Wall clock time and date at job start Tue Mar 31 2020 13:34:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86798 * 119.99991 * 2 1 4 4 H 1.48504 * 109.47064 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47133 * 299.99943 * 3 2 1 6 6 H 1.48494 * 109.47530 * 60.00155 * 3 2 1 7 7 C 1.38817 * 120.00135 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00241 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99743 * 359.97438 * 7 2 1 10 10 C 1.47028 * 125.64804 * 359.97438 * 9 7 2 11 11 C 1.54319 * 107.26947 * 178.96334 * 10 9 7 12 12 C 1.55161 * 102.94308 * 337.80091 * 11 10 9 13 13 H 1.08995 * 111.00756 * 277.39549 * 12 11 10 14 14 N 1.46498 * 111.00437 * 153.57739 * 12 11 10 15 15 C 1.34777 * 119.99828 * 154.72466 * 14 12 11 16 16 O 1.21583 * 119.99943 * 0.28074 * 15 14 12 17 17 C 1.47667 * 120.00216 * 180.27873 * 15 14 12 18 18 N 1.31824 * 126.45988 * 0.02562 * 17 15 14 19 19 N 1.28467 * 110.13748 * 179.97438 * 18 17 15 20 20 H 0.96999 * 124.93372 * 179.97438 * 19 18 17 21 21 C 1.35639 * 110.13112 * 0.02562 * 19 18 17 22 22 C 1.50703 * 126.43522 * 179.97438 * 21 19 18 23 23 C 1.53002 * 117.49787 * 8.77244 * 22 21 19 24 24 C 1.52997 * 117.49729 * 300.10949 * 22 21 19 25 25 C 1.35460 * 107.13181 * 359.72168 * 21 19 18 26 26 Cl 1.73604 * 127.24085 * 180.26212 * 25 21 19 27 27 C 1.47419 * 125.64825 * 180.02562 * 9 7 2 28 28 H 0.97008 * 120.00069 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.88555 * 59.53819 * 10 9 7 30 30 H 1.09003 * 109.88039 * 298.37394 * 10 9 7 31 31 H 1.09005 * 110.71664 * 219.44151 * 11 10 9 32 32 H 1.08999 * 110.88029 * 96.23721 * 11 10 9 33 33 H 0.97001 * 120.00384 * 335.00912 * 14 12 11 34 34 H 1.09002 * 115.54879 * 154.43815 * 22 21 19 35 35 H 1.09000 * 117.49728 * 359.97438 * 23 22 21 36 36 H 1.08993 * 117.50090 * 145.01814 * 23 22 21 37 37 H 1.09000 * 117.49524 * 214.97243 * 24 22 21 38 38 H 1.09003 * 117.50123 * 0.02562 * 24 22 21 39 39 H 1.09002 * 110.36625 * 85.27534 * 27 9 7 40 40 H 1.08996 * 110.36984 * 322.94892 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8915 2.3965 1.2124 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1376 -2.5327 0.0005 11 6 -0.4485 -4.0440 -0.0266 12 6 0.8513 -4.6558 -0.6126 13 1 0.8552 -4.5961 -1.7009 14 7 1.0289 -6.0393 -0.1648 15 6 1.7539 -6.9000 -0.9065 16 8 2.2647 -6.5267 -1.9448 17 6 1.9277 -8.2962 -0.4583 18 7 1.4332 -8.8340 0.6389 19 7 1.7777 -10.0690 0.7202 20 1 1.5310 -10.6681 1.4421 21 6 2.5376 -10.4130 -0.3494 22 6 3.1368 -11.7685 -0.6227 23 6 2.7069 -12.9261 0.2806 24 6 4.1114 -12.3320 0.4135 25 6 2.6520 -9.3109 -1.1286 26 17 3.5097 -9.1713 -2.6315 27 6 1.9334 -3.7311 -0.0005 28 1 -0.4851 0.8401 -0.0004 29 1 -0.5584 -2.0517 -0.8824 30 1 -0.5537 -2.0848 0.9030 31 1 -1.2991 -4.2511 -0.6760 32 1 -0.6326 -4.4209 0.9795 33 1 0.6213 -6.3371 0.6635 34 1 3.3313 -11.9938 -1.6713 35 1 1.9909 -12.7072 1.0728 36 1 2.6188 -13.9130 -0.1736 37 1 4.9467 -12.9284 0.0466 38 1 4.3188 -11.7225 1.2931 39 1 2.1665 -4.0420 1.0179 40 1 2.8328 -3.7405 -0.6162 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001015094247.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:29 Heat of formation + Delta-G solvation = 65.042681 kcal Electronic energy + Delta-G solvation = -24390.644383 eV Core-core repulsion = 20654.687410 eV Total energy + Delta-G solvation = -3735.956972 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.109 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.95787 -40.75968 -38.86586 -38.14796 -37.51212 -35.64410 -33.87968 -32.84320 -31.68296 -30.94330 -28.92298 -26.67504 -25.32343 -24.27289 -23.27763 -22.27510 -22.10607 -21.79769 -21.05034 -19.01498 -19.00120 -18.00459 -17.37640 -17.12360 -16.71157 -16.61730 -15.97858 -15.80700 -15.55540 -15.45153 -14.97330 -14.48508 -14.16370 -13.95611 -13.70530 -13.51806 -13.15308 -12.95270 -12.79505 -12.53640 -12.45450 -12.41464 -12.14062 -12.00279 -11.99243 -11.84472 -11.78347 -11.58491 -11.46140 -11.11658 -10.72496 -10.53713 -10.10218 -9.75355 -8.91994 -7.86198 -5.22323 0.28159 0.63443 0.98086 1.45882 1.47463 1.57882 1.74524 2.08075 2.18326 2.50311 2.87409 3.18607 3.32521 3.35518 3.63322 3.67452 3.78493 3.95410 4.01813 4.04832 4.07030 4.20746 4.47841 4.57732 4.64784 4.71480 4.75479 4.87637 4.97403 4.99742 5.06108 5.07804 5.19944 5.42510 5.48006 5.64210 5.73695 5.80696 6.18476 6.37119 6.63611 7.08973 7.12449 7.74338 8.38125 9.24232 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.027534 B = 0.002480 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.684066 B =11288.064159 C =11655.227339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.064 4.064 3 Si 0.981 3.019 4 H -0.269 1.269 5 H -0.291 1.291 6 H -0.288 1.288 7 C -0.245 4.245 8 H 0.078 0.922 9 N -0.625 5.625 10 C 0.185 3.815 11 C -0.128 4.128 12 C 0.146 3.854 13 H 0.082 0.918 14 N -0.689 5.689 15 C 0.594 3.406 16 O -0.551 6.551 17 C -0.014 4.014 18 N -0.238 5.238 19 N -0.351 5.351 20 H 0.468 0.532 21 C 0.086 3.914 22 C -0.115 4.115 23 C -0.154 4.154 24 C -0.159 4.159 25 C -0.124 4.124 26 Cl -0.017 7.017 27 C 0.129 3.871 28 H 0.249 0.751 29 H 0.016 0.984 30 H 0.018 0.982 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.417 0.583 34 H 0.136 0.864 35 H 0.108 0.892 36 H 0.124 0.876 37 H 0.119 0.881 38 H 0.097 0.903 39 H 0.030 0.970 40 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.148 -31.981 3.287 32.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.257 4.257 3 Si 0.809 3.191 4 H -0.193 1.193 5 H -0.217 1.217 6 H -0.215 1.215 7 C -0.374 4.374 8 H 0.096 0.904 9 N -0.352 5.352 10 C 0.060 3.940 11 C -0.167 4.167 12 C 0.040 3.960 13 H 0.101 0.899 14 N -0.340 5.340 15 C 0.379 3.621 16 O -0.427 6.427 17 C -0.175 4.175 18 N -0.074 5.074 19 N -0.070 5.070 20 H 0.318 0.682 21 C -0.041 4.041 22 C -0.135 4.135 23 C -0.191 4.191 24 C -0.196 4.196 25 C -0.162 4.162 26 Cl 0.012 6.988 27 C 0.002 3.998 28 H 0.058 0.942 29 H 0.034 0.966 30 H 0.036 0.964 31 H 0.109 0.891 32 H 0.108 0.892 33 H 0.254 0.746 34 H 0.154 0.846 35 H 0.126 0.874 36 H 0.142 0.858 37 H 0.138 0.862 38 H 0.116 0.884 39 H 0.048 0.952 40 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 2.890 -31.181 3.336 31.492 hybrid contribution 0.574 0.936 -0.272 1.131 sum 3.464 -30.246 3.065 30.597 Atomic orbital electron populations 1.70165 1.06150 1.25375 1.58084 1.25658 0.96743 1.00948 1.02367 0.84980 0.78024 0.79243 0.76883 1.19325 1.21744 1.21468 1.19459 0.90911 0.83677 1.43317 0.90437 1.44682 1.02699 1.00685 1.87155 1.20940 0.83430 0.91147 0.98491 1.23007 0.96236 0.95358 1.02076 1.21900 0.95807 0.79292 0.98980 0.89946 1.45589 1.52374 1.09797 1.26278 1.17116 0.78470 0.83160 0.83350 1.90838 1.49151 1.77873 1.24834 1.21590 1.05190 0.95411 0.95301 1.73605 1.20350 0.94622 1.18866 1.43212 1.36404 1.07678 1.19744 0.68158 1.20434 0.98399 0.96158 0.89126 1.20635 1.06242 0.86750 0.99877 1.23240 0.97776 0.97271 1.00834 1.23235 0.94497 1.02603 0.99286 1.20585 1.06757 0.94182 0.94646 1.98354 1.74596 1.97960 1.27890 1.21922 0.95204 0.85257 0.97411 0.94195 0.96589 0.96358 0.89138 0.89207 0.74607 0.84618 0.87415 0.85757 0.86247 0.88430 0.95215 0.95343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.01 10.31 21.65 0.22 -57.79 16 2 C -0.06 -3.76 5.49 84.86 0.47 -3.30 16 3 Si 0.98 47.21 29.55 68.60 2.03 49.24 16 4 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 5 H -0.29 -13.91 7.11 99.48 0.71 -13.21 16 6 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 7 C -0.24 -14.41 10.28 84.03 0.86 -13.55 16 8 H 0.08 4.44 7.83 -2.91 -0.02 4.42 16 9 N -0.63 -33.86 3.39 -691.94 -2.35 -36.21 16 10 C 0.19 9.28 5.37 86.73 0.47 9.75 16 11 C -0.13 -4.63 6.60 31.78 0.21 -4.42 16 12 C 0.15 5.52 3.43 46.40 0.16 5.67 16 13 H 0.08 3.45 7.53 -2.39 -0.02 3.43 16 14 N -0.69 -21.31 5.19 -438.94 -2.28 -23.59 16 15 C 0.59 19.88 7.82 86.73 0.68 20.56 16 16 O -0.55 -22.39 15.51 -3.98 -0.06 -22.45 16 17 C -0.01 -0.38 7.13 42.45 0.30 -0.08 16 18 N -0.24 -4.95 11.91 -48.17 -0.57 -5.52 16 19 N -0.35 -4.67 6.76 -47.55 -0.32 -4.99 16 20 H 0.47 2.16 7.94 -219.99 -1.75 0.41 16 21 C 0.09 1.36 6.75 41.33 0.28 1.64 16 22 C -0.12 -1.06 6.12 -11.54 -0.07 -1.13 16 23 C -0.15 -0.44 10.15 30.62 0.31 -0.13 16 24 C -0.16 -0.85 10.24 30.62 0.31 -0.53 16 25 C -0.12 -3.02 6.79 22.44 0.15 -2.87 16 26 Cl -0.02 -0.43 28.02 -2.72 -0.08 -0.51 16 27 C 0.13 5.81 6.93 86.87 0.60 6.41 16 28 H 0.25 14.66 8.31 -92.70 -0.77 13.89 16 29 H 0.02 0.89 7.38 -2.39 -0.02 0.87 16 30 H 0.02 1.00 7.51 -2.39 -0.02 0.98 16 31 H 0.09 2.88 8.14 -2.38 -0.02 2.86 16 32 H 0.09 2.78 8.00 -2.39 -0.02 2.76 16 33 H 0.42 10.60 8.29 -92.71 -0.77 9.83 16 34 H 0.14 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.11 -0.02 7.16 -2.39 -0.02 -0.04 16 36 H 0.12 0.06 8.14 -2.39 -0.02 0.04 16 37 H 0.12 0.41 8.14 -2.39 -0.02 0.39 16 38 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 39 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -77.15 352.02 -0.09 -77.24 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -1.41 Total: 6.53 kcal Atomic # 6 Polarization: 13.30 SS G_CDS: 4.73 Total: 18.03 kcal Atomic # 7 Polarization: -122.80 SS G_CDS: -5.30 Total: -128.10 kcal Atomic # 8 Polarization: -22.39 SS G_CDS: -0.06 Total: -22.45 kcal Atomic # 14 Polarization: 47.21 SS G_CDS: 2.03 Total: 49.24 kcal Atomic # 17 Polarization: -0.43 SS G_CDS: -0.08 Total: -0.51 kcal Total: -77.15 -0.09 -77.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015094247.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.285 kcal (2) G-P(sol) polarization free energy of solvation -77.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.243 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds