Wall clock time and date at job start Tue Mar 31 2020 13:39:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 119.99861 * 2 1 4 4 H 1.48497 * 109.47634 * 274.25051 * 3 2 1 5 5 H 1.48505 * 109.47095 * 34.25404 * 3 2 1 6 6 H 1.48504 * 109.47026 * 154.24894 * 3 2 1 7 7 C 1.38813 * 120.00212 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99641 * 339.30129 * 7 2 1 9 9 N 1.36938 * 120.00025 * 159.29771 * 7 2 1 10 10 C 1.46848 * 120.38200 * 331.82507 * 9 7 2 11 11 C 1.53355 * 108.80951 * 236.88237 * 10 9 7 12 12 C 1.53185 * 108.76817 * 308.68313 * 11 10 9 13 13 C 1.52936 * 117.67627 * 269.95995 * 12 11 10 14 14 C 1.52813 * 117.71599 * 201.11587 * 12 11 10 15 15 H 1.08998 * 117.50244 * 215.12393 * 14 12 11 16 16 N 1.46501 * 117.50034 * 0.14171 * 14 12 11 17 17 C 1.34780 * 119.99716 * 204.89540 * 16 14 12 18 18 O 1.21736 * 120.00458 * 0.02562 * 17 16 14 19 19 C 1.46295 * 119.99924 * 179.97438 * 17 16 14 20 20 S 1.75827 * 125.46401 * 0.02562 * 19 17 16 21 21 C 1.70594 * 91.60664 * 179.97438 * 20 19 17 22 22 C 1.33725 * 111.04088 * 359.97438 * 21 20 19 23 23 C 1.36923 * 125.46719 * 180.02562 * 19 17 16 24 24 F 1.35100 * 123.40235 * 0.02562 * 23 19 17 25 25 C 1.53190 * 115.07661 * 55.44768 * 12 11 10 26 26 C 1.46842 * 120.38435 * 151.79966 * 9 7 2 27 27 H 0.96999 * 119.99822 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.57982 * 117.08608 * 10 9 7 29 29 H 1.08995 * 109.58416 * 356.67741 * 10 9 7 30 30 H 1.08997 * 109.58870 * 188.90373 * 11 10 9 31 31 H 1.08999 * 109.58878 * 68.47043 * 11 10 9 32 32 H 1.09001 * 117.49637 * 144.82961 * 13 12 11 33 33 H 1.08997 * 117.51773 * 359.76392 * 13 12 11 34 34 H 0.96999 * 119.99944 * 24.89453 * 16 14 12 35 35 H 1.08004 * 124.47778 * 180.02562 * 21 20 19 36 36 H 1.08006 * 122.45683 * 179.72524 * 22 21 20 37 37 H 1.09003 * 109.58535 * 64.34394 * 25 12 11 38 38 H 1.08996 * 109.58717 * 184.77299 * 25 12 11 39 39 H 1.08992 * 109.57906 * 242.92580 * 26 9 7 40 40 H 1.09000 * 109.57384 * 3.32278 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4078 2.0984 -1.3961 5 1 1.4954 2.6251 0.7881 6 1 3.5898 1.4159 0.6083 7 6 2.0103 -1.2021 -0.0005 8 1 1.5226 -2.1074 0.3297 9 7 3.3134 -1.2402 -0.4198 10 6 3.8057 -0.2675 -1.4036 11 6 4.3784 -1.0274 -2.6063 12 6 5.3751 -2.0742 -2.0988 13 6 6.8388 -1.6530 -1.9604 14 6 6.4165 -2.6009 -3.0852 15 1 6.7087 -3.6474 -2.9977 16 7 6.3898 -2.0641 -4.4480 17 6 6.8924 -2.7883 -5.4676 18 8 7.3682 -3.8887 -5.2561 19 6 6.8653 -2.2524 -6.8286 20 16 6.2150 -0.6871 -7.2959 21 6 6.6084 -0.9588 -8.9334 22 6 7.1896 -2.1521 -9.0960 23 6 7.3423 -2.8894 -7.9428 24 9 7.9064 -4.1166 -7.9138 25 6 4.8162 -3.0539 -1.0622 26 6 4.2346 -2.2537 0.1097 27 1 -0.4850 0.8400 0.0004 28 1 4.5867 0.3447 -0.9528 29 1 2.9836 0.3687 -1.7314 30 1 4.8881 -0.3295 -3.2705 31 1 3.5701 -1.5230 -3.1441 32 1 7.4081 -2.0761 -1.1328 33 1 7.0965 -0.6300 -2.2344 34 1 6.0105 -1.1874 -4.6166 35 1 6.4146 -0.2591 -9.7330 36 1 7.5104 -2.5139 -10.0618 37 1 4.0315 -3.6587 -1.5168 38 1 5.6162 -3.7004 -0.7019 39 1 5.0420 -1.7644 0.6543 40 1 3.6947 -2.9246 0.7778 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016600571.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:35 Heat of formation + Delta-G solvation = -13.496405 kcal Electronic energy + Delta-G solvation = -24878.739939 eV Core-core repulsion = 21121.501001 eV Total energy + Delta-G solvation = -3757.238938 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.105 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -50.02814 -41.26407 -39.92828 -38.32829 -37.29135 -34.69518 -33.61486 -32.06581 -31.07040 -30.08736 -26.25471 -25.98259 -24.57888 -23.77291 -22.97503 -21.87208 -20.88170 -20.10866 -19.75781 -18.52672 -18.01345 -17.46423 -17.21843 -17.05003 -16.55904 -15.92770 -15.87915 -15.69877 -15.44314 -15.32577 -15.07281 -14.80547 -14.44024 -14.37508 -14.24472 -13.68552 -13.55800 -13.47068 -13.06795 -12.94656 -12.67456 -12.42702 -12.26238 -12.19202 -12.09659 -11.60574 -11.54285 -11.41272 -11.27481 -10.81714 -10.64265 -10.17807 -9.73357 -9.55094 -8.85021 -8.14203 -5.46199 -0.77602 0.21575 0.69246 1.08653 1.31297 1.44829 1.54343 1.82392 1.87481 2.44237 2.87369 3.08816 3.19687 3.36615 3.54520 3.66534 3.77648 3.87140 3.89054 4.00047 4.31690 4.37610 4.48478 4.58281 4.66006 4.70257 4.78172 4.81480 4.83872 4.90943 4.93543 4.96429 5.12423 5.15951 5.21063 5.29418 5.36877 5.51095 5.90254 6.15549 6.26155 6.94820 6.96233 7.66322 8.06143 9.06021 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.018473 B = 0.003234 C = 0.002924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.376682 B = 8655.810409 C = 9573.169726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.960 5.960 2 C -0.038 4.038 3 Si 0.950 3.050 4 H -0.269 1.269 5 H -0.314 1.314 6 H -0.258 1.258 7 C -0.251 4.251 8 H 0.046 0.954 9 N -0.619 5.619 10 C 0.127 3.873 11 C -0.091 4.091 12 C -0.118 4.118 13 C -0.160 4.160 14 C 0.079 3.921 15 H 0.126 0.874 16 N -0.683 5.683 17 C 0.591 3.409 18 O -0.570 6.570 19 C -0.359 4.359 20 S 0.306 5.694 21 C -0.181 4.181 22 C -0.190 4.190 23 C 0.146 3.854 24 F -0.126 7.126 25 C -0.090 4.090 26 C 0.149 3.851 27 H 0.261 0.739 28 H 0.041 0.959 29 H 0.049 0.951 30 H 0.083 0.917 31 H 0.053 0.947 32 H 0.117 0.883 33 H 0.110 0.890 34 H 0.408 0.592 35 H 0.223 0.777 36 H 0.182 0.818 37 H 0.048 0.952 38 H 0.087 0.913 39 H 0.042 0.958 40 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.093 2.239 -19.042 26.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.606 5.606 2 C -0.232 4.232 3 Si 0.779 3.221 4 H -0.195 1.195 5 H -0.243 1.243 6 H -0.182 1.182 7 C -0.381 4.381 8 H 0.064 0.936 9 N -0.343 5.343 10 C 0.002 3.998 11 C -0.130 4.130 12 C -0.119 4.119 13 C -0.198 4.198 14 C -0.027 4.027 15 H 0.144 0.856 16 N -0.333 5.333 17 C 0.379 3.621 18 O -0.451 6.451 19 C -0.480 4.480 20 S 0.572 5.428 21 C -0.319 4.319 22 C -0.220 4.220 23 C 0.110 3.890 24 F -0.104 7.104 25 C -0.129 4.129 26 C 0.024 3.976 27 H 0.070 0.930 28 H 0.059 0.941 29 H 0.068 0.932 30 H 0.101 0.899 31 H 0.072 0.928 32 H 0.136 0.864 33 H 0.128 0.872 34 H 0.246 0.754 35 H 0.239 0.761 36 H 0.199 0.801 37 H 0.067 0.933 38 H 0.105 0.895 39 H 0.060 0.940 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 17.639 2.696 -18.091 25.410 hybrid contribution 0.228 -0.619 -0.562 0.866 sum 17.868 2.078 -18.653 25.913 Atomic orbital electron populations 1.69988 1.07616 1.27250 1.55734 1.25971 0.95841 1.01206 1.00180 0.85835 0.78843 0.79754 0.77674 1.19547 1.24330 1.18242 1.18869 0.87080 0.93403 1.38714 0.93632 1.44412 1.07633 1.35904 1.46400 1.21341 0.96762 0.91861 0.89830 1.21492 0.97347 0.96746 0.97406 1.21831 0.91024 0.99769 0.99314 1.23724 0.95754 1.00596 0.99715 1.21759 1.04602 0.98244 0.78082 0.85599 1.45129 1.60942 1.20999 1.06188 1.16992 0.77344 0.84185 0.83583 1.90837 1.47801 1.21597 1.84848 1.24618 1.20445 1.06078 0.96876 1.83080 1.52657 1.08073 0.98994 1.25680 1.01701 1.01197 1.03348 1.20025 1.07134 0.95706 0.99179 1.17502 0.96090 0.81783 0.93659 1.91518 1.81889 1.39921 1.97118 1.21541 0.99837 0.96262 0.95265 1.21031 0.92035 0.90394 0.94163 0.92993 0.94131 0.93243 0.89905 0.92787 0.86436 0.87171 0.75419 0.76057 0.80097 0.93304 0.89452 0.94028 0.92875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.15 13.97 21.65 0.30 -59.85 16 2 C -0.04 -2.17 5.23 84.86 0.44 -1.73 16 3 Si 0.95 45.23 24.40 68.60 1.67 46.90 16 4 H -0.27 -11.79 6.66 99.48 0.66 -11.12 16 5 H -0.31 -15.37 7.11 99.48 0.71 -14.66 16 6 H -0.26 -11.65 6.65 99.48 0.66 -10.98 16 7 C -0.25 -14.18 10.00 84.03 0.84 -13.34 16 8 H 0.05 2.85 8.06 -2.91 -0.02 2.83 16 9 N -0.62 -28.36 2.71 -698.90 -1.89 -30.25 16 10 C 0.13 5.02 4.23 86.43 0.37 5.39 16 11 C -0.09 -2.81 5.37 30.78 0.17 -2.65 16 12 C -0.12 -3.28 1.94 -52.14 -0.10 -3.38 16 13 C -0.16 -3.52 9.87 30.58 0.30 -3.22 16 14 C 0.08 2.01 6.13 44.94 0.28 2.29 16 15 H 0.13 3.56 7.40 -2.39 -0.02 3.55 16 16 N -0.68 -16.37 5.34 -447.10 -2.39 -18.76 16 17 C 0.59 16.68 7.77 86.34 0.67 17.36 16 18 O -0.57 -20.84 15.70 -4.46 -0.07 -20.91 16 19 C -0.36 -7.91 6.45 24.06 0.16 -7.76 16 20 S 0.31 3.58 22.14 -56.49 -1.25 2.33 16 21 C -0.18 -1.42 10.91 66.79 0.73 -0.69 16 22 C -0.19 -2.41 10.15 21.12 0.21 -2.20 16 23 C 0.15 3.19 7.48 21.84 0.16 3.35 16 24 F -0.13 -3.52 16.42 44.97 0.74 -2.78 16 25 C -0.09 -2.77 5.83 30.77 0.18 -2.59 16 26 C 0.15 5.54 6.52 86.43 0.56 6.10 16 27 H 0.26 15.51 8.31 -92.71 -0.77 14.73 16 28 H 0.04 1.51 7.27 -2.39 -0.02 1.49 16 29 H 0.05 2.18 4.31 -2.39 -0.01 2.17 16 30 H 0.08 1.95 6.75 -2.39 -0.02 1.94 16 31 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.12 2.29 8.14 -2.39 -0.02 2.27 16 33 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.41 7.86 6.22 -92.71 -0.58 7.28 16 35 H 0.22 -0.09 8.06 -2.91 -0.02 -0.11 16 36 H 0.18 1.39 8.06 -2.91 -0.02 1.37 16 37 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.09 2.18 8.10 -2.39 -0.02 2.16 16 39 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.05 2.06 7.92 -2.39 -0.02 2.04 16 Total: -1.00 -76.90 340.14 2.50 -74.40 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: 0.42 Total: 11.98 kcal Atomic # 6 Polarization: -8.03 SS G_CDS: 4.97 Total: -3.06 kcal Atomic # 7 Polarization: -104.88 SS G_CDS: -3.98 Total: -108.86 kcal Atomic # 8 Polarization: -20.84 SS G_CDS: -0.07 Total: -20.91 kcal Atomic # 9 Polarization: -3.52 SS G_CDS: 0.74 Total: -2.78 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 1.67 Total: 46.90 kcal Atomic # 16 Polarization: 3.58 SS G_CDS: -1.25 Total: 2.33 kcal Total: -76.90 2.50 -74.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016600571.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.903 kcal (2) G-P(sol) polarization free energy of solvation -76.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds