Wall clock time and date at job start Tue Mar 31 2020 13:34:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 119.99942 * 2 1 4 4 H 1.48503 * 109.46890 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47288 * 300.00478 * 3 2 1 6 6 H 1.48495 * 109.47078 * 60.00691 * 3 2 1 7 7 C 1.38810 * 120.00140 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00052 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99757 * 359.97438 * 7 2 1 10 10 C 1.46500 * 119.99729 * 180.02562 * 9 7 2 11 11 H 1.08997 * 110.91753 * 37.45235 * 10 9 7 12 12 C 1.55159 * 111.00599 * 161.35219 * 10 9 7 13 13 C 1.54329 * 103.02245 * 153.37817 * 12 10 9 14 14 N 1.47019 * 107.26632 * 338.14378 * 13 12 10 15 15 C 1.34784 * 125.64840 * 178.84700 * 14 13 12 16 16 O 1.21601 * 120.00065 * 179.69278 * 15 14 13 17 17 C 1.47382 * 119.99879 * 359.68957 * 15 14 13 18 18 C 1.41392 * 126.42011 * 89.68514 * 17 15 14 19 19 Cl 1.73606 * 126.00553 * 0.02562 * 18 17 15 20 20 N 1.30535 * 107.98979 * 179.88099 * 18 17 15 21 21 N 1.39927 * 108.89272 * 0.38262 * 20 18 17 22 22 H 0.96996 * 125.73975 * 179.71357 * 21 20 18 23 23 C 1.34233 * 108.52271 * 359.75483 * 21 20 18 24 24 C 1.50706 * 126.27712 * 179.97438 * 23 21 20 25 25 C 1.52998 * 117.50154 * 8.62512 * 24 23 21 26 26 C 1.52995 * 117.49912 * 299.99957 * 24 23 21 27 27 C 1.47426 * 108.70490 * 358.58408 * 14 13 12 28 28 H 0.96995 * 120.00080 * 359.97438 * 1 2 3 29 29 H 0.96999 * 120.00015 * 0.02562 * 9 7 2 30 30 H 1.08997 * 110.72042 * 271.94053 * 12 10 9 31 31 H 1.09007 * 110.71750 * 35.21050 * 12 10 9 32 32 H 1.08995 * 109.99478 * 218.66408 * 13 12 10 33 33 H 1.09007 * 109.77876 * 97.49919 * 13 12 10 34 34 H 1.09001 * 115.54494 * 154.33165 * 24 23 21 35 35 H 1.08999 * 117.49794 * 359.97438 * 25 24 23 36 36 H 1.08993 * 117.49733 * 145.01844 * 25 24 23 37 37 H 1.09010 * 117.49641 * 214.98070 * 26 24 23 38 38 H 1.08993 * 117.50208 * 359.97438 * 26 24 23 39 39 H 1.09002 * 110.36613 * 143.19417 * 27 14 13 40 40 H 1.08998 * 110.36249 * 265.40947 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3966 -1.2125 6 1 1.8916 2.3963 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 1 2.9526 -3.5896 0.6186 12 6 1.1477 -4.8247 0.4626 13 6 1.7799 -6.0526 -0.2260 14 7 2.5593 -5.5580 -1.3703 15 6 3.2828 -6.3187 -2.2156 16 8 3.8862 -5.8003 -3.1352 17 6 3.3426 -7.7790 -2.0252 18 6 2.4609 -8.7347 -2.5804 19 17 1.1078 -8.3959 -3.6140 20 7 2.8448 -9.9169 -2.1818 21 7 3.9673 -9.7750 -1.3585 22 1 4.4481 -10.4982 -0.9264 23 6 4.2664 -8.4697 -1.2665 24 6 5.4020 -7.8684 -0.4790 25 6 6.4269 -8.8284 0.1282 26 6 5.4210 -8.1119 1.0314 27 6 2.4133 -4.0928 -1.4439 28 1 -0.4850 0.8400 0.0004 29 1 0.3556 -2.3880 -0.0005 30 1 1.1772 -4.9300 1.5471 31 1 0.1247 -4.6769 0.1162 32 1 0.9985 -6.7282 -0.5739 33 1 2.4362 -6.5705 0.4734 34 1 5.7650 -6.9054 -0.8381 35 1 6.2797 -9.8950 -0.0416 36 1 7.4645 -8.4972 0.1685 37 1 5.7970 -7.3092 1.6659 38 1 4.6121 -8.7066 1.4555 39 1 3.3502 -3.6336 -1.7593 40 1 1.6104 -3.8257 -2.1311 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001018956022.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:24 Heat of formation + Delta-G solvation = 79.074200 kcal Electronic energy + Delta-G solvation = -25125.270696 eV Core-core repulsion = 21389.922176 eV Total energy + Delta-G solvation = -3735.348520 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.109 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.90950 -39.38184 -37.65013 -37.13300 -36.89917 -34.10603 -31.94014 -31.47174 -30.66373 -29.55640 -27.52117 -24.79523 -23.89182 -22.98153 -22.81053 -21.86932 -21.38091 -20.09690 -19.03348 -17.94704 -17.23869 -16.61596 -16.34015 -15.80559 -15.50371 -15.41410 -14.98039 -14.51615 -14.18549 -13.89085 -13.40441 -13.15942 -12.84033 -12.79331 -12.47489 -12.37824 -12.11935 -12.08040 -11.86671 -11.50112 -11.35014 -11.20040 -11.07326 -10.86141 -10.83843 -10.71594 -10.29597 -10.01761 -9.87185 -9.73058 -9.67179 -9.01869 -8.93216 -8.30450 -7.07107 -5.83395 -3.14010 1.15946 1.21863 1.91688 2.52078 2.70138 3.26685 3.38332 3.41868 3.48202 3.49762 3.87899 4.20108 4.38083 4.52121 4.56494 4.61871 4.81657 4.98735 5.06584 5.20731 5.27394 5.32465 5.37122 5.51967 5.54115 5.57924 5.59855 5.77909 5.82064 5.97135 6.14550 6.27956 6.41305 6.55381 6.61124 6.64145 6.90522 6.95940 7.66861 7.79412 8.33877 8.38490 9.46452 9.99747 10.34509 11.38761 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.015691 B = 0.003383 C = 0.003039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1784.088186 B = 8275.717594 C = 9212.704250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.008 4.008 3 Si 0.908 3.092 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.247 4.247 8 H 0.073 0.927 9 N -0.712 5.712 10 C 0.174 3.826 11 H 0.064 0.936 12 C -0.140 4.140 13 C 0.109 3.891 14 N -0.600 5.600 15 C 0.606 3.394 16 O -0.533 6.533 17 C -0.249 4.249 18 C 0.160 3.840 19 Cl 0.024 6.976 20 N -0.275 5.275 21 N -0.449 5.449 22 H 0.445 0.555 23 C 0.174 3.826 24 C -0.108 4.108 25 C -0.170 4.170 26 C -0.156 4.156 27 C 0.082 3.918 28 H 0.256 0.744 29 H 0.387 0.613 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.138 0.862 35 H 0.093 0.907 36 H 0.111 0.889 37 H 0.113 0.887 38 H 0.100 0.900 39 H 0.072 0.928 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.407 -22.530 2.126 24.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.205 4.205 3 Si 0.738 3.262 4 H -0.204 1.204 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.378 4.378 8 H 0.091 0.909 9 N -0.352 5.352 10 C 0.061 3.939 11 H 0.082 0.918 12 C -0.178 4.178 13 C -0.014 4.014 14 N -0.333 5.333 15 C 0.391 3.609 16 O -0.410 6.410 17 C -0.264 4.264 18 C -0.033 4.033 19 Cl 0.051 6.949 20 N -0.100 5.100 21 N -0.158 5.158 22 H 0.291 0.709 23 C 0.042 3.958 24 C -0.128 4.128 25 C -0.207 4.207 26 C -0.193 4.193 27 C -0.043 4.043 28 H 0.066 0.934 29 H 0.222 0.778 30 H 0.098 0.902 31 H 0.096 0.904 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.156 0.844 35 H 0.111 0.889 36 H 0.130 0.870 37 H 0.131 0.869 38 H 0.118 0.882 39 H 0.090 0.910 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 8.478 -23.310 1.423 24.845 hybrid contribution 0.257 1.256 -0.025 1.282 sum 8.735 -22.054 1.398 23.762 Atomic orbital electron populations 1.69666 1.05164 1.25794 1.57115 1.24760 0.95509 0.97820 1.02404 0.86116 0.78893 0.83940 0.77213 1.20422 1.21751 1.21812 1.19296 0.91157 0.83880 1.43433 0.90874 1.42319 1.05817 0.99397 1.87682 1.21296 0.94562 0.86048 0.91970 0.91796 1.22903 1.00398 0.94190 1.00331 1.21939 0.94508 0.97257 0.87714 1.48447 1.47352 1.09017 1.28522 1.16696 0.78864 0.83948 0.81390 1.90799 1.45107 1.73793 1.31306 1.19725 1.01393 0.94954 1.10327 1.22549 0.92916 0.91051 0.96771 1.98433 1.39311 1.93958 1.63149 1.77161 1.01444 1.19744 1.11656 1.45746 1.24054 1.06456 1.39529 0.70852 1.20331 0.95429 0.83999 0.96050 1.20753 0.95366 1.01641 0.94994 1.23054 0.96830 0.97508 1.03345 1.23138 1.01626 1.03588 0.90968 1.23458 1.02074 0.76783 1.01949 0.93407 0.77829 0.90224 0.90408 0.92061 0.92004 0.84386 0.88894 0.87042 0.86911 0.88171 0.90960 0.91254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.29 13.06 55.49 0.72 -26.57 16 2 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 3 Si 0.91 21.94 29.55 -169.99 -5.02 16.91 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 7 C -0.25 -6.59 9.98 -15.06 -0.15 -6.74 16 8 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 9 N -0.71 -16.93 5.28 -51.35 -0.27 -17.20 16 10 C 0.17 3.23 3.69 -65.78 -0.24 2.99 16 11 H 0.06 1.19 8.13 -51.93 -0.42 0.77 16 12 C -0.14 -2.05 6.57 -24.89 -0.16 -2.21 16 13 C 0.11 1.45 6.47 -3.06 -0.02 1.43 16 14 N -0.60 -9.62 3.33 -171.80 -0.57 -10.19 16 15 C 0.61 10.18 7.34 -12.54 -0.09 10.09 16 16 O -0.53 -10.94 17.36 5.28 0.09 -10.85 16 17 C -0.25 -3.46 5.06 -105.04 -0.53 -3.99 16 18 C 0.16 2.17 7.89 -16.90 -0.13 2.04 16 19 Cl 0.02 0.31 29.19 -51.86 -1.51 -1.20 16 20 N -0.27 -3.34 12.64 33.18 0.42 -2.93 16 21 N -0.45 -4.06 7.17 33.86 0.24 -3.82 16 22 H 0.45 2.36 7.95 -182.73 -1.45 0.91 16 23 C 0.17 1.84 6.80 -81.60 -0.55 1.28 16 24 C -0.11 -0.90 6.02 -91.77 -0.55 -1.45 16 25 C -0.17 -0.87 10.14 -26.73 -0.27 -1.14 16 26 C -0.16 -0.92 10.23 -26.73 -0.27 -1.20 16 27 C 0.08 1.54 6.60 -2.53 -0.02 1.52 16 28 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 29 H 0.39 9.75 7.71 -40.82 -0.31 9.44 16 30 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.08 1.18 8.00 -51.92 -0.42 0.76 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.14 1.35 8.14 -51.93 -0.42 0.93 16 35 H 0.09 0.33 7.16 -51.93 -0.37 -0.04 16 36 H 0.11 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.11 0.62 8.14 -51.92 -0.42 0.20 16 38 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.07 1.45 8.04 -51.93 -0.42 1.03 16 40 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 LS Contribution 359.45 15.07 5.42 5.42 Total: -1.00 -32.88 359.45 -9.90 -42.79 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -6.32 Total: 5.35 kcal Atomic # 6 Polarization: 5.37 SS G_CDS: -3.10 Total: 2.28 kcal Atomic # 7 Polarization: -61.24 SS G_CDS: 0.54 Total: -60.70 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: 0.09 Total: -10.85 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.91 kcal Atomic # 17 Polarization: 0.31 SS G_CDS: -1.51 Total: -1.20 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.88 -9.90 -42.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018956022.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.862 kcal (2) G-P(sol) polarization free energy of solvation -32.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds