Wall clock time and date at job start Tue Mar 31 2020 13:34:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99918 * 2 1 4 4 H 1.48500 * 109.47177 * 269.99762 * 3 2 1 5 5 H 1.48510 * 109.47185 * 29.99794 * 3 2 1 6 6 H 1.48503 * 109.47086 * 149.99688 * 3 2 1 7 7 C 1.38813 * 120.00238 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00011 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99384 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99541 * 180.02562 * 9 7 2 11 11 H 1.09001 * 110.91822 * 31.09677 * 10 9 7 12 12 C 1.55157 * 111.00374 * 155.00401 * 10 9 7 13 13 C 1.54321 * 103.10033 * 153.66359 * 12 10 9 14 14 N 1.47019 * 107.27531 * 337.71659 * 13 12 10 15 15 C 1.34777 * 125.65068 * 178.90607 * 14 13 12 16 16 O 1.21573 * 119.99879 * 180.02562 * 15 14 13 17 17 C 1.47662 * 119.99692 * 0.02562 * 15 14 13 18 18 N 1.31821 * 126.46644 * 0.02562 * 17 15 14 19 19 N 1.28467 * 110.13919 * 180.02562 * 18 17 15 20 20 H 0.96999 * 124.93781 * 180.02562 * 19 18 17 21 21 C 1.35637 * 110.13128 * 359.97438 * 19 18 17 22 22 C 1.50702 * 126.43424 * 179.97438 * 21 19 18 23 23 C 1.52995 * 117.50154 * 8.60315 * 22 21 19 24 24 C 1.52994 * 60.00054 * 252.50929 * 23 22 21 25 25 C 1.35460 * 107.13113 * 359.72923 * 21 19 18 26 26 Cl 1.73606 * 127.23868 * 180.25432 * 25 21 19 27 27 C 1.47431 * 108.70142 * 358.94050 * 14 13 12 28 28 H 0.97002 * 119.99832 * 0.02562 * 1 2 3 29 29 H 0.96996 * 120.00953 * 0.02562 * 9 7 2 30 30 H 1.09002 * 110.72219 * 35.21056 * 12 10 9 31 31 H 1.09003 * 110.71618 * 272.11669 * 12 10 9 32 32 H 1.09001 * 109.88480 * 97.13771 * 13 12 10 33 33 H 1.09004 * 109.87910 * 218.29695 * 13 12 10 34 34 H 1.09001 * 115.54771 * 154.30933 * 22 21 19 35 35 H 1.09001 * 117.49483 * 359.97438 * 23 22 21 36 36 H 1.08997 * 117.50143 * 145.01753 * 23 22 21 37 37 H 1.09008 * 117.49616 * 252.51080 * 24 23 22 38 38 H 1.08999 * 117.52206 * 107.47567 * 24 23 22 39 39 H 1.08999 * 110.36190 * 142.96411 * 27 14 13 40 40 H 1.08998 * 110.36491 * 265.18090 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4475 2.6528 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0017 11 1 3.0073 -3.5576 0.5282 12 6 1.1988 -4.7945 0.6136 13 6 1.7694 -6.0625 -0.0558 14 7 2.4303 -5.6400 -1.2992 15 6 3.0724 -6.4517 -2.1626 16 8 3.5851 -5.9906 -3.1638 17 6 3.1530 -7.9012 -1.8923 18 7 2.6457 -8.5338 -0.8530 19 7 2.9008 -9.7903 -0.9323 20 1 2.6270 -10.4550 -0.2810 21 6 3.6079 -10.0529 -2.0596 22 6 4.0997 -11.4032 -2.5136 23 6 3.6110 -12.6296 -1.7404 24 6 5.0571 -12.1546 -1.5865 25 6 3.7842 -8.8743 -2.7037 26 17 4.6141 -8.6117 -4.2057 27 6 2.2752 -4.1811 -1.4449 28 1 -0.4850 0.8401 -0.0004 29 1 0.3556 -2.3881 -0.0002 30 1 0.1472 -4.6636 0.3582 31 1 1.3292 -4.8373 1.6949 32 1 2.4936 -6.5373 0.6062 33 1 0.9609 -6.7574 -0.2833 34 1 4.2501 -11.5120 -3.5877 35 1 2.9340 -12.4598 -0.9032 36 1 3.4396 -13.5456 -2.3058 37 1 5.8372 -12.7581 -2.0507 38 1 5.3316 -11.6721 -0.6484 39 1 3.1769 -3.7449 -1.8747 40 1 1.4100 -3.9519 -2.0669 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001019089945.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:18 Heat of formation + Delta-G solvation = 81.870187 kcal Electronic energy + Delta-G solvation = -24502.390720 eV Core-core repulsion = 20767.163443 eV Total energy + Delta-G solvation = -3735.227277 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.109 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.08121 -39.45930 -37.74114 -37.14889 -36.54808 -34.10640 -32.18037 -31.40916 -30.75292 -29.52185 -27.58405 -24.93926 -24.01524 -23.13764 -22.94067 -22.03104 -21.38905 -20.08078 -18.80439 -18.29058 -17.33739 -16.79241 -16.39347 -16.01799 -15.65461 -15.10500 -14.97768 -14.49326 -14.30218 -13.90548 -13.40375 -13.15956 -12.94798 -12.67793 -12.34154 -12.24542 -12.22492 -12.13773 -11.76518 -11.49674 -11.28775 -11.13863 -11.04342 -10.80719 -10.75733 -10.65464 -10.24585 -10.01716 -9.83887 -9.71105 -9.58920 -8.98563 -8.93831 -8.25408 -7.04975 -5.81203 -3.11645 1.26236 1.55519 1.83196 2.61862 3.17589 3.25006 3.43917 3.44691 3.49703 3.50693 3.85339 4.11274 4.23670 4.33998 4.49017 4.57222 4.78911 4.97683 5.08846 5.13141 5.24466 5.33851 5.40102 5.41058 5.48150 5.59710 5.64844 5.81192 5.90966 6.07869 6.19899 6.33317 6.46055 6.46367 6.61110 6.68638 6.92966 7.41340 7.68913 7.80370 8.35671 8.38620 9.48501 10.01875 10.36972 11.40858 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.027273 B = 0.002572 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.419304 B =10883.353020 C =11588.700933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.009 4.009 3 Si 0.909 3.091 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.247 4.247 8 H 0.073 0.927 9 N -0.710 5.710 10 C 0.173 3.827 11 H 0.068 0.932 12 C -0.143 4.143 13 C 0.114 3.886 14 N -0.599 5.599 15 C 0.604 3.396 16 O -0.522 6.522 17 C 0.017 3.983 18 N -0.236 5.236 19 N -0.378 5.378 20 H 0.448 0.552 21 C 0.059 3.941 22 C -0.091 4.091 23 C -0.174 4.174 24 C -0.163 4.163 25 C -0.095 4.095 26 Cl -0.005 7.005 27 C 0.082 3.918 28 H 0.256 0.744 29 H 0.387 0.613 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.135 0.865 35 H 0.092 0.908 36 H 0.109 0.891 37 H 0.108 0.892 38 H 0.098 0.902 39 H 0.073 0.927 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.530 -28.993 -1.272 29.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.206 4.206 3 Si 0.740 3.260 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.378 4.378 8 H 0.091 0.909 9 N -0.350 5.350 10 C 0.060 3.940 11 H 0.086 0.914 12 C -0.182 4.182 13 C -0.009 4.009 14 N -0.332 5.332 15 C 0.389 3.611 16 O -0.396 6.396 17 C -0.145 4.145 18 N -0.071 5.071 19 N -0.094 5.094 20 H 0.294 0.706 21 C -0.068 4.068 22 C -0.110 4.110 23 C -0.211 4.211 24 C -0.200 4.200 25 C -0.132 4.132 26 Cl 0.023 6.977 27 C -0.043 4.043 28 H 0.066 0.934 29 H 0.222 0.778 30 H 0.094 0.906 31 H 0.097 0.903 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.153 0.847 35 H 0.110 0.890 36 H 0.127 0.873 37 H 0.126 0.874 38 H 0.116 0.884 39 H 0.092 0.908 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 6.409 -28.324 -1.007 29.057 hybrid contribution 0.379 0.356 -0.516 0.732 sum 6.787 -27.968 -1.524 28.820 Atomic orbital electron populations 1.69662 1.05159 1.25887 1.57095 1.24771 0.95537 0.97848 1.02432 0.86168 0.78668 0.83572 0.77636 1.21552 1.21749 1.20645 1.19279 0.91158 0.83892 1.43469 0.90885 1.42310 1.05824 0.99408 1.87415 1.21395 0.95255 0.86016 0.91318 0.91356 1.22986 1.00770 0.94201 1.00287 1.22014 0.96577 0.97127 0.85212 1.48330 1.52889 1.09419 1.22581 1.16390 0.79301 0.82453 0.82964 1.90841 1.47107 1.74896 1.26751 1.21959 1.03474 0.95644 0.93431 1.73850 1.20241 0.90803 1.22169 1.43198 1.40528 1.06721 1.18922 0.70597 1.20097 1.01300 0.95219 0.90160 1.20513 1.05066 0.85965 0.99489 1.23042 0.97634 0.97881 1.02571 1.23119 0.93362 1.02447 1.01111 1.20390 1.06600 0.92052 0.94190 1.98362 1.75741 1.96468 1.27084 1.23562 1.02035 0.76542 1.02150 0.93373 0.77849 0.90600 0.90313 0.91387 0.91588 0.84710 0.88964 0.87275 0.87360 0.88350 0.90828 0.91259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.72 13.06 55.49 0.72 -27.00 16 2 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 3 Si 0.91 22.33 29.55 -169.99 -5.02 17.31 16 4 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 7 C -0.25 -6.76 9.96 -15.06 -0.15 -6.91 16 8 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 9 N -0.71 -17.40 5.26 -51.10 -0.27 -17.67 16 10 C 0.17 3.40 3.74 -65.52 -0.24 3.15 16 11 H 0.07 1.36 8.09 -51.93 -0.42 0.94 16 12 C -0.14 -2.25 6.58 -24.90 -0.16 -2.41 16 13 C 0.11 1.64 5.54 -3.07 -0.02 1.62 16 14 N -0.60 -10.32 3.33 -171.39 -0.57 -10.89 16 15 C 0.60 10.79 7.85 -12.41 -0.10 10.70 16 16 O -0.52 -10.75 16.13 5.30 0.09 -10.67 16 17 C 0.02 0.26 6.97 -82.76 -0.58 -0.32 16 18 N -0.24 -2.82 9.74 33.42 0.33 -2.50 16 19 N -0.38 -3.18 6.77 33.62 0.23 -2.95 16 20 H 0.45 2.03 7.94 -190.44 -1.51 0.51 16 21 C 0.06 0.54 6.75 -81.90 -0.55 -0.01 16 22 C -0.09 -0.55 6.13 -91.78 -0.56 -1.11 16 23 C -0.17 -0.62 10.15 -26.74 -0.27 -0.90 16 24 C -0.16 -0.71 10.23 -26.74 -0.27 -0.98 16 25 C -0.09 -1.23 6.79 -39.31 -0.27 -1.49 16 26 Cl -0.01 -0.07 28.02 -51.86 -1.45 -1.52 16 27 C 0.08 1.60 6.63 -2.26 -0.01 1.58 16 28 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 29 H 0.39 9.99 7.76 -40.82 -0.32 9.67 16 30 H 0.08 1.21 8.00 -51.93 -0.42 0.79 16 31 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 32 H 0.07 0.90 7.66 -51.93 -0.40 0.51 16 33 H 0.07 0.88 7.77 -51.93 -0.40 0.48 16 34 H 0.14 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.09 0.23 7.16 -51.93 -0.37 -0.14 16 36 H 0.11 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.11 0.36 8.14 -51.92 -0.42 -0.06 16 38 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.07 1.53 8.04 -51.93 -0.42 1.12 16 40 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 LS Contribution 353.40 15.07 5.33 5.33 Total: -1.00 -33.18 353.40 -10.25 -43.43 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -6.34 Total: 4.59 kcal Atomic # 6 Polarization: 5.84 SS G_CDS: -3.29 Total: 2.55 kcal Atomic # 7 Polarization: -61.45 SS G_CDS: 0.44 Total: -61.01 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: 0.09 Total: -10.67 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Atomic # 17 Polarization: -0.07 SS G_CDS: -1.45 Total: -1.52 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -33.18 -10.25 -43.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019089945.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.298 kcal (2) G-P(sol) polarization free energy of solvation -33.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds