Wall clock time and date at job start Tue Mar 31 2020 13:32:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 120.00430 * 2 1 4 4 H 1.48498 * 109.47005 * 274.24575 * 3 2 1 5 5 H 1.48501 * 109.47069 * 34.24351 * 3 2 1 6 6 H 1.48497 * 109.47293 * 154.24615 * 3 2 1 7 7 C 1.38814 * 120.00157 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99778 * 339.30642 * 7 2 1 9 9 N 1.36936 * 120.00463 * 159.29843 * 7 2 1 10 10 C 1.46850 * 120.38128 * 331.83006 * 9 7 2 11 11 C 1.53352 * 108.81003 * 236.87643 * 10 9 7 12 12 C 1.53186 * 108.77063 * 308.68956 * 11 10 9 13 13 C 1.52847 * 117.65293 * 269.97255 * 12 11 10 14 14 C 1.52815 * 117.71127 * 201.11859 * 12 11 10 15 15 H 1.09000 * 117.52101 * 215.08185 * 14 12 11 16 16 N 1.46495 * 117.50395 * 0.12956 * 14 12 11 17 17 C 1.34778 * 120.00176 * 204.97654 * 16 14 12 18 18 O 1.21733 * 119.99935 * 0.02562 * 17 16 14 19 19 C 1.46334 * 120.00107 * 180.02562 * 17 16 14 20 20 C 1.36738 * 125.43738 * 179.97438 * 19 17 16 21 21 C 1.37349 * 113.33068 * 180.02562 * 20 19 17 22 22 C 1.34206 * 115.04647 * 359.97438 * 21 20 19 23 23 F 1.35101 * 124.53768 * 179.97438 * 22 21 20 24 24 S 1.70611 * 110.91999 * 0.02562 * 22 21 20 25 25 C 1.53179 * 115.07704 * 55.44000 * 12 11 10 26 26 C 1.46842 * 120.38243 * 151.79866 * 9 7 2 27 27 H 0.96998 * 119.99336 * 0.02562 * 1 2 3 28 28 H 1.09003 * 109.57828 * 117.08016 * 10 9 7 29 29 H 1.08998 * 109.57778 * 356.67589 * 10 9 7 30 30 H 1.08991 * 109.59067 * 188.89784 * 11 10 9 31 31 H 1.09001 * 109.58291 * 68.46531 * 11 10 9 32 32 H 1.08995 * 117.50514 * 144.80921 * 13 12 11 33 33 H 1.08998 * 117.52770 * 359.75392 * 13 12 11 34 34 H 0.97001 * 119.99868 * 24.98436 * 16 14 12 35 35 H 1.07993 * 123.33542 * 0.02562 * 20 19 17 36 36 H 1.08002 * 122.47445 * 179.97438 * 21 20 19 37 37 H 1.09004 * 109.58589 * 64.35218 * 25 12 11 38 38 H 1.09008 * 109.58867 * 184.77922 * 25 12 11 39 39 H 1.08998 * 109.58347 * 242.92683 * 26 9 7 40 40 H 1.08994 * 109.58224 * 3.33057 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4081 2.0982 -1.3962 5 1 1.4956 2.6251 0.7878 6 1 3.5898 1.4158 0.6083 7 6 2.0103 -1.2021 0.0005 8 1 1.5225 -2.1072 0.3315 9 7 3.3133 -1.2407 -0.4186 10 6 3.8058 -0.2689 -1.4033 11 6 4.3786 -1.0298 -2.6052 12 6 5.3750 -2.0763 -2.0968 13 6 6.8377 -1.6548 -1.9586 14 6 6.4166 -2.6038 -3.0828 15 1 6.7093 -3.6500 -2.9943 16 7 6.3899 -2.0682 -4.4460 17 6 6.8911 -2.7939 -5.4652 18 8 7.3655 -3.8947 -5.2529 19 6 6.8650 -2.2585 -6.8268 20 6 7.3412 -2.8963 -7.9387 21 6 7.1910 -2.1649 -9.0915 22 6 6.6099 -0.9657 -8.9319 23 9 6.3695 -0.0916 -9.9336 24 16 6.2167 -0.6924 -7.2943 25 6 4.8160 -3.0549 -1.0594 26 6 4.2345 -2.2538 0.1118 27 1 -0.4849 0.8401 -0.0004 28 1 4.5868 0.3437 -0.9528 29 1 2.9837 0.3671 -1.7315 30 1 4.8883 -0.3326 -3.2700 31 1 3.5702 -1.5258 -3.1426 32 1 7.4071 -2.0767 -1.1304 33 1 7.0954 -0.6320 -2.2334 34 1 6.0117 -1.1911 -4.6152 35 1 7.7908 -3.8778 -7.9130 36 1 7.5164 -2.5280 -10.0552 37 1 4.0314 -3.6601 -1.5136 38 1 5.6161 -3.7013 -0.6984 39 1 5.0420 -1.7642 0.6561 40 1 3.6945 -2.9241 0.7804 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016997912.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:21 Heat of formation + Delta-G solvation = -9.709930 kcal Electronic energy + Delta-G solvation = -24634.790395 eV Core-core repulsion = 20877.715652 eV Total energy + Delta-G solvation = -3757.074744 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.105 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.23255 -41.29981 -40.02083 -38.47780 -37.27053 -34.67859 -33.60089 -32.05575 -30.82141 -29.98133 -26.28717 -25.98392 -24.57413 -23.80507 -22.98696 -21.87463 -20.97821 -20.22328 -19.84570 -18.50143 -17.92269 -17.72078 -17.19737 -17.13307 -16.72079 -16.09049 -15.92531 -15.66645 -15.55569 -15.40933 -15.30500 -14.55654 -14.43478 -14.24740 -14.13076 -13.68294 -13.52631 -13.47165 -13.18795 -12.99080 -12.65327 -12.41978 -12.26275 -12.16130 -12.08926 -11.60885 -11.53117 -11.39943 -11.27020 -10.80694 -10.63512 -10.01823 -9.87333 -9.68673 -8.84845 -8.14895 -5.46418 -0.84576 -0.16105 0.45145 1.07545 1.30431 1.43484 1.52857 1.86520 1.95341 2.43342 2.89833 3.08468 3.16516 3.37165 3.58099 3.68715 3.79167 3.90375 4.01393 4.10489 4.22651 4.38334 4.49474 4.59624 4.69669 4.70607 4.78873 4.82696 4.88438 4.93987 4.95460 4.97772 5.09255 5.14043 5.22179 5.30781 5.38691 5.52738 5.90074 6.15206 6.27593 6.94722 6.96081 7.66261 8.06046 9.05315 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.016036 B = 0.003230 C = 0.002840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.623714 B = 8667.765082 C = 9857.940000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.960 5.960 2 C -0.038 4.038 3 Si 0.949 3.051 4 H -0.272 1.272 5 H -0.314 1.314 6 H -0.258 1.258 7 C -0.249 4.249 8 H 0.047 0.953 9 N -0.619 5.619 10 C 0.127 3.873 11 C -0.091 4.091 12 C -0.121 4.121 13 C -0.162 4.162 14 C 0.083 3.917 15 H 0.134 0.866 16 N -0.688 5.688 17 C 0.597 3.403 18 O -0.561 6.561 19 C -0.284 4.284 20 C -0.027 4.027 21 C -0.176 4.176 22 C -0.029 4.029 23 F -0.102 7.102 24 S 0.252 5.748 25 C -0.089 4.089 26 C 0.147 3.853 27 H 0.261 0.739 28 H 0.040 0.960 29 H 0.047 0.953 30 H 0.080 0.920 31 H 0.053 0.947 32 H 0.119 0.881 33 H 0.107 0.893 34 H 0.406 0.594 35 H 0.173 0.827 36 H 0.184 0.816 37 H 0.049 0.951 38 H 0.090 0.910 39 H 0.041 0.959 40 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.560 -1.663 -17.151 26.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.606 5.606 2 C -0.232 4.232 3 Si 0.778 3.222 4 H -0.199 1.199 5 H -0.243 1.243 6 H -0.182 1.182 7 C -0.379 4.379 8 H 0.065 0.935 9 N -0.343 5.343 10 C 0.002 3.998 11 C -0.130 4.130 12 C -0.122 4.122 13 C -0.200 4.200 14 C -0.022 4.022 15 H 0.151 0.849 16 N -0.337 5.337 17 C 0.384 3.616 18 O -0.441 6.441 19 C -0.405 4.405 20 C -0.060 4.060 21 C -0.208 4.208 22 C -0.168 4.168 23 F -0.081 7.081 24 S 0.517 5.483 25 C -0.128 4.128 26 C 0.023 3.977 27 H 0.070 0.930 28 H 0.057 0.943 29 H 0.065 0.935 30 H 0.098 0.902 31 H 0.072 0.928 32 H 0.137 0.863 33 H 0.125 0.875 34 H 0.243 0.757 35 H 0.191 0.809 36 H 0.201 0.799 37 H 0.068 0.932 38 H 0.108 0.892 39 H 0.059 0.941 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 19.074 -1.109 -16.251 25.083 hybrid contribution -0.111 0.280 -0.941 0.988 sum 18.964 -0.830 -17.193 25.611 Atomic orbital electron populations 1.69984 1.07584 1.27197 1.55808 1.25957 0.95825 1.01135 1.00280 0.85855 0.78913 0.79923 0.77529 1.19861 1.24335 1.18182 1.18877 0.87092 0.93392 1.38551 0.93485 1.44415 1.07645 1.35983 1.46298 1.21330 0.96683 0.91900 0.89915 1.21484 0.97447 0.96807 0.97302 1.21806 0.91006 0.99806 0.99597 1.23705 0.95741 1.00573 0.99961 1.21786 1.04135 0.98401 0.77909 0.84872 1.45246 1.60977 1.20982 1.06495 1.16955 0.77206 0.84176 0.83232 1.90824 1.47651 1.21092 1.84562 1.24394 1.16625 1.01616 0.97838 1.20699 0.95477 1.01110 0.88725 1.20517 1.04437 0.93169 1.02687 1.22161 1.09164 0.93720 0.91711 1.91547 1.92484 1.66829 1.57232 1.83468 1.55512 1.13576 0.95750 1.21533 0.99916 0.96213 0.95119 1.21052 0.92006 0.90381 0.94294 0.93030 0.94252 0.93458 0.90197 0.92792 0.86298 0.87494 0.75698 0.80919 0.79906 0.93202 0.89192 0.94091 0.92839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.27 13.97 21.65 0.30 -59.97 16 2 C -0.04 -2.18 5.23 84.86 0.44 -1.73 16 3 Si 0.95 45.57 24.40 68.60 1.67 47.24 16 4 H -0.27 -12.15 6.66 99.48 0.66 -11.49 16 5 H -0.31 -15.51 7.11 99.48 0.71 -14.80 16 6 H -0.26 -11.70 6.65 99.48 0.66 -11.03 16 7 C -0.25 -14.04 10.00 84.03 0.84 -13.20 16 8 H 0.05 2.93 8.06 -2.91 -0.02 2.90 16 9 N -0.62 -28.17 2.71 -698.88 -1.89 -30.06 16 10 C 0.13 5.02 4.23 86.43 0.37 5.39 16 11 C -0.09 -2.80 5.37 30.77 0.17 -2.64 16 12 C -0.12 -3.21 1.94 -52.17 -0.10 -3.31 16 13 C -0.16 -3.35 9.86 30.55 0.30 -3.04 16 14 C 0.08 1.93 6.14 44.94 0.28 2.20 16 15 H 0.13 3.29 7.40 -2.39 -0.02 3.28 16 16 N -0.69 -14.87 5.34 -447.08 -2.39 -17.26 16 17 C 0.60 14.16 7.77 86.35 0.67 14.83 16 18 O -0.56 -16.84 16.40 -4.45 -0.07 -16.91 16 19 C -0.28 -5.28 6.44 24.03 0.15 -5.12 16 20 C -0.03 -0.42 10.00 21.71 0.22 -0.20 16 21 C -0.18 -2.28 10.16 21.14 0.21 -2.06 16 22 C -0.03 -0.45 8.10 66.90 0.54 0.09 16 23 F -0.10 -1.71 17.32 44.97 0.78 -0.93 16 24 S 0.25 3.76 22.15 -56.49 -1.25 2.51 16 25 C -0.09 -2.61 5.83 30.77 0.18 -2.43 16 26 C 0.15 5.39 6.52 86.43 0.56 5.95 16 27 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 28 H 0.04 1.47 7.27 -2.39 -0.02 1.46 16 29 H 0.05 2.11 4.32 -2.39 -0.01 2.10 16 30 H 0.08 1.90 6.75 -2.39 -0.02 1.89 16 31 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.12 2.13 8.14 -2.39 -0.02 2.11 16 33 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.41 7.45 6.22 -92.71 -0.58 6.87 16 35 H 0.17 2.35 8.06 -2.91 -0.02 2.33 16 36 H 0.18 1.42 8.06 -2.91 -0.02 1.40 16 37 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.09 2.09 8.10 -2.38 -0.02 2.07 16 39 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.05 2.03 7.92 -2.39 -0.02 2.01 16 Total: -1.00 -70.40 341.46 2.40 -67.99 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: 0.42 Total: 12.67 kcal Atomic # 6 Polarization: -10.12 SS G_CDS: 4.83 Total: -5.28 kcal Atomic # 7 Polarization: -103.31 SS G_CDS: -3.98 Total: -107.29 kcal Atomic # 8 Polarization: -16.84 SS G_CDS: -0.07 Total: -16.91 kcal Atomic # 9 Polarization: -1.71 SS G_CDS: 0.78 Total: -0.93 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 1.67 Total: 47.24 kcal Atomic # 16 Polarization: 3.76 SS G_CDS: -1.25 Total: 2.51 kcal Total: -70.40 2.40 -67.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016997912.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.283 kcal (2) G-P(sol) polarization free energy of solvation -70.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds