Wall clock time and date at job start Tue Mar 31 2020 13:32:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86799 * 119.99962 * 2 1 4 4 H 1.48506 * 109.47203 * 240.00193 * 3 2 1 5 5 H 1.48493 * 109.47262 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47176 * 120.00504 * 3 2 1 7 7 C 1.38818 * 119.99823 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99424 * 197.84743 * 7 2 1 9 9 N 1.36930 * 120.00032 * 17.84813 * 7 2 1 10 10 C 1.46853 * 120.38292 * 208.90537 * 9 7 2 11 11 C 1.53345 * 108.81562 * 236.88409 * 10 9 7 12 12 C 1.53186 * 108.76759 * 308.68913 * 11 10 9 13 13 C 1.52930 * 117.64783 * 269.94236 * 12 11 10 14 14 C 1.52817 * 117.71198 * 201.11455 * 12 11 10 15 15 H 1.09006 * 117.50353 * 0.11013 * 14 12 11 16 16 N 1.46500 * 117.50440 * 215.09490 * 14 12 11 17 17 C 1.34771 * 120.00173 * 155.10106 * 16 14 12 18 18 O 1.21735 * 119.99949 * 0.02562 * 17 16 14 19 19 C 1.46339 * 120.00235 * 180.02562 * 17 16 14 20 20 C 1.36731 * 125.43913 * 180.02562 * 19 17 16 21 21 C 1.37344 * 113.33147 * 179.97438 * 20 19 17 22 22 C 1.34201 * 115.04890 * 0.02562 * 21 20 19 23 23 F 1.35102 * 124.54270 * 179.97438 * 22 21 20 24 24 S 1.70619 * 110.91633 * 0.02562 * 22 21 20 25 25 C 1.53180 * 115.08172 * 55.44310 * 12 11 10 26 26 C 1.46842 * 120.38665 * 28.88910 * 9 7 2 27 27 H 0.97002 * 120.00258 * 359.97438 * 1 2 3 28 28 H 1.09002 * 109.57331 * 117.08472 * 10 9 7 29 29 H 1.09002 * 109.57960 * 356.68994 * 10 9 7 30 30 H 1.08988 * 109.59123 * 188.89856 * 11 10 9 31 31 H 1.09008 * 109.58455 * 68.46817 * 11 10 9 32 32 H 1.09003 * 117.51914 * 144.82892 * 13 12 11 33 33 H 1.09002 * 117.52635 * 359.75933 * 13 12 11 34 34 H 0.97000 * 120.00009 * 335.10595 * 16 14 12 35 35 H 1.08001 * 123.33724 * 359.71305 * 20 19 17 36 36 H 1.08002 * 122.47640 * 179.97438 * 21 20 19 37 37 H 1.09007 * 109.58743 * 64.34615 * 25 12 11 38 38 H 1.08998 * 109.59246 * 184.77172 * 25 12 11 39 39 H 1.08997 * 109.58149 * 242.92141 * 26 9 7 40 40 H 1.09005 * 109.57329 * 3.31892 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0512 -1.2248 0.2861 9 7 1.3749 -2.3594 -0.3645 10 6 1.8051 -3.6491 0.1906 11 6 2.1665 -4.5893 -0.9656 12 6 1.0056 -4.6105 -1.9649 13 6 -0.0888 -5.6586 -1.7592 14 6 0.9057 -5.8049 -2.9129 15 1 1.6661 -6.5811 -2.8266 16 7 0.4109 -5.5530 -4.2686 17 6 0.7512 -6.3823 -5.2751 18 8 1.4693 -7.3409 -5.0575 19 6 0.2575 -6.1304 -6.6294 20 6 0.5314 -6.8965 -7.7284 21 6 -0.0622 -6.4323 -8.8767 22 6 -0.7992 -5.3209 -8.7260 23 9 -1.4647 -4.7018 -9.7255 24 16 -0.7819 -4.7938 -7.1034 25 6 0.5852 -3.2385 -2.5009 26 6 0.2554 -2.3250 -1.3141 27 1 -0.4850 0.8400 0.0004 28 1 0.9943 -4.0837 0.7752 29 1 2.6776 -3.5002 0.8268 30 1 2.3351 -5.5947 -0.5800 31 1 3.0685 -4.2296 -1.4609 32 1 -1.1113 -5.3748 -2.0088 33 1 0.0172 -6.3384 -0.9138 34 1 -0.1615 -4.7894 -4.4420 35 1 1.1562 -7.7768 -7.6974 36 1 0.0562 -6.9248 -9.8305 37 1 1.4019 -2.8060 -3.0790 38 1 -0.2954 -3.3476 -3.1339 39 1 -0.6514 -2.6776 -0.8227 40 1 0.1081 -1.3047 -1.6683 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016997911.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:17 Heat of formation + Delta-G solvation = -13.024091 kcal Electronic energy + Delta-G solvation = -24535.745256 eV Core-core repulsion = 20778.526800 eV Total energy + Delta-G solvation = -3757.218457 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.105 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.22364 -41.25876 -39.91564 -38.44304 -37.10000 -34.66209 -33.31606 -31.74708 -30.67587 -29.74629 -26.32627 -26.12910 -24.10729 -23.79452 -22.84572 -21.85302 -20.94334 -20.16527 -19.77295 -18.41448 -17.87577 -17.68089 -17.12762 -16.86133 -16.68646 -16.08278 -15.82980 -15.60502 -15.48207 -15.34847 -14.99960 -14.71979 -14.29086 -14.11877 -13.77784 -13.56634 -13.31159 -13.18478 -13.04485 -12.92206 -12.57355 -12.54210 -12.33207 -12.13836 -12.00681 -11.76747 -11.40819 -11.38547 -11.23086 -10.70597 -10.47550 -10.01038 -9.86947 -9.67013 -8.60620 -7.85157 -5.30752 -0.83606 -0.15134 0.46541 1.08449 1.47911 1.49796 1.56581 1.88111 1.95917 2.52870 2.93552 3.17154 3.29482 3.57317 3.64655 3.79980 3.85724 3.97776 4.11369 4.12775 4.23589 4.53882 4.59366 4.71182 4.71954 4.83101 4.85670 4.90445 4.95423 5.02038 5.08292 5.10287 5.23053 5.30395 5.37131 5.41223 5.54905 5.67041 5.79305 6.28867 6.42663 6.95196 7.18318 7.90549 8.41201 9.19662 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.015521 B = 0.003048 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.530445 B = 9185.402404 C =10447.890780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.047 4.047 3 Si 0.963 3.037 4 H -0.280 1.280 5 H -0.293 1.293 6 H -0.277 1.277 7 C -0.265 4.265 8 H 0.062 0.938 9 N -0.608 5.608 10 C 0.145 3.855 11 C -0.086 4.086 12 C -0.116 4.116 13 C -0.167 4.167 14 C 0.085 3.915 15 H 0.134 0.866 16 N -0.687 5.687 17 C 0.596 3.404 18 O -0.561 6.561 19 C -0.284 4.284 20 C -0.026 4.026 21 C -0.175 4.175 22 C -0.029 4.029 23 F -0.102 7.102 24 S 0.249 5.751 25 C -0.092 4.092 26 C 0.181 3.819 27 H 0.250 0.750 28 H 0.019 0.981 29 H 0.052 0.948 30 H 0.084 0.916 31 H 0.054 0.946 32 H 0.100 0.900 33 H 0.115 0.885 34 H 0.406 0.594 35 H 0.174 0.826 36 H 0.185 0.815 37 H 0.051 0.949 38 H 0.068 0.932 39 H 0.000 1.000 40 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.591 -13.840 -16.550 21.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.243 4.243 3 Si 0.791 3.209 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.203 1.203 7 C -0.395 4.395 8 H 0.080 0.920 9 N -0.332 5.332 10 C 0.020 3.980 11 C -0.125 4.125 12 C -0.118 4.118 13 C -0.206 4.206 14 C -0.021 4.021 15 H 0.152 0.848 16 N -0.336 5.336 17 C 0.384 3.616 18 O -0.442 6.442 19 C -0.405 4.405 20 C -0.059 4.059 21 C -0.207 4.207 22 C -0.167 4.167 23 F -0.081 7.081 24 S 0.515 5.485 25 C -0.131 4.131 26 C 0.055 3.945 27 H 0.059 0.941 28 H 0.037 0.963 29 H 0.070 0.930 30 H 0.102 0.898 31 H 0.073 0.927 32 H 0.119 0.881 33 H 0.133 0.867 34 H 0.242 0.758 35 H 0.192 0.808 36 H 0.202 0.798 37 H 0.069 0.931 38 H 0.086 0.914 39 H 0.018 0.982 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.894 -13.114 -15.656 20.627 hybrid contribution 0.389 0.551 -0.873 1.103 sum -2.505 -12.564 -16.529 20.912 Atomic orbital electron populations 1.70161 1.06524 1.25875 1.55113 1.25733 0.95980 1.01284 1.01259 0.85420 0.77678 0.79569 0.78247 1.20582 1.21934 1.20305 1.19459 0.93049 0.86409 1.40628 0.92002 1.44232 1.37977 1.02278 1.48675 1.20993 0.97120 0.85981 0.93913 1.21527 0.95698 0.99796 0.95524 1.21854 0.99456 0.90730 0.99743 1.23658 0.95691 1.01517 0.99707 1.21786 1.01221 1.00913 0.78186 0.84791 1.45264 1.51452 1.29374 1.07539 1.16970 0.79506 0.81969 0.83152 1.90817 1.38834 1.30591 1.83962 1.24384 1.12794 1.05154 0.98150 1.20702 0.96971 0.99486 0.88771 1.20515 1.00592 0.96958 1.02679 1.22158 1.03289 0.99392 0.91865 1.91546 1.77977 1.81199 1.57338 1.83555 1.44003 1.24112 0.96863 1.21568 0.99759 0.93756 0.98013 1.20538 0.88030 0.97718 0.88235 0.94091 0.96336 0.92963 0.89754 0.92706 0.88138 0.86710 0.75756 0.80845 0.79807 0.93068 0.91364 0.98156 0.92627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.05 11.23 21.65 0.24 -53.81 16 2 C -0.05 -2.59 4.88 84.86 0.41 -2.17 16 3 Si 0.96 44.40 29.59 68.60 2.03 46.43 16 4 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 5 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 6 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 7 C -0.27 -14.46 9.54 84.04 0.80 -13.66 16 8 H 0.06 3.32 7.89 -2.91 -0.02 3.29 16 9 N -0.61 -29.92 2.94 -698.88 -2.05 -31.97 16 10 C 0.15 5.85 6.51 86.43 0.56 6.42 16 11 C -0.09 -2.77 5.83 30.77 0.18 -2.59 16 12 C -0.12 -3.52 1.94 -52.14 -0.10 -3.62 16 13 C -0.17 -4.23 9.87 30.58 0.30 -3.93 16 14 C 0.08 2.21 6.13 44.94 0.28 2.48 16 15 H 0.13 3.63 7.40 -2.38 -0.02 3.61 16 16 N -0.69 -16.58 5.34 -447.06 -2.39 -18.97 16 17 C 0.60 15.16 7.77 86.35 0.67 15.83 16 18 O -0.56 -17.65 16.40 -4.46 -0.07 -17.72 16 19 C -0.28 -5.66 6.44 24.03 0.15 -5.50 16 20 C -0.03 -0.43 10.00 21.71 0.22 -0.21 16 21 C -0.18 -2.39 10.16 21.14 0.21 -2.18 16 22 C -0.03 -0.47 8.10 66.90 0.54 0.07 16 23 F -0.10 -1.78 17.32 44.97 0.78 -1.00 16 24 S 0.25 4.08 22.15 -56.49 -1.25 2.83 16 25 C -0.09 -3.21 5.37 30.77 0.17 -3.04 16 26 C 0.18 8.34 5.40 86.43 0.47 8.81 16 27 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 28 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.05 2.09 7.92 -2.39 -0.02 2.07 16 30 H 0.08 2.20 8.10 -2.39 -0.02 2.19 16 31 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 32 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 33 H 0.11 2.60 8.14 -2.39 -0.02 2.58 16 34 H 0.41 8.66 6.22 -92.71 -0.58 8.08 16 35 H 0.17 2.48 8.06 -2.91 -0.02 2.46 16 36 H 0.18 1.52 8.06 -2.91 -0.02 1.49 16 37 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 38 H 0.07 1.99 6.75 -2.39 -0.02 1.97 16 39 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 40 H 0.06 2.94 5.93 -2.38 -0.01 2.93 16 Total: -1.00 -65.74 347.75 2.66 -63.08 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: 0.50 Total: 14.41 kcal Atomic # 6 Polarization: -8.16 SS G_CDS: 4.87 Total: -3.29 kcal Atomic # 7 Polarization: -100.55 SS G_CDS: -4.20 Total: -104.75 kcal Atomic # 8 Polarization: -17.65 SS G_CDS: -0.07 Total: -17.72 kcal Atomic # 9 Polarization: -1.78 SS G_CDS: 0.78 Total: -1.00 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Atomic # 16 Polarization: 4.08 SS G_CDS: -1.25 Total: 2.83 kcal Total: -65.74 2.66 -63.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016997911.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.061 kcal (2) G-P(sol) polarization free energy of solvation -65.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds