Wall clock time and date at job start Tue Mar 31 2020 13:39:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 119.99861 * 2 1 4 4 H 1.48497 * 109.47634 * 274.25051 * 3 2 1 5 5 H 1.48505 * 109.47095 * 34.25404 * 3 2 1 6 6 H 1.48504 * 109.47026 * 154.24894 * 3 2 1 7 7 C 1.38813 * 120.00212 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99641 * 339.30129 * 7 2 1 9 9 N 1.36938 * 120.00025 * 159.29771 * 7 2 1 10 10 C 1.46848 * 120.38200 * 331.82507 * 9 7 2 11 11 C 1.53355 * 108.80951 * 236.88237 * 10 9 7 12 12 C 1.53185 * 108.76817 * 308.68313 * 11 10 9 13 13 C 1.52936 * 117.67627 * 269.95995 * 12 11 10 14 14 C 1.52813 * 117.71599 * 201.11587 * 12 11 10 15 15 H 1.08998 * 117.50244 * 215.12393 * 14 12 11 16 16 N 1.46501 * 117.50034 * 0.14171 * 14 12 11 17 17 C 1.34780 * 119.99716 * 204.89540 * 16 14 12 18 18 O 1.21736 * 120.00458 * 0.02562 * 17 16 14 19 19 C 1.46295 * 119.99924 * 179.97438 * 17 16 14 20 20 S 1.75827 * 125.46401 * 0.02562 * 19 17 16 21 21 C 1.70594 * 91.60664 * 179.97438 * 20 19 17 22 22 C 1.33725 * 111.04088 * 359.97438 * 21 20 19 23 23 C 1.36923 * 125.46719 * 180.02562 * 19 17 16 24 24 F 1.35100 * 123.40235 * 0.02562 * 23 19 17 25 25 C 1.53190 * 115.07661 * 55.44768 * 12 11 10 26 26 C 1.46842 * 120.38435 * 151.79966 * 9 7 2 27 27 H 0.96999 * 119.99822 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.57982 * 117.08608 * 10 9 7 29 29 H 1.08995 * 109.58416 * 356.67741 * 10 9 7 30 30 H 1.08997 * 109.58870 * 188.90373 * 11 10 9 31 31 H 1.08999 * 109.58878 * 68.47043 * 11 10 9 32 32 H 1.09001 * 117.49637 * 144.82961 * 13 12 11 33 33 H 1.08997 * 117.51773 * 359.76392 * 13 12 11 34 34 H 0.96999 * 119.99944 * 24.89453 * 16 14 12 35 35 H 1.08004 * 124.47778 * 180.02562 * 21 20 19 36 36 H 1.08006 * 122.45683 * 179.72524 * 22 21 20 37 37 H 1.09003 * 109.58535 * 64.34394 * 25 12 11 38 38 H 1.08996 * 109.58717 * 184.77299 * 25 12 11 39 39 H 1.08992 * 109.57906 * 242.92580 * 26 9 7 40 40 H 1.09000 * 109.57384 * 3.32278 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4078 2.0984 -1.3961 5 1 1.4954 2.6251 0.7881 6 1 3.5898 1.4159 0.6083 7 6 2.0103 -1.2021 -0.0005 8 1 1.5226 -2.1074 0.3297 9 7 3.3134 -1.2402 -0.4198 10 6 3.8057 -0.2675 -1.4036 11 6 4.3784 -1.0274 -2.6063 12 6 5.3751 -2.0742 -2.0988 13 6 6.8388 -1.6530 -1.9604 14 6 6.4165 -2.6009 -3.0852 15 1 6.7087 -3.6474 -2.9977 16 7 6.3898 -2.0641 -4.4480 17 6 6.8924 -2.7883 -5.4676 18 8 7.3682 -3.8887 -5.2561 19 6 6.8653 -2.2524 -6.8286 20 16 6.2150 -0.6871 -7.2959 21 6 6.6084 -0.9588 -8.9334 22 6 7.1896 -2.1521 -9.0960 23 6 7.3423 -2.8894 -7.9428 24 9 7.9064 -4.1166 -7.9138 25 6 4.8162 -3.0539 -1.0622 26 6 4.2346 -2.2537 0.1097 27 1 -0.4850 0.8400 0.0004 28 1 4.5867 0.3447 -0.9528 29 1 2.9836 0.3687 -1.7314 30 1 4.8881 -0.3295 -3.2705 31 1 3.5701 -1.5230 -3.1441 32 1 7.4081 -2.0761 -1.1328 33 1 7.0965 -0.6300 -2.2344 34 1 6.0105 -1.1874 -4.6166 35 1 6.4146 -0.2591 -9.7330 36 1 7.5104 -2.5139 -10.0618 37 1 4.0315 -3.6587 -1.5168 38 1 5.6162 -3.7004 -0.7019 39 1 5.0420 -1.7644 0.6543 40 1 3.6947 -2.9246 0.7778 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016600571.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:36 Heat of formation + Delta-G solvation = 8.671968 kcal Electronic energy + Delta-G solvation = -24877.778646 eV Core-core repulsion = 21121.501001 eV Total energy + Delta-G solvation = -3756.277645 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.105 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.12915 -40.14365 -38.72839 -37.58012 -35.76529 -33.35596 -31.76151 -30.59167 -30.17501 -28.64148 -25.47462 -24.21038 -23.15137 -22.82513 -21.51480 -20.65291 -20.08789 -19.14659 -18.39157 -17.33491 -16.57780 -16.44098 -16.16514 -15.71444 -15.23470 -14.90654 -14.80917 -14.47101 -14.20563 -14.00445 -13.94173 -13.76309 -13.04373 -12.90307 -12.78315 -12.46553 -12.29721 -12.04997 -11.98893 -11.75512 -11.58583 -11.27285 -10.81261 -10.61877 -10.40456 -10.25382 -10.03226 -9.81390 -9.56492 -9.47364 -9.44174 -8.92694 -8.78891 -8.50268 -6.96298 -5.96702 -3.32476 -0.05837 0.86872 1.28605 1.75084 2.82263 2.85987 3.27699 3.46026 3.49095 3.86321 4.00070 4.40673 4.50128 4.50729 4.76085 4.81299 4.88923 4.94504 5.09655 5.20433 5.28036 5.34995 5.40040 5.69355 5.82791 5.84501 5.88660 5.91304 6.02283 6.13237 6.28949 6.32392 6.37911 6.42193 6.58321 6.66365 6.68190 6.93591 7.26058 7.96511 7.96520 8.32330 8.93957 9.70864 10.08989 11.19377 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.018473 B = 0.003234 C = 0.002924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.376682 B = 8655.810409 C = 9573.169726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.023 3.977 3 Si 0.882 3.118 4 H -0.289 1.289 5 H -0.304 1.304 6 H -0.270 1.270 7 C -0.260 4.260 8 H 0.085 0.915 9 N -0.604 5.604 10 C 0.133 3.867 11 C -0.100 4.100 12 C -0.101 4.101 13 C -0.183 4.183 14 C 0.075 3.925 15 H 0.137 0.863 16 N -0.691 5.691 17 C 0.594 3.406 18 O -0.522 6.522 19 C -0.317 4.317 20 S 0.260 5.740 21 C -0.208 4.208 22 C -0.179 4.179 23 C 0.164 3.836 24 F -0.103 7.103 25 C -0.099 4.099 26 C 0.153 3.847 27 H 0.262 0.738 28 H 0.027 0.973 29 H 0.072 0.928 30 H 0.047 0.953 31 H 0.072 0.928 32 H 0.102 0.898 33 H 0.093 0.907 34 H 0.398 0.602 35 H 0.182 0.818 36 H 0.159 0.841 37 H 0.069 0.931 38 H 0.058 0.942 39 H 0.024 0.976 40 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.605 -0.115 -17.034 23.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.176 4.176 3 Si 0.713 3.287 4 H -0.217 1.217 5 H -0.232 1.232 6 H -0.195 1.195 7 C -0.389 4.389 8 H 0.103 0.897 9 N -0.327 5.327 10 C 0.007 3.993 11 C -0.139 4.139 12 C -0.102 4.102 13 C -0.221 4.221 14 C -0.030 4.030 15 H 0.155 0.845 16 N -0.340 5.340 17 C 0.380 3.620 18 O -0.399 6.399 19 C -0.438 4.438 20 S 0.526 5.474 21 C -0.346 4.346 22 C -0.211 4.211 23 C 0.129 3.871 24 F -0.081 7.081 25 C -0.138 4.138 26 C 0.027 3.973 27 H 0.072 0.928 28 H 0.044 0.956 29 H 0.090 0.910 30 H 0.065 0.935 31 H 0.091 0.909 32 H 0.120 0.880 33 H 0.112 0.888 34 H 0.234 0.766 35 H 0.199 0.801 36 H 0.177 0.823 37 H 0.087 0.913 38 H 0.077 0.923 39 H 0.042 0.958 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 15.112 0.329 -16.066 22.059 hybrid contribution 1.034 0.167 -1.137 1.546 sum 16.146 0.496 -17.204 23.598 Atomic orbital electron populations 1.69843 1.05757 1.26522 1.52977 1.25306 0.95215 0.97568 0.99507 0.86945 0.80220 0.84739 0.76840 1.21741 1.23183 1.19481 1.18949 0.85128 0.94729 1.40046 0.89733 1.44278 1.08607 1.34551 1.45280 1.21274 0.97217 0.91988 0.88853 1.21655 0.97250 0.96188 0.98815 1.21969 0.90079 0.99693 0.98460 1.23603 0.98304 0.99956 1.00247 1.21894 1.05583 0.98104 0.77455 0.84532 1.45214 1.61313 1.20797 1.06684 1.16588 0.78255 0.84756 0.82389 1.90875 1.45584 1.19550 1.83892 1.24673 1.17758 1.03240 0.98159 1.83268 1.54294 1.11473 0.98395 1.25140 1.04735 1.01639 1.03081 1.19859 1.06333 0.95439 0.99477 1.16894 0.95859 0.82206 0.92147 1.91586 1.81352 1.38277 1.96910 1.21690 0.99642 0.96280 0.96198 1.20883 0.92457 0.91048 0.92962 0.92789 0.95557 0.90960 0.93473 0.90891 0.87996 0.88830 0.76597 0.80114 0.82314 0.91264 0.92303 0.95760 0.91637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.49 13.97 55.49 0.78 -26.72 16 2 C 0.02 0.65 5.23 -17.43 -0.09 0.56 16 3 Si 0.88 21.85 24.40 -169.99 -4.15 17.71 16 4 H -0.29 -6.84 6.66 56.52 0.38 -6.46 16 5 H -0.30 -7.70 7.11 56.52 0.40 -7.30 16 6 H -0.27 -6.57 6.65 56.52 0.38 -6.19 16 7 C -0.26 -7.14 10.00 -15.06 -0.15 -7.29 16 8 H 0.09 2.49 8.06 -52.49 -0.42 2.06 16 9 N -0.60 -13.93 2.71 -172.26 -0.47 -14.40 16 10 C 0.13 2.76 4.23 -3.67 -0.02 2.74 16 11 C -0.10 -1.66 5.37 -26.45 -0.14 -1.80 16 12 C -0.10 -1.52 1.94 -154.44 -0.30 -1.82 16 13 C -0.18 -2.37 9.87 -26.75 -0.26 -2.63 16 14 C 0.07 1.03 6.13 -68.01 -0.42 0.62 16 15 H 0.14 2.00 7.40 -51.93 -0.38 1.62 16 16 N -0.69 -8.91 5.34 -55.31 -0.30 -9.20 16 17 C 0.59 8.53 7.77 -13.02 -0.10 8.43 16 18 O -0.52 -9.32 15.70 5.16 0.08 -9.24 16 19 C -0.32 -3.67 6.45 -36.82 -0.24 -3.91 16 20 S 0.26 1.96 22.14 -107.50 -2.38 -0.42 16 21 C -0.21 -1.26 10.91 29.15 0.32 -0.94 16 22 C -0.18 -1.38 10.15 -41.35 -0.42 -1.80 16 23 C 0.16 1.86 7.48 -40.25 -0.30 1.56 16 24 F -0.10 -1.40 16.42 2.25 0.04 -1.36 16 25 C -0.10 -1.58 5.83 -26.45 -0.15 -1.73 16 26 C 0.15 2.91 6.52 -3.67 -0.02 2.88 16 27 H 0.26 7.53 8.31 -40.82 -0.34 7.20 16 28 H 0.03 0.54 7.27 -51.93 -0.38 0.16 16 29 H 0.07 1.66 4.31 -51.93 -0.22 1.43 16 30 H 0.05 0.65 6.75 -51.93 -0.35 0.30 16 31 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 32 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.40 4.40 6.22 -40.82 -0.25 4.15 16 35 H 0.18 0.52 8.06 -52.48 -0.42 0.10 16 36 H 0.16 0.86 8.06 -52.48 -0.42 0.43 16 37 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.06 0.80 8.10 -51.93 -0.42 0.38 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.07 1.25 7.92 -51.93 -0.41 0.84 16 LS Contribution 340.14 15.07 5.13 5.13 Total: -1.00 -33.22 340.14 -8.56 -41.78 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -4.99 Total: 1.88 kcal Atomic # 6 Polarization: -2.85 SS G_CDS: -2.30 Total: -5.15 kcal Atomic # 7 Polarization: -50.33 SS G_CDS: 0.01 Total: -50.32 kcal Atomic # 8 Polarization: -9.32 SS G_CDS: 0.08 Total: -9.24 kcal Atomic # 9 Polarization: -1.40 SS G_CDS: 0.04 Total: -1.36 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.15 Total: 17.71 kcal Atomic # 16 Polarization: 1.96 SS G_CDS: -2.38 Total: -0.42 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -33.22 -8.56 -41.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016600571.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.451 kcal (2) G-P(sol) polarization free energy of solvation -33.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.779 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds