Wall clock time and date at job start Tue Mar 31 2020 13:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 120.00218 * 2 1 4 4 H 1.48498 * 109.47175 * 240.00128 * 3 2 1 5 5 H 1.48497 * 109.46977 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47175 * 120.00087 * 3 2 1 7 7 C 1.38807 * 119.99373 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99829 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00396 * 0.02562 * 7 2 1 10 10 C 1.47015 * 125.64654 * 359.97339 * 9 7 2 11 11 C 1.54325 * 107.27065 * 178.96333 * 10 9 7 12 12 C 1.55157 * 102.94374 * 337.80787 * 11 10 9 13 13 H 1.09000 * 111.00346 * 277.43176 * 12 11 10 14 14 N 1.46495 * 111.00828 * 153.57764 * 12 11 10 15 15 C 1.34777 * 120.00234 * 155.00372 * 14 12 11 16 16 O 1.21610 * 119.99918 * 359.97438 * 15 14 12 17 17 C 1.47383 * 119.99919 * 180.02562 * 15 14 12 18 18 C 1.41400 * 126.42136 * 270.02115 * 17 15 14 19 19 Cl 1.73596 * 126.00440 * 0.02562 * 18 17 15 20 20 N 1.30533 * 107.98555 * 179.97438 * 18 17 15 21 21 N 1.39932 * 108.89838 * 0.02562 * 20 18 17 22 22 H 0.96992 * 125.74036 * 180.02562 * 21 20 18 23 23 C 1.34239 * 108.52059 * 359.72400 * 21 20 18 24 24 C 1.50705 * 126.27873 * 180.30408 * 23 21 20 25 25 C 1.52997 * 117.49692 * 8.90136 * 24 23 21 26 26 C 1.52995 * 117.49860 * 300.23789 * 24 23 21 27 27 C 1.47425 * 125.64463 * 179.97438 * 9 7 2 28 28 H 0.97006 * 119.99857 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.88350 * 59.54542 * 10 9 7 30 30 H 1.08998 * 109.88602 * 298.38208 * 10 9 7 31 31 H 1.08996 * 110.72124 * 219.44887 * 11 10 9 32 32 H 1.08999 * 110.87305 * 96.24314 * 11 10 9 33 33 H 0.97000 * 119.99509 * 334.99522 * 14 12 11 34 34 H 1.08996 * 115.54723 * 154.56775 * 24 23 21 35 35 H 1.08993 * 117.50467 * 359.97438 * 25 24 23 36 36 H 1.09002 * 117.49876 * 145.02256 * 25 24 23 37 37 H 1.08996 * 117.50321 * 214.97815 * 26 24 23 38 38 H 1.09000 * 117.49899 * 0.02562 * 26 24 23 39 39 H 1.08999 * 110.36633 * 85.27589 * 27 9 7 40 40 H 1.08996 * 110.37033 * 322.93969 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0101 -1.2022 -0.0005 8 1 3.0901 -1.2023 -0.0001 9 7 1.3254 -2.3881 -0.0016 10 6 -0.1376 -2.5327 -0.0017 11 6 -0.4487 -4.0440 -0.0297 12 6 0.8516 -4.6556 -0.6149 13 1 0.8567 -4.5949 -1.7032 14 7 1.0288 -6.0393 -0.1675 15 6 1.7590 -6.8982 -0.9062 16 8 2.2705 -6.5246 -1.9443 17 6 1.9367 -8.2904 -0.4563 18 6 2.9734 -8.7792 0.3717 19 17 4.2705 -7.8416 1.0440 20 7 2.7830 -10.0592 0.5427 21 7 1.6340 -10.4440 -0.1573 22 1 1.2686 -11.3416 -0.1966 23 6 1.1190 -9.3606 -0.7598 24 6 -0.1226 -9.3205 -1.6130 25 6 -0.9931 -10.5780 -1.6531 26 6 -0.1454 -10.1944 -2.8687 27 6 1.9333 -3.7311 -0.0028 28 1 -0.4850 0.8401 0.0004 29 1 -0.5577 -2.0513 -0.8849 30 1 -0.5545 -2.0851 0.9005 31 1 -1.2986 -4.2508 -0.6800 32 1 -0.6336 -4.4211 0.9761 33 1 0.6206 -6.3373 0.6604 34 1 -0.6287 -8.3563 -1.6616 35 1 -0.6677 -11.4345 -1.0628 36 1 -2.0719 -10.4412 -1.7286 37 1 -0.6668 -9.8054 -3.7432 38 1 0.7374 -10.7986 -3.0774 39 1 2.1664 -4.0429 1.0153 40 1 2.8326 -3.7400 -0.6186 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001014681542.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:35 Heat of formation + Delta-G solvation = 64.171403 kcal Electronic energy + Delta-G solvation = -24861.363299 eV Core-core repulsion = 21125.368545 eV Total energy + Delta-G solvation = -3735.994754 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.109 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.79600 -40.60788 -38.78528 -38.28942 -37.77298 -35.58258 -33.80250 -32.59873 -31.77995 -30.85723 -28.78662 -26.55011 -25.21606 -23.73632 -23.35369 -22.53080 -22.05715 -21.72263 -20.85778 -19.21436 -18.79081 -17.78858 -17.23156 -16.87251 -16.66931 -16.38408 -16.32080 -15.87712 -15.47586 -15.43025 -14.71252 -14.55287 -14.12309 -13.89943 -13.67612 -13.48552 -13.39024 -12.94727 -12.74361 -12.72605 -12.48034 -12.39673 -12.16224 -12.07129 -12.05952 -11.90271 -11.79170 -11.55374 -11.46571 -11.11035 -10.69395 -10.53943 -10.11402 -9.87484 -8.89762 -7.84656 -5.20404 0.30424 0.32734 0.91616 1.44261 1.46982 1.50095 1.56237 1.71238 2.23280 2.52335 2.80341 3.23940 3.33729 3.59669 3.64593 3.71237 3.79566 3.92218 4.01280 4.05477 4.09467 4.24083 4.42043 4.60993 4.66236 4.71908 4.75414 4.90751 4.95044 5.00729 5.02594 5.11037 5.16505 5.43978 5.52857 5.67328 5.76277 5.88346 6.14144 6.20570 6.53829 7.11283 7.20440 7.76650 8.40005 9.25102 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.017831 B = 0.003158 C = 0.002807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.883558 B = 8865.138127 C = 9973.012397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.061 4.061 3 Si 0.978 3.022 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.248 4.248 8 H 0.076 0.924 9 N -0.625 5.625 10 C 0.184 3.816 11 C -0.126 4.126 12 C 0.147 3.853 13 H 0.081 0.919 14 N -0.689 5.689 15 C 0.603 3.397 16 O -0.570 6.570 17 C -0.289 4.289 18 C 0.149 3.851 19 Cl 0.016 6.984 20 N -0.286 5.286 21 N -0.426 5.426 22 H 0.464 0.536 23 C 0.202 3.798 24 C -0.134 4.134 25 C -0.142 4.142 26 C -0.158 4.158 27 C 0.127 3.873 28 H 0.249 0.751 29 H 0.015 0.985 30 H 0.017 0.983 31 H 0.094 0.906 32 H 0.090 0.910 33 H 0.414 0.586 34 H 0.133 0.867 35 H 0.114 0.886 36 H 0.127 0.873 37 H 0.116 0.884 38 H 0.100 0.900 39 H 0.029 0.971 40 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.328 -27.188 -0.410 27.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.254 4.254 3 Si 0.806 3.194 4 H -0.206 1.206 5 H -0.216 1.216 6 H -0.203 1.203 7 C -0.377 4.377 8 H 0.094 0.906 9 N -0.352 5.352 10 C 0.059 3.941 11 C -0.165 4.165 12 C 0.041 3.959 13 H 0.099 0.901 14 N -0.340 5.340 15 C 0.388 3.612 16 O -0.448 6.448 17 C -0.305 4.305 18 C -0.043 4.043 19 Cl 0.044 6.956 20 N -0.111 5.111 21 N -0.137 5.137 22 H 0.314 0.686 23 C 0.068 3.932 24 C -0.155 4.155 25 C -0.179 4.179 26 C -0.196 4.196 27 C 0.001 3.999 28 H 0.058 0.942 29 H 0.034 0.966 30 H 0.035 0.965 31 H 0.112 0.888 32 H 0.108 0.892 33 H 0.252 0.748 34 H 0.150 0.850 35 H 0.132 0.868 36 H 0.145 0.855 37 H 0.135 0.865 38 H 0.119 0.881 39 H 0.047 0.953 40 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -3.422 -27.672 -0.502 27.887 hybrid contribution 0.338 1.694 0.139 1.733 sum -3.084 -25.978 -0.363 26.163 Atomic orbital electron populations 1.70148 1.06048 1.25464 1.57900 1.25611 0.96713 1.00789 1.02291 0.85162 0.77229 0.78845 0.78141 1.20569 1.21554 1.20347 1.19378 0.90879 0.83825 1.43653 0.90639 1.44661 1.02765 1.00626 1.87180 1.20948 0.83308 0.91421 0.98410 1.22995 0.96225 0.95117 1.02133 1.21857 0.95641 0.79581 0.98864 0.90055 1.45750 1.52213 1.09712 1.26336 1.17348 0.77207 0.84019 0.82641 1.90794 1.49148 1.79053 1.25831 1.19572 1.01896 0.95116 1.13920 1.22618 0.92676 0.91400 0.97577 1.98437 1.45341 1.68340 1.83484 1.77131 1.03547 1.11349 1.19111 1.45742 1.19437 1.10859 1.37684 0.68590 1.20580 0.94123 0.85398 0.93098 1.20836 0.93703 1.00104 1.00810 1.23265 0.99517 0.95104 0.99971 1.23238 1.03065 1.00921 0.92375 1.21926 0.95270 0.85364 0.97373 0.94208 0.96623 0.96516 0.88795 0.89191 0.74847 0.84956 0.86814 0.85468 0.86534 0.88134 0.95292 0.95727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.05 10.31 21.65 0.22 -56.83 16 2 C -0.06 -3.53 5.49 84.86 0.47 -3.06 16 3 Si 0.98 46.77 29.55 68.60 2.03 48.80 16 4 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 5 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 6 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 7 C -0.25 -14.51 10.28 84.03 0.86 -13.65 16 8 H 0.08 4.30 7.83 -2.91 -0.02 4.27 16 9 N -0.63 -33.31 3.39 -692.04 -2.35 -35.66 16 10 C 0.18 8.97 5.37 86.73 0.47 9.43 16 11 C -0.13 -4.25 6.60 31.78 0.21 -4.04 16 12 C 0.15 5.22 3.42 46.38 0.16 5.38 16 13 H 0.08 3.23 7.54 -2.39 -0.02 3.22 16 14 N -0.69 -19.35 5.19 -439.29 -2.28 -21.63 16 15 C 0.60 18.62 7.31 86.65 0.63 19.25 16 16 O -0.57 -22.77 16.75 -4.06 -0.07 -22.84 16 17 C -0.29 -7.28 5.88 -20.13 -0.12 -7.40 16 18 C 0.15 3.83 7.89 85.66 0.68 4.51 16 19 Cl 0.02 0.43 29.19 -2.72 -0.08 0.35 16 20 N -0.29 -6.31 12.64 -48.95 -0.62 -6.93 16 21 N -0.43 -6.15 7.17 -46.79 -0.34 -6.49 16 22 H 0.46 2.82 7.95 -213.44 -1.70 1.13 16 23 C 0.20 3.52 6.80 42.15 0.29 3.81 16 24 C -0.13 -1.64 6.02 -11.54 -0.07 -1.71 16 25 C -0.14 -0.66 10.14 30.62 0.31 -0.35 16 26 C -0.16 -1.38 10.24 30.62 0.31 -1.07 16 27 C 0.13 5.63 6.93 86.85 0.60 6.23 16 28 H 0.25 14.53 8.31 -92.70 -0.77 13.76 16 29 H 0.02 0.85 7.38 -2.39 -0.02 0.83 16 30 H 0.02 0.90 7.51 -2.39 -0.02 0.88 16 31 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 32 H 0.09 2.56 8.00 -2.39 -0.02 2.54 16 33 H 0.41 9.12 8.55 -92.71 -0.79 8.32 16 34 H 0.13 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.11 0.08 7.16 -2.39 -0.02 0.06 16 36 H 0.13 0.30 8.14 -2.39 -0.02 0.28 16 37 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.10 0.87 8.14 -2.39 -0.02 0.86 16 39 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -77.37 355.11 -0.07 -77.45 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -1.39 Total: 6.45 kcal Atomic # 6 Polarization: 12.52 SS G_CDS: 4.80 Total: 17.32 kcal Atomic # 7 Polarization: -122.17 SS G_CDS: -5.36 Total: -127.53 kcal Atomic # 8 Polarization: -22.77 SS G_CDS: -0.07 Total: -22.84 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 2.03 Total: 48.80 kcal Atomic # 17 Polarization: 0.43 SS G_CDS: -0.08 Total: 0.35 kcal Total: -77.37 -0.07 -77.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001014681542.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.618 kcal (2) G-P(sol) polarization free energy of solvation -77.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.447 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds