Wall clock time and date at job start Tue Mar 31 2020 13:34:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 119.99942 * 2 1 4 4 H 1.48503 * 109.46890 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47288 * 300.00478 * 3 2 1 6 6 H 1.48495 * 109.47078 * 60.00691 * 3 2 1 7 7 C 1.38810 * 120.00140 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00052 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99757 * 359.97438 * 7 2 1 10 10 C 1.46500 * 119.99729 * 180.02562 * 9 7 2 11 11 H 1.08997 * 110.91753 * 37.45235 * 10 9 7 12 12 C 1.55159 * 111.00599 * 161.35219 * 10 9 7 13 13 C 1.54329 * 103.02245 * 153.37817 * 12 10 9 14 14 N 1.47019 * 107.26632 * 338.14378 * 13 12 10 15 15 C 1.34784 * 125.64840 * 178.84700 * 14 13 12 16 16 O 1.21601 * 120.00065 * 179.69278 * 15 14 13 17 17 C 1.47382 * 119.99879 * 359.68957 * 15 14 13 18 18 C 1.41392 * 126.42011 * 89.68514 * 17 15 14 19 19 Cl 1.73606 * 126.00553 * 0.02562 * 18 17 15 20 20 N 1.30535 * 107.98979 * 179.88099 * 18 17 15 21 21 N 1.39927 * 108.89272 * 0.38262 * 20 18 17 22 22 H 0.96996 * 125.73975 * 179.71357 * 21 20 18 23 23 C 1.34233 * 108.52271 * 359.75483 * 21 20 18 24 24 C 1.50706 * 126.27712 * 179.97438 * 23 21 20 25 25 C 1.52998 * 117.50154 * 8.62512 * 24 23 21 26 26 C 1.52995 * 117.49912 * 299.99957 * 24 23 21 27 27 C 1.47426 * 108.70490 * 358.58408 * 14 13 12 28 28 H 0.96995 * 120.00080 * 359.97438 * 1 2 3 29 29 H 0.96999 * 120.00015 * 0.02562 * 9 7 2 30 30 H 1.08997 * 110.72042 * 271.94053 * 12 10 9 31 31 H 1.09007 * 110.71750 * 35.21050 * 12 10 9 32 32 H 1.08995 * 109.99478 * 218.66408 * 13 12 10 33 33 H 1.09007 * 109.77876 * 97.49919 * 13 12 10 34 34 H 1.09001 * 115.54494 * 154.33165 * 24 23 21 35 35 H 1.08999 * 117.49794 * 359.97438 * 25 24 23 36 36 H 1.08993 * 117.49733 * 145.01844 * 25 24 23 37 37 H 1.09010 * 117.49641 * 214.98070 * 26 24 23 38 38 H 1.08993 * 117.50208 * 359.97438 * 26 24 23 39 39 H 1.09002 * 110.36613 * 143.19417 * 27 14 13 40 40 H 1.08998 * 110.36249 * 265.40947 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3966 -1.2125 6 1 1.8916 2.3963 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 1 2.9526 -3.5896 0.6186 12 6 1.1477 -4.8247 0.4626 13 6 1.7799 -6.0526 -0.2260 14 7 2.5593 -5.5580 -1.3703 15 6 3.2828 -6.3187 -2.2156 16 8 3.8862 -5.8003 -3.1352 17 6 3.3426 -7.7790 -2.0252 18 6 2.4609 -8.7347 -2.5804 19 17 1.1078 -8.3959 -3.6140 20 7 2.8448 -9.9169 -2.1818 21 7 3.9673 -9.7750 -1.3585 22 1 4.4481 -10.4982 -0.9264 23 6 4.2664 -8.4697 -1.2665 24 6 5.4020 -7.8684 -0.4790 25 6 6.4269 -8.8284 0.1282 26 6 5.4210 -8.1119 1.0314 27 6 2.4133 -4.0928 -1.4439 28 1 -0.4850 0.8400 0.0004 29 1 0.3556 -2.3880 -0.0005 30 1 1.1772 -4.9300 1.5471 31 1 0.1247 -4.6769 0.1162 32 1 0.9985 -6.7282 -0.5739 33 1 2.4362 -6.5705 0.4734 34 1 5.7650 -6.9054 -0.8381 35 1 6.2797 -9.8950 -0.0416 36 1 7.4645 -8.4972 0.1685 37 1 5.7970 -7.3092 1.6659 38 1 4.6121 -8.7066 1.4555 39 1 3.3502 -3.6336 -1.7593 40 1 1.6104 -3.8257 -2.1311 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001018956022.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:23 Heat of formation + Delta-G solvation = 56.930198 kcal Electronic energy + Delta-G solvation = -25126.230932 eV Core-core repulsion = 21389.922176 eV Total energy + Delta-G solvation = -3736.308756 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.109 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.82383 -40.72222 -38.59064 -38.30586 -37.79465 -35.91009 -33.45598 -32.58375 -31.79240 -30.97628 -29.05993 -26.22439 -25.10792 -24.20269 -23.41981 -22.85004 -22.31159 -21.59876 -20.14362 -19.29279 -18.78412 -17.81965 -17.43376 -16.85109 -16.59296 -16.39366 -16.17699 -16.02892 -15.45308 -15.19105 -14.81194 -14.76292 -14.30156 -13.80176 -13.71378 -13.45905 -13.40197 -13.11112 -12.89162 -12.75177 -12.54235 -12.46397 -12.32580 -12.11990 -12.03543 -11.92204 -11.75206 -11.59808 -11.48070 -11.19453 -10.97495 -10.54848 -9.87265 -9.69252 -9.05414 -7.95020 -5.24714 0.28175 0.31337 0.90075 1.40962 1.49084 1.50842 1.59852 1.67765 2.09436 2.57501 2.80727 3.20455 3.35947 3.49163 3.62584 3.66503 3.78164 3.94014 3.97186 4.04117 4.14924 4.27993 4.38660 4.41197 4.57075 4.61364 4.71929 4.72010 4.88118 4.94234 5.02646 5.03520 5.17441 5.19562 5.24070 5.39551 5.55723 5.87190 6.13759 6.26957 6.50118 7.05764 7.34462 8.05994 8.29804 9.28044 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.015691 B = 0.003383 C = 0.003039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1784.088186 B = 8275.717594 C = 9212.704250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.068 4.068 3 Si 0.968 3.032 4 H -0.267 1.267 5 H -0.297 1.297 6 H -0.291 1.291 7 C -0.244 4.244 8 H 0.077 0.923 9 N -0.723 5.723 10 C 0.170 3.830 11 H 0.069 0.931 12 C -0.127 4.127 13 C 0.114 3.886 14 N -0.597 5.597 15 C 0.610 3.390 16 O -0.581 6.581 17 C -0.283 4.283 18 C 0.150 3.850 19 Cl 0.016 6.984 20 N -0.282 5.282 21 N -0.424 5.424 22 H 0.464 0.536 23 C 0.201 3.799 24 C -0.139 4.139 25 C -0.148 4.148 26 C -0.144 4.144 27 C 0.093 3.907 28 H 0.252 0.748 29 H 0.378 0.622 30 H 0.104 0.896 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.091 0.909 34 H 0.117 0.883 35 H 0.115 0.885 36 H 0.121 0.879 37 H 0.117 0.883 38 H 0.112 0.888 39 H 0.050 0.950 40 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.011 -24.941 4.040 27.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.261 4.261 3 Si 0.798 3.202 4 H -0.191 1.191 5 H -0.224 1.224 6 H -0.218 1.218 7 C -0.376 4.376 8 H 0.095 0.905 9 N -0.362 5.362 10 C 0.059 3.941 11 H 0.087 0.913 12 C -0.165 4.165 13 C -0.008 4.008 14 N -0.329 5.329 15 C 0.398 3.602 16 O -0.461 6.461 17 C -0.299 4.299 18 C -0.042 4.042 19 Cl 0.044 6.956 20 N -0.108 5.108 21 N -0.136 5.136 22 H 0.315 0.685 23 C 0.068 3.932 24 C -0.160 4.160 25 C -0.185 4.185 26 C -0.181 4.181 27 C -0.033 4.033 28 H 0.060 0.940 29 H 0.211 0.789 30 H 0.123 0.877 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.110 0.890 34 H 0.135 0.865 35 H 0.134 0.866 36 H 0.140 0.860 37 H 0.136 0.864 38 H 0.130 0.870 39 H 0.069 0.931 40 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 10.110 -25.807 3.367 27.921 hybrid contribution -0.145 1.895 -0.603 1.994 sum 9.965 -23.912 2.764 26.052 Atomic orbital electron populations 1.69802 1.06514 1.26067 1.59195 1.25499 0.96296 1.00911 1.03410 0.85155 0.78358 0.80134 0.76598 1.19102 1.22446 1.21775 1.19642 0.91496 0.85070 1.41344 0.90548 1.42454 1.05549 1.00475 1.87764 1.21441 0.95306 0.85492 0.91816 0.91314 1.22835 0.99141 0.92584 1.01933 1.22082 0.95008 0.96720 0.87004 1.48441 1.47453 1.07700 1.29325 1.17069 0.77674 0.85156 0.80346 1.90762 1.47059 1.75039 1.33261 1.19483 1.03766 0.93157 1.13482 1.22560 0.93067 0.91380 0.97186 1.98424 1.39692 1.94062 1.63464 1.77122 1.02458 1.19020 1.12167 1.45715 1.23005 1.06586 1.38276 0.68511 1.20494 0.94414 0.84049 0.94292 1.20744 0.96495 1.02039 0.96692 1.23249 0.96681 0.98035 1.00508 1.23262 1.02127 1.03791 0.88937 1.23049 1.00052 0.78881 1.01364 0.93952 0.78934 0.87728 0.90993 0.90826 0.89047 0.86452 0.86649 0.86031 0.86437 0.86975 0.93090 0.93590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.80 13.06 21.65 0.28 -57.51 16 2 C -0.07 -3.84 5.50 84.86 0.47 -3.38 16 3 Si 0.97 45.55 29.55 68.60 2.03 47.58 16 4 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 5 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 6 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 7 C -0.24 -13.13 9.98 84.03 0.84 -12.29 16 8 H 0.08 3.98 7.83 -2.91 -0.02 3.96 16 9 N -0.72 -34.78 5.28 -316.37 -1.67 -36.45 16 10 C 0.17 6.29 3.69 46.38 0.17 6.46 16 11 H 0.07 2.50 8.13 -2.39 -0.02 2.48 16 12 C -0.13 -3.49 6.57 31.79 0.21 -3.28 16 13 C 0.11 2.78 6.47 86.73 0.56 3.34 16 14 N -0.60 -19.03 3.33 -815.70 -2.71 -21.74 16 15 C 0.61 20.68 7.34 86.65 0.64 21.31 16 16 O -0.58 -24.76 17.36 -4.03 -0.07 -24.83 16 17 C -0.28 -7.61 5.06 -20.14 -0.10 -7.71 16 18 C 0.15 3.93 7.89 85.66 0.68 4.60 16 19 Cl 0.02 0.42 29.19 -2.72 -0.08 0.34 16 20 N -0.28 -6.28 12.64 -48.94 -0.62 -6.90 16 21 N -0.42 -6.36 7.17 -46.79 -0.34 -6.70 16 22 H 0.46 2.99 7.95 -213.44 -1.70 1.29 16 23 C 0.20 3.80 6.80 42.15 0.29 4.08 16 24 C -0.14 -1.98 6.02 -11.54 -0.07 -2.05 16 25 C -0.15 -0.93 10.14 30.59 0.31 -0.62 16 26 C -0.14 -1.15 10.23 30.59 0.31 -0.84 16 27 C 0.09 3.55 6.60 86.86 0.57 4.12 16 28 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 29 H 0.38 19.41 7.71 -92.71 -0.71 18.70 16 30 H 0.10 2.41 8.14 -2.39 -0.02 2.39 16 31 H 0.07 2.11 8.00 -2.38 -0.02 2.09 16 32 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.09 1.75 8.14 -2.38 -0.02 1.73 16 34 H 0.12 2.22 8.14 -2.39 -0.02 2.20 16 35 H 0.12 0.22 7.16 -2.39 -0.02 0.20 16 36 H 0.12 0.58 8.14 -2.39 -0.02 0.56 16 37 H 0.12 0.88 8.14 -2.38 -0.02 0.86 16 38 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.05 2.14 8.04 -2.39 -0.02 2.12 16 40 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -73.58 359.45 0.38 -73.19 By element: Atomic # 1 Polarization: 20.58 SS G_CDS: -1.31 Total: 19.27 kcal Atomic # 6 Polarization: 8.88 SS G_CDS: 4.87 Total: 13.75 kcal Atomic # 7 Polarization: -124.25 SS G_CDS: -5.05 Total: -129.30 kcal Atomic # 8 Polarization: -24.76 SS G_CDS: -0.07 Total: -24.83 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.58 kcal Atomic # 17 Polarization: 0.42 SS G_CDS: -0.08 Total: 0.34 kcal Total: -73.58 0.38 -73.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018956022.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.125 kcal (2) G-P(sol) polarization free energy of solvation -73.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.194 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds