Wall clock time and date at job start Tue Mar 31 2020 13:38:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 119.99846 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99598 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99591 * 3 2 1 7 7 C 1.38811 * 120.00460 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00021 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99586 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99727 * 179.97438 * 9 7 2 11 11 H 1.08997 * 110.44121 * 36.10997 * 10 9 7 12 12 C 1.55941 * 110.49660 * 273.54816 * 10 9 7 13 13 C 1.56400 * 105.78664 * 233.79183 * 12 10 9 14 14 C 1.50996 * 101.59468 * 334.97784 * 13 12 10 15 15 H 1.08994 * 110.04756 * 291.26031 * 14 13 12 16 16 C 1.50345 * 125.58192 * 156.03999 * 14 13 12 17 17 N 1.49216 * 104.85963 * 215.65979 * 16 14 13 18 18 C 1.34773 * 126.06136 * 187.04692 * 17 16 14 19 19 O 1.21735 * 119.99969 * 179.97438 * 18 17 16 20 20 C 1.46287 * 119.99606 * 359.97350 * 18 17 16 21 21 S 1.75828 * 125.46825 * 0.02895 * 20 18 17 22 22 C 1.70599 * 91.60671 * 179.97438 * 21 20 18 23 23 C 1.33733 * 111.04420 * 359.97438 * 22 21 20 24 24 C 1.36927 * 125.46493 * 179.72024 * 20 18 17 25 25 F 1.35108 * 123.40394 * 0.02562 * 24 20 18 26 26 C 1.49701 * 107.88022 * 7.06927 * 17 16 14 27 27 C 1.50302 * 110.49068 * 158.80951 * 10 9 7 28 28 H 1.08996 * 110.00360 * 38.17969 * 27 10 9 29 29 H 0.97001 * 119.99952 * 179.97438 * 1 2 3 30 30 H 0.96998 * 120.00177 * 0.02562 * 9 7 2 31 31 H 1.09001 * 110.18531 * 352.87103 * 12 10 9 32 32 H 1.08996 * 110.18602 * 114.63607 * 12 10 9 33 33 H 1.09001 * 111.00400 * 93.05564 * 13 12 10 34 34 H 1.09001 * 111.00346 * 216.90129 * 13 12 10 35 35 H 1.08995 * 110.36047 * 334.50886 * 16 14 13 36 36 H 1.09000 * 110.35716 * 96.70745 * 16 14 13 37 37 H 1.08001 * 124.47811 * 180.02562 * 22 21 20 38 38 H 1.08000 * 122.45436 * 180.02562 * 23 22 21 39 39 H 1.09000 * 110.84442 * 143.33104 * 26 17 16 40 40 H 1.08997 * 110.84394 * 266.93928 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 1.2851 2.7465 -0.0006 5 1 3.1040 1.6964 -1.2125 6 1 3.1038 1.6966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0582 -3.6567 0.0005 11 1 2.9631 -3.5738 0.6024 12 6 2.4095 -4.0844 -1.4574 13 6 1.8555 -5.5379 -1.6196 14 6 1.8464 -6.0207 -0.1889 15 1 2.8680 -6.1398 0.1717 16 6 0.9752 -7.1167 0.3590 17 7 0.6369 -6.6799 1.7451 18 6 -0.0177 -7.4101 2.6695 19 8 -0.2357 -6.9423 3.7720 20 6 -0.4662 -8.7649 2.3479 21 16 -0.2287 -9.5797 0.8080 22 6 -1.0276 -10.9783 1.3702 23 6 -1.4371 -10.8223 2.6337 24 6 -1.1331 -9.6042 3.1998 25 9 -1.4625 -9.2699 4.4668 26 6 1.1530 -5.2864 1.9267 27 6 1.1845 -4.7688 0.5095 28 1 0.1649 -4.6374 0.1473 29 1 -0.4850 -0.8401 -0.0004 30 1 0.3556 -2.3881 -0.0002 31 1 1.9281 -3.4164 -2.1716 32 1 3.4897 -4.0740 -1.6024 33 1 0.8478 -5.5279 -2.0349 34 1 2.5227 -6.1442 -2.2322 35 1 0.0695 -7.2160 -0.2391 36 1 1.5207 -8.0602 0.3794 37 1 -1.1816 -11.8719 0.7835 38 1 -1.9641 -11.5962 3.1719 39 1 0.4712 -4.6971 2.5398 40 1 2.1539 -5.2967 2.3581 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026256583.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:47 Heat of formation + Delta-G solvation = -9.566007 kcal Electronic energy + Delta-G solvation = -25021.003973 eV Core-core repulsion = 21263.935471 eV Total energy + Delta-G solvation = -3757.068503 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.105 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.05150 -40.68531 -38.87175 -37.47788 -35.52317 -33.71900 -31.06851 -30.80105 -29.02419 -28.53575 -25.54659 -25.10867 -23.46348 -22.97291 -21.08095 -20.39875 -19.75403 -19.37329 -18.23702 -17.34901 -17.09136 -16.45076 -16.22179 -15.90834 -15.20835 -14.93796 -14.86589 -14.59197 -14.16550 -14.08743 -13.77352 -13.60602 -13.53457 -12.92448 -12.81495 -12.46858 -12.24691 -12.08574 -11.70124 -11.58031 -11.30630 -11.04335 -10.76901 -10.68376 -10.56422 -10.18387 -10.11579 -9.97931 -9.90065 -9.35069 -9.17147 -8.99193 -8.92835 -8.64697 -7.06957 -6.11603 -3.12539 0.02489 0.96106 1.40132 1.82478 2.64613 2.97742 3.51312 3.54659 3.72208 3.89466 3.95695 4.32092 4.54460 4.60898 4.72220 4.86314 4.93029 5.07883 5.13464 5.24922 5.26968 5.40142 5.45302 5.55486 5.58332 5.71598 5.76848 5.83238 5.90083 5.92481 5.99779 6.06192 6.16744 6.20381 6.34622 6.49301 6.67143 6.93265 7.31204 7.79417 7.98204 8.73733 9.19509 10.06032 10.20171 11.36458 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.022973 B = 0.002966 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.534697 B = 9439.638843 C =10283.090768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.044 4.044 3 Si 1.079 2.921 4 H -0.285 1.285 5 H -0.295 1.295 6 H -0.295 1.295 7 C -0.333 4.333 8 H 0.065 0.935 9 N -0.732 5.732 10 C 0.202 3.798 11 H 0.056 0.944 12 C -0.143 4.143 13 C -0.097 4.097 14 C -0.123 4.123 15 H 0.086 0.914 16 C 0.108 3.892 17 N -0.620 5.620 18 C 0.603 3.397 19 O -0.522 6.522 20 C -0.310 4.310 21 S 0.270 5.730 22 C -0.228 4.228 23 C -0.178 4.178 24 C 0.160 3.840 25 F -0.104 7.104 26 C 0.132 3.868 27 C -0.120 4.120 28 H 0.081 0.919 29 H 0.255 0.745 30 H 0.367 0.633 31 H 0.074 0.926 32 H 0.057 0.943 33 H 0.066 0.934 34 H 0.063 0.937 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.177 0.823 38 H 0.156 0.844 39 H 0.086 0.914 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.006 -25.229 -2.155 25.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.241 4.241 3 Si 0.910 3.090 4 H -0.211 1.211 5 H -0.223 1.223 6 H -0.222 1.222 7 C -0.464 4.464 8 H 0.083 0.917 9 N -0.373 5.373 10 C 0.091 3.909 11 H 0.074 0.926 12 C -0.184 4.184 13 C -0.135 4.135 14 C -0.143 4.143 15 H 0.104 0.896 16 C -0.015 4.015 17 N -0.355 5.355 18 C 0.391 3.609 19 O -0.400 6.400 20 C -0.432 4.432 21 S 0.537 5.463 22 C -0.366 4.366 23 C -0.210 4.210 24 C 0.125 3.875 25 F -0.082 7.082 26 C 0.012 3.988 27 C -0.140 4.140 28 H 0.099 0.901 29 H 0.066 0.934 30 H 0.201 0.799 31 H 0.093 0.907 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.195 0.805 38 H 0.173 0.827 39 H 0.104 0.896 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.564 -22.925 -2.785 23.146 hybrid contribution -0.922 -2.353 1.522 2.950 sum 0.642 -25.278 -1.263 25.317 Atomic orbital electron populations 1.70887 1.06072 1.28456 1.53332 1.25762 0.97025 1.01022 1.00325 0.83260 0.74245 0.75688 0.75850 1.21062 1.22275 1.22238 1.20024 0.91996 0.85719 1.48649 0.91700 1.42501 1.04704 1.00650 1.89476 1.20021 0.93683 0.84374 0.92818 0.92575 1.23785 1.00066 0.93949 1.00563 1.21759 1.01392 0.97116 0.93246 1.22126 0.99528 0.94267 0.98390 0.89597 1.21387 0.99652 0.97577 0.82923 1.49661 1.56503 1.16484 1.12882 1.16252 0.77948 0.82793 0.83883 1.90906 1.56663 1.71074 1.21323 1.24635 1.16320 1.01286 1.00934 1.83507 1.50875 1.02341 1.09559 1.25450 1.04846 1.06224 1.00071 1.19826 1.07087 0.97734 0.96352 1.16898 0.97219 0.92694 0.80669 1.91586 1.89632 1.92363 1.34638 1.21550 0.99819 0.79980 0.97468 1.22542 1.01453 0.95864 0.94104 0.90054 0.93372 0.79903 0.90746 0.92466 0.91501 0.91837 0.90472 0.90588 0.80517 0.82687 0.89576 0.90670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.92 13.70 55.49 0.76 -28.16 16 2 C -0.04 -1.25 5.50 -17.43 -0.10 -1.34 16 3 Si 1.08 25.69 29.92 -169.99 -5.09 20.60 16 4 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.30 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.33 -9.09 9.97 -15.06 -0.15 -9.24 16 8 H 0.06 1.74 7.83 -52.49 -0.41 1.33 16 9 N -0.73 -17.52 5.12 -53.21 -0.27 -17.79 16 10 C 0.20 3.73 3.39 -67.70 -0.23 3.50 16 11 H 0.06 1.08 8.11 -51.93 -0.42 0.65 16 12 C -0.14 -2.26 6.74 -23.33 -0.16 -2.41 16 13 C -0.10 -1.14 6.72 -25.91 -0.17 -1.31 16 14 C -0.12 -1.44 2.77 -90.27 -0.25 -1.69 16 15 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 16 C 0.11 1.15 5.01 -3.86 -0.02 1.13 16 17 N -0.62 -8.76 3.43 -173.24 -0.59 -9.36 16 18 C 0.60 9.60 7.83 -13.03 -0.10 9.50 16 19 O -0.52 -10.41 16.47 5.16 0.08 -10.32 16 20 C -0.31 -3.91 6.39 -36.82 -0.24 -4.14 16 21 S 0.27 2.09 18.52 -107.50 -1.99 0.10 16 22 C -0.23 -1.49 10.91 29.15 0.32 -1.17 16 23 C -0.18 -1.51 10.15 -41.35 -0.42 -1.93 16 24 C 0.16 1.97 7.48 -40.25 -0.30 1.67 16 25 F -0.10 -1.53 16.43 2.25 0.04 -1.50 16 26 C 0.13 2.06 6.81 -3.31 -0.02 2.03 16 27 C -0.12 -1.84 2.40 -90.33 -0.22 -2.06 16 28 H 0.08 1.35 7.92 -51.93 -0.41 0.94 16 29 H 0.26 7.70 6.77 -40.82 -0.28 7.43 16 30 H 0.37 9.21 6.47 -40.82 -0.26 8.94 16 31 H 0.07 1.36 7.98 -51.93 -0.41 0.95 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.08 0.74 7.48 -51.93 -0.39 0.36 16 36 H 0.08 0.65 6.45 -50.44 -0.33 0.32 16 37 H 0.18 0.59 8.06 -52.49 -0.42 0.16 16 38 H 0.16 0.97 8.06 -52.49 -0.42 0.54 16 39 H 0.09 1.52 8.09 -51.93 -0.42 1.10 16 40 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 LS Contribution 340.90 15.07 5.14 5.14 Total: -1.00 -33.91 340.90 -9.07 -42.98 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -5.09 Total: 5.79 kcal Atomic # 6 Polarization: -5.42 SS G_CDS: -2.06 Total: -7.48 kcal Atomic # 7 Polarization: -55.20 SS G_CDS: -0.11 Total: -55.31 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: 0.08 Total: -10.32 kcal Atomic # 9 Polarization: -1.53 SS G_CDS: 0.04 Total: -1.50 kcal Atomic # 14 Polarization: 25.69 SS G_CDS: -5.09 Total: 20.60 kcal Atomic # 16 Polarization: 2.09 SS G_CDS: -1.99 Total: 0.10 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -33.91 -9.07 -42.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026256583.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.415 kcal (2) G-P(sol) polarization free energy of solvation -33.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds