Wall clock time and date at job start Tue Mar 31 2020 13:34:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86798 * 119.99991 * 2 1 4 4 H 1.48504 * 109.47064 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47133 * 299.99943 * 3 2 1 6 6 H 1.48494 * 109.47530 * 60.00155 * 3 2 1 7 7 C 1.38817 * 120.00135 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00241 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99743 * 359.97438 * 7 2 1 10 10 C 1.47028 * 125.64804 * 359.97438 * 9 7 2 11 11 C 1.54319 * 107.26947 * 178.96334 * 10 9 7 12 12 C 1.55161 * 102.94308 * 337.80091 * 11 10 9 13 13 H 1.08995 * 111.00756 * 277.39549 * 12 11 10 14 14 N 1.46498 * 111.00437 * 153.57739 * 12 11 10 15 15 C 1.34777 * 119.99828 * 154.72466 * 14 12 11 16 16 O 1.21583 * 119.99943 * 0.28074 * 15 14 12 17 17 C 1.47667 * 120.00216 * 180.27873 * 15 14 12 18 18 N 1.31824 * 126.45988 * 0.02562 * 17 15 14 19 19 N 1.28467 * 110.13748 * 179.97438 * 18 17 15 20 20 H 0.96999 * 124.93372 * 179.97438 * 19 18 17 21 21 C 1.35639 * 110.13112 * 0.02562 * 19 18 17 22 22 C 1.50703 * 126.43522 * 179.97438 * 21 19 18 23 23 C 1.53002 * 117.49787 * 8.77244 * 22 21 19 24 24 C 1.52997 * 117.49729 * 300.10949 * 22 21 19 25 25 C 1.35460 * 107.13181 * 359.72168 * 21 19 18 26 26 Cl 1.73604 * 127.24085 * 180.26212 * 25 21 19 27 27 C 1.47419 * 125.64825 * 180.02562 * 9 7 2 28 28 H 0.97008 * 120.00069 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.88555 * 59.53819 * 10 9 7 30 30 H 1.09003 * 109.88039 * 298.37394 * 10 9 7 31 31 H 1.09005 * 110.71664 * 219.44151 * 11 10 9 32 32 H 1.08999 * 110.88029 * 96.23721 * 11 10 9 33 33 H 0.97001 * 120.00384 * 335.00912 * 14 12 11 34 34 H 1.09002 * 115.54879 * 154.43815 * 22 21 19 35 35 H 1.09000 * 117.49728 * 359.97438 * 23 22 21 36 36 H 1.08993 * 117.50090 * 145.01814 * 23 22 21 37 37 H 1.09000 * 117.49524 * 214.97243 * 24 22 21 38 38 H 1.09003 * 117.50123 * 0.02562 * 24 22 21 39 39 H 1.09002 * 110.36625 * 85.27534 * 27 9 7 40 40 H 1.08996 * 110.36984 * 322.94892 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8915 2.3965 1.2124 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1376 -2.5327 0.0005 11 6 -0.4485 -4.0440 -0.0266 12 6 0.8513 -4.6558 -0.6126 13 1 0.8552 -4.5961 -1.7009 14 7 1.0289 -6.0393 -0.1648 15 6 1.7539 -6.9000 -0.9065 16 8 2.2647 -6.5267 -1.9448 17 6 1.9277 -8.2962 -0.4583 18 7 1.4332 -8.8340 0.6389 19 7 1.7777 -10.0690 0.7202 20 1 1.5310 -10.6681 1.4421 21 6 2.5376 -10.4130 -0.3494 22 6 3.1368 -11.7685 -0.6227 23 6 2.7069 -12.9261 0.2806 24 6 4.1114 -12.3320 0.4135 25 6 2.6520 -9.3109 -1.1286 26 17 3.5097 -9.1713 -2.6315 27 6 1.9334 -3.7311 -0.0005 28 1 -0.4851 0.8401 -0.0004 29 1 -0.5584 -2.0517 -0.8824 30 1 -0.5537 -2.0848 0.9030 31 1 -1.2991 -4.2511 -0.6760 32 1 -0.6326 -4.4209 0.9795 33 1 0.6213 -6.3371 0.6635 34 1 3.3313 -11.9938 -1.6713 35 1 1.9909 -12.7072 1.0728 36 1 2.6188 -13.9130 -0.1736 37 1 4.9467 -12.9284 0.0466 38 1 4.3188 -11.7225 1.2931 39 1 2.1665 -4.0420 1.0179 40 1 2.8328 -3.7405 -0.6162 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015094247.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:30 Heat of formation + Delta-G solvation = 88.676867 kcal Electronic energy + Delta-G solvation = -24389.619527 eV Core-core repulsion = 20654.687410 eV Total energy + Delta-G solvation = -3734.932117 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.109 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.11510 -39.35201 -37.75441 -37.12174 -36.57753 -33.97296 -32.26664 -31.61310 -30.81632 -29.09087 -27.17922 -24.90287 -24.21006 -23.35737 -22.97041 -21.46178 -20.34057 -20.22024 -19.68141 -18.31394 -17.18674 -16.74529 -16.33967 -16.05215 -15.74293 -15.02218 -14.59360 -14.46054 -14.39466 -14.00025 -13.81058 -13.02741 -12.73605 -12.35700 -12.24420 -12.23468 -12.15519 -11.76759 -11.71192 -11.49702 -11.14615 -10.96705 -10.86744 -10.79188 -10.71834 -10.32594 -10.03389 -9.84946 -9.78943 -9.64654 -9.63617 -8.96331 -8.67129 -8.54579 -6.78617 -5.66665 -2.99815 1.21719 1.52276 1.80917 2.59649 3.22058 3.25955 3.42133 3.44644 3.50287 3.52839 3.86609 4.09724 4.23145 4.33086 4.47078 4.56034 4.90483 4.96538 5.11601 5.25449 5.35122 5.39812 5.47234 5.49630 5.60418 5.69520 5.81358 5.86035 6.24945 6.38460 6.44695 6.48778 6.64252 6.76056 7.02970 7.33450 7.59410 7.63418 7.78371 7.87540 8.29262 8.40586 9.26856 9.86756 10.51943 11.45381 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.027534 B = 0.002480 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.684066 B =11288.064159 C =11655.227339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.010 4.010 3 Si 0.913 3.087 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.291 1.291 7 C -0.224 4.224 8 H 0.079 0.921 9 N -0.604 5.604 10 C 0.179 3.821 11 C -0.149 4.149 12 C 0.127 3.873 13 H 0.100 0.900 14 N -0.701 5.701 15 C 0.595 3.405 16 O -0.514 6.514 17 C 0.014 3.986 18 N -0.241 5.241 19 N -0.376 5.376 20 H 0.449 0.551 21 C 0.059 3.941 22 C -0.091 4.091 23 C -0.174 4.174 24 C -0.163 4.163 25 C -0.094 4.094 26 Cl -0.003 7.003 27 C 0.129 3.871 28 H 0.251 0.749 29 H 0.050 0.950 30 H 0.046 0.954 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.403 0.597 34 H 0.136 0.864 35 H 0.092 0.908 36 H 0.109 0.891 37 H 0.108 0.892 38 H 0.098 0.902 39 H 0.020 0.980 40 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.037 -29.180 1.878 29.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.206 4.206 3 Si 0.744 3.256 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.352 4.352 8 H 0.097 0.903 9 N -0.331 5.331 10 C 0.054 3.946 11 C -0.188 4.188 12 C 0.022 3.978 13 H 0.118 0.882 14 N -0.351 5.351 15 C 0.377 3.623 16 O -0.387 6.387 17 C -0.149 4.149 18 N -0.076 5.076 19 N -0.091 5.091 20 H 0.295 0.705 21 C -0.067 4.067 22 C -0.111 4.111 23 C -0.212 4.212 24 C -0.200 4.200 25 C -0.132 4.132 26 Cl 0.026 6.974 27 C 0.002 3.998 28 H 0.062 0.938 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.237 0.763 34 H 0.153 0.847 35 H 0.110 0.890 36 H 0.127 0.873 37 H 0.127 0.873 38 H 0.117 0.883 39 H 0.038 0.962 40 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 2.787 -28.323 1.884 28.522 hybrid contribution 0.571 0.201 0.113 0.616 sum 3.358 -28.122 1.997 28.392 Atomic orbital electron populations 1.69960 1.04864 1.24891 1.57454 1.24804 0.95758 0.97668 1.02379 0.86020 0.78756 0.83695 0.77171 1.20489 1.21753 1.21823 1.19127 0.90537 0.82250 1.43296 0.90312 1.44402 1.01653 0.99805 1.87225 1.21148 0.84518 0.87418 1.01476 1.23190 0.95851 0.99952 0.99825 1.22385 0.97013 0.78144 1.00214 0.88208 1.45844 1.52258 1.11275 1.25757 1.16764 0.79472 0.82055 0.83998 1.90863 1.47756 1.76851 1.23198 1.22037 1.02785 0.96477 0.93607 1.73682 1.20611 0.93385 1.19951 1.43118 1.37920 1.08450 1.19644 0.70540 1.20110 1.00320 0.95851 0.90463 1.20521 1.04043 0.87474 0.99014 1.23060 0.98294 0.97878 1.01930 1.23139 0.93596 1.02921 1.00368 1.20409 1.05403 0.93198 0.94145 1.98369 1.74260 1.97856 1.26959 1.21833 0.94844 0.86087 0.97066 0.93828 0.93180 0.93582 0.91553 0.91993 0.76254 0.84653 0.88974 0.87254 0.87314 0.88327 0.96210 0.93736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.51 10.31 55.49 0.57 -26.94 16 2 C -0.01 -0.30 5.49 -17.43 -0.10 -0.39 16 3 Si 0.91 22.63 29.55 -169.99 -5.02 17.61 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 6 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 7 C -0.22 -6.44 10.28 -15.06 -0.15 -6.59 16 8 H 0.08 2.21 7.83 -52.49 -0.41 1.80 16 9 N -0.60 -15.96 3.39 -170.06 -0.58 -16.54 16 10 C 0.18 4.39 5.37 -3.06 -0.02 4.38 16 11 C -0.15 -2.78 6.60 -24.90 -0.16 -2.94 16 12 C 0.13 2.41 3.43 -65.77 -0.23 2.19 16 13 H 0.10 2.05 7.53 -51.93 -0.39 1.66 16 14 N -0.70 -11.16 5.19 -52.71 -0.27 -11.43 16 15 C 0.59 9.98 7.82 -12.41 -0.10 9.88 16 16 O -0.51 -10.18 15.51 5.29 0.08 -10.10 16 17 C 0.01 0.19 7.13 -82.76 -0.59 -0.40 16 18 N -0.24 -2.77 11.91 33.42 0.40 -2.37 16 19 N -0.38 -3.04 6.76 33.62 0.23 -2.81 16 20 H 0.45 1.90 7.94 -190.44 -1.51 0.39 16 21 C 0.06 0.53 6.75 -81.90 -0.55 -0.02 16 22 C -0.09 -0.54 6.12 -91.77 -0.56 -1.10 16 23 C -0.17 -0.60 10.15 -26.69 -0.27 -0.87 16 24 C -0.16 -0.69 10.24 -26.69 -0.27 -0.97 16 25 C -0.09 -1.18 6.79 -39.31 -0.27 -1.45 16 26 Cl 0.00 -0.04 28.02 -51.86 -1.45 -1.49 16 27 C 0.13 2.87 6.93 -2.52 -0.02 2.86 16 28 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 29 H 0.05 1.35 7.38 -51.93 -0.38 0.97 16 30 H 0.05 1.23 7.51 -51.93 -0.39 0.84 16 31 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 32 H 0.06 1.03 8.00 -51.93 -0.42 0.62 16 33 H 0.40 5.53 8.29 -40.82 -0.34 5.19 16 34 H 0.14 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.09 0.21 7.16 -51.93 -0.37 -0.16 16 36 H 0.11 0.26 8.14 -51.93 -0.42 -0.16 16 37 H 0.11 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 352.02 15.07 5.30 5.30 Total: -1.00 -34.20 352.02 -10.34 -44.53 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -6.31 Total: -0.34 kcal Atomic # 6 Polarization: 7.86 SS G_CDS: -3.29 Total: 4.58 kcal Atomic # 7 Polarization: -60.44 SS G_CDS: 0.35 Total: -60.09 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: 0.08 Total: -10.10 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.61 kcal Atomic # 17 Polarization: -0.04 SS G_CDS: -1.45 Total: -1.49 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -34.20 -10.34 -44.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015094247.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.209 kcal (2) G-P(sol) polarization free energy of solvation -34.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds