Wall clock time and date at job start Tue Mar 31 2020 13:34:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99918 * 2 1 4 4 H 1.48500 * 109.47177 * 269.99762 * 3 2 1 5 5 H 1.48510 * 109.47185 * 29.99794 * 3 2 1 6 6 H 1.48503 * 109.47086 * 149.99688 * 3 2 1 7 7 C 1.38813 * 120.00238 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00011 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99384 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99541 * 180.02562 * 9 7 2 11 11 H 1.09001 * 110.91822 * 31.09677 * 10 9 7 12 12 C 1.55157 * 111.00374 * 155.00401 * 10 9 7 13 13 C 1.54321 * 103.10033 * 153.66359 * 12 10 9 14 14 N 1.47019 * 107.27531 * 337.71659 * 13 12 10 15 15 C 1.34777 * 125.65068 * 178.90607 * 14 13 12 16 16 O 1.21573 * 119.99879 * 180.02562 * 15 14 13 17 17 C 1.47662 * 119.99692 * 0.02562 * 15 14 13 18 18 N 1.31821 * 126.46644 * 0.02562 * 17 15 14 19 19 N 1.28467 * 110.13919 * 180.02562 * 18 17 15 20 20 H 0.96999 * 124.93781 * 180.02562 * 19 18 17 21 21 C 1.35637 * 110.13128 * 359.97438 * 19 18 17 22 22 C 1.50702 * 126.43424 * 179.97438 * 21 19 18 23 23 C 1.52995 * 117.50154 * 8.60315 * 22 21 19 24 24 C 1.52994 * 60.00054 * 252.50929 * 23 22 21 25 25 C 1.35460 * 107.13113 * 359.72923 * 21 19 18 26 26 Cl 1.73606 * 127.23868 * 180.25432 * 25 21 19 27 27 C 1.47431 * 108.70142 * 358.94050 * 14 13 12 28 28 H 0.97002 * 119.99832 * 0.02562 * 1 2 3 29 29 H 0.96996 * 120.00953 * 0.02562 * 9 7 2 30 30 H 1.09002 * 110.72219 * 35.21056 * 12 10 9 31 31 H 1.09003 * 110.71618 * 272.11669 * 12 10 9 32 32 H 1.09001 * 109.88480 * 97.13771 * 13 12 10 33 33 H 1.09004 * 109.87910 * 218.29695 * 13 12 10 34 34 H 1.09001 * 115.54771 * 154.30933 * 22 21 19 35 35 H 1.09001 * 117.49483 * 359.97438 * 23 22 21 36 36 H 1.08997 * 117.50143 * 145.01753 * 23 22 21 37 37 H 1.09008 * 117.49616 * 252.51080 * 24 23 22 38 38 H 1.08999 * 117.52206 * 107.47567 * 24 23 22 39 39 H 1.08999 * 110.36190 * 142.96411 * 27 14 13 40 40 H 1.08998 * 110.36491 * 265.18090 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4475 2.6528 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0017 11 1 3.0073 -3.5576 0.5282 12 6 1.1988 -4.7945 0.6136 13 6 1.7694 -6.0625 -0.0558 14 7 2.4303 -5.6400 -1.2992 15 6 3.0724 -6.4517 -2.1626 16 8 3.5851 -5.9906 -3.1638 17 6 3.1530 -7.9012 -1.8923 18 7 2.6457 -8.5338 -0.8530 19 7 2.9008 -9.7903 -0.9323 20 1 2.6270 -10.4550 -0.2810 21 6 3.6079 -10.0529 -2.0596 22 6 4.0997 -11.4032 -2.5136 23 6 3.6110 -12.6296 -1.7404 24 6 5.0571 -12.1546 -1.5865 25 6 3.7842 -8.8743 -2.7037 26 17 4.6141 -8.6117 -4.2057 27 6 2.2752 -4.1811 -1.4449 28 1 -0.4850 0.8401 -0.0004 29 1 0.3556 -2.3881 -0.0002 30 1 0.1472 -4.6636 0.3582 31 1 1.3292 -4.8373 1.6949 32 1 2.4936 -6.5373 0.6062 33 1 0.9609 -6.7574 -0.2833 34 1 4.2501 -11.5120 -3.5877 35 1 2.9340 -12.4598 -0.9032 36 1 3.4396 -13.5456 -2.3058 37 1 5.8372 -12.7581 -2.0507 38 1 5.3316 -11.6721 -0.6484 39 1 3.1769 -3.7449 -1.8747 40 1 1.4100 -3.9519 -2.0669 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001019089945.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:18 Heat of formation + Delta-G solvation = 59.747745 kcal Electronic energy + Delta-G solvation = -24503.350021 eV Core-core repulsion = 20767.163443 eV Total energy + Delta-G solvation = -3736.186578 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.109 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.96137 -40.85546 -38.65154 -38.15601 -37.51477 -35.95316 -33.57018 -32.77262 -31.69584 -31.04954 -29.16881 -26.43066 -25.18998 -24.32810 -23.42367 -23.11514 -22.19021 -21.66705 -20.06830 -19.27891 -19.04514 -17.90395 -17.55029 -16.98567 -16.70882 -16.46352 -16.18723 -15.82259 -15.49976 -15.16062 -14.94321 -14.74684 -14.26319 -13.79889 -13.74959 -13.53207 -13.18320 -13.10774 -12.89822 -12.68978 -12.45350 -12.37824 -12.27601 -12.11022 -12.00720 -11.83283 -11.75653 -11.57423 -11.46458 -11.16007 -10.98579 -10.50597 -9.79057 -9.65952 -9.07794 -7.96913 -5.26955 0.28539 0.62998 0.97311 1.48024 1.50073 1.57760 1.67600 2.02772 2.15228 2.55779 2.87748 3.10278 3.34278 3.36507 3.62369 3.66668 3.78781 3.95698 3.99817 4.02981 4.12146 4.28570 4.38708 4.47972 4.55080 4.58972 4.75402 4.76546 4.90108 4.99713 5.02145 5.07853 5.17844 5.20164 5.22815 5.37045 5.52745 5.82408 6.24697 6.42251 6.54992 7.01218 7.32081 8.02735 8.27742 9.25794 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.027273 B = 0.002572 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.419304 B =10883.353020 C =11588.700933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.069 4.069 3 Si 0.971 3.029 4 H -0.290 1.290 5 H -0.293 1.293 6 H -0.269 1.269 7 C -0.247 4.247 8 H 0.076 0.924 9 N -0.721 5.721 10 C 0.168 3.832 11 H 0.067 0.933 12 C -0.130 4.130 13 C 0.122 3.878 14 N -0.601 5.601 15 C 0.599 3.401 16 O -0.561 6.561 17 C -0.012 4.012 18 N -0.231 5.231 19 N -0.352 5.352 20 H 0.468 0.532 21 C 0.088 3.912 22 C -0.116 4.116 23 C -0.154 4.154 24 C -0.157 4.157 25 C -0.125 4.125 26 Cl -0.018 7.018 27 C 0.093 3.907 28 H 0.252 0.748 29 H 0.378 0.622 30 H 0.074 0.926 31 H 0.100 0.900 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.135 0.865 35 H 0.108 0.892 36 H 0.124 0.876 37 H 0.119 0.881 38 H 0.098 0.902 39 H 0.051 0.949 40 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.026 -32.105 0.200 32.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.615 5.615 2 C -0.262 4.262 3 Si 0.800 3.200 4 H -0.218 1.218 5 H -0.219 1.219 6 H -0.194 1.194 7 C -0.379 4.379 8 H 0.094 0.906 9 N -0.360 5.360 10 C 0.057 3.943 11 H 0.085 0.915 12 C -0.169 4.169 13 C 0.000 4.000 14 N -0.334 5.334 15 C 0.386 3.614 16 O -0.438 6.438 17 C -0.173 4.173 18 N -0.068 5.068 19 N -0.071 5.071 20 H 0.319 0.681 21 C -0.040 4.040 22 C -0.136 4.136 23 C -0.191 4.191 24 C -0.195 4.195 25 C -0.162 4.162 26 Cl 0.011 6.989 27 C -0.033 4.033 28 H 0.061 0.939 29 H 0.211 0.789 30 H 0.093 0.907 31 H 0.119 0.881 32 H 0.105 0.895 33 H 0.101 0.899 34 H 0.153 0.847 35 H 0.126 0.874 36 H 0.142 0.858 37 H 0.138 0.862 38 H 0.117 0.883 39 H 0.070 0.930 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 6.922 -31.502 0.502 32.258 hybrid contribution 0.260 1.128 -0.965 1.507 sum 7.182 -30.375 -0.464 31.216 Atomic orbital electron populations 1.69800 1.06487 1.26211 1.58985 1.25537 0.96379 1.01003 1.03293 0.85183 0.77858 0.79652 0.77314 1.21762 1.21940 1.19358 1.19622 0.91481 0.85098 1.41697 0.90649 1.42419 1.05540 1.00382 1.87618 1.21525 0.95680 0.85534 0.91543 0.91469 1.22905 0.99840 0.92669 1.01440 1.22113 0.97265 0.96607 0.84020 1.48346 1.53193 1.08218 1.23606 1.16843 0.78393 0.83872 0.82287 1.90803 1.48660 1.76030 1.28328 1.21471 1.06204 0.94147 0.95439 1.73736 1.19873 0.92066 1.21132 1.43282 1.38897 1.06071 1.18885 0.68129 1.20420 0.99027 0.95518 0.88997 1.20625 1.07685 0.85207 1.00050 1.23224 0.97170 0.96663 1.02061 1.23219 0.94240 1.01674 1.00328 1.20565 1.08108 0.93044 0.94508 1.98347 1.76058 1.96626 1.27902 1.23144 1.00143 0.78523 1.01475 0.93872 0.78876 0.90738 0.88145 0.89516 0.89900 0.84709 0.87402 0.85796 0.86243 0.88349 0.93050 0.93058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.55 13.06 21.65 0.28 -58.27 16 2 C -0.07 -3.97 5.50 84.86 0.47 -3.51 16 3 Si 0.97 46.40 29.55 68.60 2.03 48.43 16 4 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 5 H -0.29 -13.97 7.11 99.48 0.71 -13.27 16 6 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 7 C -0.25 -13.69 9.96 84.03 0.84 -12.85 16 8 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 9 N -0.72 -35.85 5.26 -315.57 -1.66 -37.51 16 10 C 0.17 6.63 3.74 46.55 0.17 6.80 16 11 H 0.07 2.67 8.09 -2.39 -0.02 2.65 16 12 C -0.13 -3.88 6.58 31.78 0.21 -3.67 16 13 C 0.12 3.28 5.54 86.73 0.48 3.76 16 14 N -0.60 -20.73 3.33 -814.42 -2.71 -23.44 16 15 C 0.60 21.73 7.85 86.73 0.68 22.41 16 16 O -0.56 -24.11 16.13 -3.95 -0.06 -24.17 16 17 C -0.01 -0.35 6.97 42.45 0.30 -0.05 16 18 N -0.23 -5.00 9.74 -48.17 -0.47 -5.47 16 19 N -0.35 -4.81 6.77 -47.55 -0.32 -5.13 16 20 H 0.47 2.23 7.94 -219.99 -1.75 0.49 16 21 C 0.09 1.42 6.75 41.33 0.28 1.70 16 22 C -0.12 -1.08 6.13 -11.54 -0.07 -1.15 16 23 C -0.15 -0.46 10.15 30.59 0.31 -0.15 16 24 C -0.16 -0.82 10.23 30.59 0.31 -0.51 16 25 C -0.12 -3.14 6.79 22.44 0.15 -2.98 16 26 Cl -0.02 -0.48 28.02 -2.72 -0.08 -0.55 16 27 C 0.09 3.74 6.63 87.02 0.58 4.32 16 28 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 29 H 0.38 19.94 7.76 -92.71 -0.72 19.22 16 30 H 0.07 2.28 8.00 -2.39 -0.02 2.26 16 31 H 0.10 2.60 8.14 -2.39 -0.02 2.58 16 32 H 0.09 2.06 7.66 -2.39 -0.02 2.04 16 33 H 0.08 2.00 7.77 -2.38 -0.02 1.98 16 34 H 0.14 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.11 0.00 7.16 -2.39 -0.02 -0.02 16 36 H 0.12 0.08 8.14 -2.39 -0.02 0.06 16 37 H 0.12 0.39 8.14 -2.38 -0.02 0.37 16 38 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 39 H 0.05 2.25 8.04 -2.39 -0.02 2.24 16 40 H 0.05 2.22 8.14 -2.39 -0.02 2.21 16 Total: -1.00 -74.18 353.40 0.35 -73.83 By element: Atomic # 1 Polarization: 19.52 SS G_CDS: -1.37 Total: 18.16 kcal Atomic # 6 Polarization: 9.42 SS G_CDS: 4.71 Total: 14.12 kcal Atomic # 7 Polarization: -124.93 SS G_CDS: -4.88 Total: -129.81 kcal Atomic # 8 Polarization: -24.11 SS G_CDS: -0.06 Total: -24.17 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 2.03 Total: 48.43 kcal Atomic # 17 Polarization: -0.48 SS G_CDS: -0.08 Total: -0.55 kcal Total: -74.18 0.35 -73.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019089945.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.574 kcal (2) G-P(sol) polarization free energy of solvation -74.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.826 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds