0.55 1.16 16 24 C -0.11 -0.80 6.02 -91.77 -0.55 -1.35 16 25 C -0.17 -0.75 10.14 -26.69 -0.27 -1.02 16 26 C -0.16 -0.91 10.24 -26.69 -0.27 -1.18 16 27 C 0.13 2.80 6.93 -2.54 -0.02 2.79 16 28 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 29 H 0.05 1.30 7.38 -51.93 -0.38 0.92 16 30 H 0.05 1.20 7.51 -51.93 -0.39 0.81 16 31 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.06 0.97 8.00 -51.93 -0.42 0.55 16 33 H 0.40 4.82 8.55 -40.82 -0.35 4.47 16 34 H 0.14 1.11 8.14 -51.93 -0.42 0.68 16 35 H 0.09 0.27 7.16 -51.93 -0.37 -0.10 16 36 H 0.11 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.11 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 355.11 15.07 5.35 5.35 Total: -1.00 -34.25 355.11 -10.14 -44.39 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: -6.26 Total: -0.09 kcal Atomic # 6 Polarization: 7.40 SS G_CDS: -3.17 Total: 4.24 kcal Atomic # 7 Polarization: -60.28 SS G_CDS: 0.38 Total: -59.89 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: 0.09 Total: -10.25 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Atomic # 17 Polarization: 0.37 SS G_CDS: -1.51 Total: -1.14 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.25 -10.14 -44.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001014681542.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.443 kcal (2) G-P(sol) polarization free energy of solvation -34.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.390 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds