Wall clock time and date at job start Tue Mar 31 2020 13:32:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 120.00430 * 2 1 4 4 H 1.48498 * 109.47005 * 274.24575 * 3 2 1 5 5 H 1.48501 * 109.47069 * 34.24351 * 3 2 1 6 6 H 1.48497 * 109.47293 * 154.24615 * 3 2 1 7 7 C 1.38814 * 120.00157 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99778 * 339.30642 * 7 2 1 9 9 N 1.36936 * 120.00463 * 159.29843 * 7 2 1 10 10 C 1.46850 * 120.38128 * 331.83006 * 9 7 2 11 11 C 1.53352 * 108.81003 * 236.87643 * 10 9 7 12 12 C 1.53186 * 108.77063 * 308.68956 * 11 10 9 13 13 C 1.52847 * 117.65293 * 269.97255 * 12 11 10 14 14 C 1.52815 * 117.71127 * 201.11859 * 12 11 10 15 15 H 1.09000 * 117.52101 * 215.08185 * 14 12 11 16 16 N 1.46495 * 117.50395 * 0.12956 * 14 12 11 17 17 C 1.34778 * 120.00176 * 204.97654 * 16 14 12 18 18 O 1.21733 * 119.99935 * 0.02562 * 17 16 14 19 19 C 1.46334 * 120.00107 * 180.02562 * 17 16 14 20 20 C 1.36738 * 125.43738 * 179.97438 * 19 17 16 21 21 C 1.37349 * 113.33068 * 180.02562 * 20 19 17 22 22 C 1.34206 * 115.04647 * 359.97438 * 21 20 19 23 23 F 1.35101 * 124.53768 * 179.97438 * 22 21 20 24 24 S 1.70611 * 110.91999 * 0.02562 * 22 21 20 25 25 C 1.53179 * 115.07704 * 55.44000 * 12 11 10 26 26 C 1.46842 * 120.38243 * 151.79866 * 9 7 2 27 27 H 0.96998 * 119.99336 * 0.02562 * 1 2 3 28 28 H 1.09003 * 109.57828 * 117.08016 * 10 9 7 29 29 H 1.08998 * 109.57778 * 356.67589 * 10 9 7 30 30 H 1.08991 * 109.59067 * 188.89784 * 11 10 9 31 31 H 1.09001 * 109.58291 * 68.46531 * 11 10 9 32 32 H 1.08995 * 117.50514 * 144.80921 * 13 12 11 33 33 H 1.08998 * 117.52770 * 359.75392 * 13 12 11 34 34 H 0.97001 * 119.99868 * 24.98436 * 16 14 12 35 35 H 1.07993 * 123.33542 * 0.02562 * 20 19 17 36 36 H 1.08002 * 122.47445 * 179.97438 * 21 20 19 37 37 H 1.09004 * 109.58589 * 64.35218 * 25 12 11 38 38 H 1.09008 * 109.58867 * 184.77922 * 25 12 11 39 39 H 1.08998 * 109.58347 * 242.92683 * 26 9 7 40 40 H 1.08994 * 109.58224 * 3.33057 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4081 2.0982 -1.3962 5 1 1.4956 2.6251 0.7878 6 1 3.5898 1.4158 0.6083 7 6 2.0103 -1.2021 0.0005 8 1 1.5225 -2.1072 0.3315 9 7 3.3133 -1.2407 -0.4186 10 6 3.8058 -0.2689 -1.4033 11 6 4.3786 -1.0298 -2.6052 12 6 5.3750 -2.0763 -2.0968 13 6 6.8377 -1.6548 -1.9586 14 6 6.4166 -2.6038 -3.0828 15 1 6.7093 -3.6500 -2.9943 16 7 6.3899 -2.0682 -4.4460 17 6 6.8911 -2.7939 -5.4652 18 8 7.3655 -3.8947 -5.2529 19 6 6.8650 -2.2585 -6.8268 20 6 7.3412 -2.8963 -7.9387 21 6 7.1910 -2.1649 -9.0915 22 6 6.6099 -0.9657 -8.9319 23 9 6.3695 -0.0916 -9.9336 24 16 6.2167 -0.6924 -7.2943 25 6 4.8160 -3.0549 -1.0594 26 6 4.2345 -2.2538 0.1118 27 1 -0.4849 0.8401 -0.0004 28 1 4.5868 0.3437 -0.9528 29 1 2.9837 0.3671 -1.7315 30 1 4.8883 -0.3326 -3.2700 31 1 3.5702 -1.5258 -3.1426 32 1 7.4071 -2.0767 -1.1304 33 1 7.0954 -0.6320 -2.2334 34 1 6.0117 -1.1911 -4.6152 35 1 7.7908 -3.8778 -7.9130 36 1 7.5164 -2.5280 -10.0552 37 1 4.0314 -3.6601 -1.5136 38 1 5.6161 -3.7013 -0.6984 39 1 5.0420 -1.7642 0.6561 40 1 3.6945 -2.9241 0.7804 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016997912.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:22 Heat of formation + Delta-G solvation = 10.234883 kcal Electronic energy + Delta-G solvation = -24633.925523 eV Core-core repulsion = 20877.715652 eV Total energy + Delta-G solvation = -3756.209872 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.105 amu Computer time = 1.79 seconds Orbital eigenvalues (eV) -49.53585 -40.27516 -38.90202 -37.66212 -35.78976 -33.40345 -31.76203 -30.60218 -29.86252 -28.63292 -25.50646 -24.22325 -23.18209 -22.89133 -21.57365 -20.70524 -20.21110 -19.38594 -18.43511 -17.20665 -16.92535 -16.55258 -16.43939 -15.84710 -15.32422 -15.11781 -14.93176 -14.59904 -14.25430 -14.09348 -13.83470 -13.57465 -13.06129 -12.87815 -12.74715 -12.52030 -12.46365 -12.06563 -12.00806 -11.77332 -11.49215 -11.30307 -10.82401 -10.63452 -10.44444 -10.31558 -10.05224 -9.82682 -9.59301 -9.48109 -9.26480 -9.20642 -8.81222 -8.52425 -6.97301 -5.97351 -3.33228 -0.12249 0.51377 1.14050 1.77489 2.79074 2.84116 3.27656 3.45845 3.48646 3.82589 3.96835 4.41192 4.50016 4.72965 4.77809 4.83371 4.86377 4.91707 5.07638 5.26106 5.31941 5.38555 5.48492 5.67002 5.70993 5.81031 5.86148 5.88057 6.00519 6.11570 6.27129 6.29733 6.34649 6.39380 6.57047 6.64780 6.66561 6.92001 7.20485 7.88567 7.95701 8.31592 8.93135 9.70158 10.08103 11.18695 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.016036 B = 0.003230 C = 0.002840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.623714 B = 8667.765082 C = 9857.940000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.023 3.977 3 Si 0.882 3.118 4 H -0.289 1.289 5 H -0.303 1.303 6 H -0.270 1.270 7 C -0.261 4.261 8 H 0.085 0.915 9 N -0.604 5.604 10 C 0.132 3.868 11 C -0.100 4.100 12 C -0.100 4.100 13 C -0.182 4.182 14 C 0.074 3.926 15 H 0.138 0.862 16 N -0.691 5.691 17 C 0.596 3.404 18 O -0.526 6.526 19 C -0.260 4.260 20 C -0.035 4.035 21 C -0.182 4.182 22 C -0.021 4.021 23 F -0.098 7.098 24 S 0.229 5.771 25 C -0.099 4.099 26 C 0.152 3.848 27 H 0.262 0.738 28 H 0.027 0.973 29 H 0.072 0.928 30 H 0.046 0.954 31 H 0.073 0.927 32 H 0.102 0.898 33 H 0.093 0.907 34 H 0.399 0.601 35 H 0.166 0.834 36 H 0.159 0.841 37 H 0.069 0.931 38 H 0.058 0.942 39 H 0.024 0.976 40 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.462 -2.445 -15.694 22.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.176 4.176 3 Si 0.712 3.288 4 H -0.217 1.217 5 H -0.232 1.232 6 H -0.195 1.195 7 C -0.389 4.389 8 H 0.103 0.897 9 N -0.327 5.327 10 C 0.007 3.993 11 C -0.140 4.140 12 C -0.102 4.102 13 C -0.221 4.221 14 C -0.031 4.031 15 H 0.156 0.844 16 N -0.340 5.340 17 C 0.382 3.618 18 O -0.404 6.404 19 C -0.381 4.381 20 C -0.067 4.067 21 C -0.215 4.215 22 C -0.159 4.159 23 F -0.077 7.077 24 S 0.494 5.506 25 C -0.138 4.138 26 C 0.026 3.974 27 H 0.072 0.928 28 H 0.044 0.956 29 H 0.090 0.910 30 H 0.065 0.935 31 H 0.091 0.909 32 H 0.120 0.880 33 H 0.112 0.888 34 H 0.234 0.766 35 H 0.183 0.817 36 H 0.177 0.823 37 H 0.088 0.912 38 H 0.077 0.923 39 H 0.042 0.958 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 15.932 -1.901 -14.778 21.814 hybrid contribution 0.853 0.630 -1.348 1.715 sum 16.785 -1.271 -16.127 23.311 Atomic orbital electron populations 1.69842 1.05759 1.26537 1.52918 1.25305 0.95213 0.97567 0.99481 0.86949 0.80222 0.84754 0.76859 1.21739 1.23163 1.19478 1.18945 0.85125 0.94736 1.40101 0.89725 1.44277 1.08608 1.34617 1.45201 1.21275 0.97236 0.91997 0.88838 1.21659 0.97267 0.96196 0.98834 1.21956 0.90100 0.99687 0.98430 1.23590 0.98342 0.99951 1.00206 1.21908 1.05693 0.98122 0.77418 0.84432 1.45279 1.61145 1.20758 1.06826 1.16695 0.78019 0.84694 0.82433 1.90845 1.46015 1.19634 1.83876 1.24545 1.14696 1.00184 0.98634 1.20496 0.96487 1.00846 0.88862 1.20313 1.05369 0.93846 1.01980 1.21976 1.08891 0.93357 0.91656 1.91552 1.92415 1.66652 1.57067 1.83606 1.56076 1.14957 0.95977 1.21691 0.99640 0.96278 0.96185 1.20884 0.92467 0.91058 0.92960 0.92774 0.95552 0.90951 0.93495 0.90871 0.87954 0.88824 0.76565 0.81706 0.82297 0.91249 0.92292 0.95763 0.91624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.46 13.97 55.49 0.78 -26.69 16 2 C 0.02 0.66 5.23 -17.43 -0.09 0.57 16 3 Si 0.88 21.86 24.40 -169.99 -4.15 17.71 16 4 H -0.29 -6.87 6.66 56.52 0.38 -6.49 16 5 H -0.30 -7.71 7.11 56.52 0.40 -7.31 16 6 H -0.27 -6.56 6.65 56.52 0.38 -6.19 16 7 C -0.26 -7.12 10.00 -15.06 -0.15 -7.27 16 8 H 0.09 2.48 8.06 -52.48 -0.42 2.05 16 9 N -0.60 -13.82 2.71 -172.25 -0.47 -14.29 16 10 C 0.13 2.74 4.23 -3.67 -0.02 2.73 16 11 C -0.10 -1.65 5.37 -26.45 -0.14 -1.79 16 12 C -0.10 -1.47 1.94 -154.49 -0.30 -1.77 16 13 C -0.18 -2.27 9.86 -26.80 -0.26 -2.54 16 14 C 0.07 0.96 6.14 -68.01 -0.42 0.54 16 15 H 0.14 1.87 7.40 -51.93 -0.38 1.49 16 16 N -0.69 -8.33 5.34 -55.30 -0.30 -8.62 16 17 C 0.60 7.60 7.77 -13.00 -0.10 7.50 16 18 O -0.53 -8.23 16.40 5.16 0.08 -8.15 16 19 C -0.26 -2.67 6.44 -36.87 -0.24 -2.91 16 20 C -0.03 -0.31 10.00 -40.45 -0.40 -0.71 16 21 C -0.18 -1.43 10.16 -41.33 -0.42 -1.85 16 22 C -0.02 -0.18 8.10 29.31 0.24 0.05 16 23 F -0.10 -0.92 17.32 2.25 0.04 -0.88 16 24 S 0.23 1.97 22.15 -107.50 -2.38 -0.41 16 25 C -0.10 -1.53 5.83 -26.46 -0.15 -1.69 16 26 C 0.15 2.86 6.52 -3.67 -0.02 2.84 16 27 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 28 H 0.03 0.54 7.27 -51.93 -0.38 0.16 16 29 H 0.07 1.66 4.32 -51.93 -0.22 1.44 16 30 H 0.05 0.64 6.75 -51.93 -0.35 0.29 16 31 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 32 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.40 4.24 6.22 -40.82 -0.25 3.98 16 35 H 0.17 1.29 8.06 -52.49 -0.42 0.87 16 36 H 0.16 0.88 8.06 -52.49 -0.42 0.46 16 37 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.06 0.77 8.10 -51.92 -0.42 0.35 16 39 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.07 1.23 7.92 -51.93 -0.41 0.82 16 LS Contribution 341.46 15.07 5.15 5.15 Total: -1.00 -31.59 341.46 -8.72 -40.31 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: -4.99 Total: 2.17 kcal Atomic # 6 Polarization: -3.81 SS G_CDS: -2.48 Total: -6.29 kcal Atomic # 7 Polarization: -49.62 SS G_CDS: 0.01 Total: -49.60 kcal Atomic # 8 Polarization: -8.23 SS G_CDS: 0.08 Total: -8.15 kcal Atomic # 9 Polarization: -0.92 SS G_CDS: 0.04 Total: -0.88 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.15 Total: 17.71 kcal Atomic # 16 Polarization: 1.97 SS G_CDS: -2.38 Total: -0.41 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.59 -8.72 -40.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016997912.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.545 kcal (2) G-P(sol) polarization free energy of solvation -31.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.79 seconds