Wall clock time and date at job start Tue Mar 31 2020 13:38:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 119.99846 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99598 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99591 * 3 2 1 7 7 C 1.38811 * 120.00460 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00021 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99586 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99727 * 179.97438 * 9 7 2 11 11 H 1.08997 * 110.44121 * 36.10997 * 10 9 7 12 12 C 1.55941 * 110.49660 * 273.54816 * 10 9 7 13 13 C 1.56400 * 105.78664 * 233.79183 * 12 10 9 14 14 C 1.50996 * 101.59468 * 334.97784 * 13 12 10 15 15 H 1.08994 * 110.04756 * 291.26031 * 14 13 12 16 16 C 1.50345 * 125.58192 * 156.03999 * 14 13 12 17 17 N 1.49216 * 104.85963 * 215.65979 * 16 14 13 18 18 C 1.34773 * 126.06136 * 187.04692 * 17 16 14 19 19 O 1.21735 * 119.99969 * 179.97438 * 18 17 16 20 20 C 1.46287 * 119.99606 * 359.97350 * 18 17 16 21 21 S 1.75828 * 125.46825 * 0.02895 * 20 18 17 22 22 C 1.70599 * 91.60671 * 179.97438 * 21 20 18 23 23 C 1.33733 * 111.04420 * 359.97438 * 22 21 20 24 24 C 1.36927 * 125.46493 * 179.72024 * 20 18 17 25 25 F 1.35108 * 123.40394 * 0.02562 * 24 20 18 26 26 C 1.49701 * 107.88022 * 7.06927 * 17 16 14 27 27 C 1.50302 * 110.49068 * 158.80951 * 10 9 7 28 28 H 1.08996 * 110.00360 * 38.17969 * 27 10 9 29 29 H 0.97001 * 119.99952 * 179.97438 * 1 2 3 30 30 H 0.96998 * 120.00177 * 0.02562 * 9 7 2 31 31 H 1.09001 * 110.18531 * 352.87103 * 12 10 9 32 32 H 1.08996 * 110.18602 * 114.63607 * 12 10 9 33 33 H 1.09001 * 111.00400 * 93.05564 * 13 12 10 34 34 H 1.09001 * 111.00346 * 216.90129 * 13 12 10 35 35 H 1.08995 * 110.36047 * 334.50886 * 16 14 13 36 36 H 1.09000 * 110.35716 * 96.70745 * 16 14 13 37 37 H 1.08001 * 124.47811 * 180.02562 * 22 21 20 38 38 H 1.08000 * 122.45436 * 180.02562 * 23 22 21 39 39 H 1.09000 * 110.84442 * 143.33104 * 26 17 16 40 40 H 1.08997 * 110.84394 * 266.93928 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 1.2851 2.7465 -0.0006 5 1 3.1040 1.6964 -1.2125 6 1 3.1038 1.6966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0582 -3.6567 0.0005 11 1 2.9631 -3.5738 0.6024 12 6 2.4095 -4.0844 -1.4574 13 6 1.8555 -5.5379 -1.6196 14 6 1.8464 -6.0207 -0.1889 15 1 2.8680 -6.1398 0.1717 16 6 0.9752 -7.1167 0.3590 17 7 0.6369 -6.6799 1.7451 18 6 -0.0177 -7.4101 2.6695 19 8 -0.2357 -6.9423 3.7720 20 6 -0.4662 -8.7649 2.3479 21 16 -0.2287 -9.5797 0.8080 22 6 -1.0276 -10.9783 1.3702 23 6 -1.4371 -10.8223 2.6337 24 6 -1.1331 -9.6042 3.1998 25 9 -1.4625 -9.2699 4.4668 26 6 1.1530 -5.2864 1.9267 27 6 1.1845 -4.7688 0.5095 28 1 0.1649 -4.6374 0.1473 29 1 -0.4850 -0.8401 -0.0004 30 1 0.3556 -2.3881 -0.0002 31 1 1.9281 -3.4164 -2.1716 32 1 3.4897 -4.0740 -1.6024 33 1 0.8478 -5.5279 -2.0349 34 1 2.5227 -6.1442 -2.2322 35 1 0.0695 -7.2160 -0.2391 36 1 1.5207 -8.0602 0.3794 37 1 -1.1816 -11.8719 0.7835 38 1 -1.9641 -11.5962 3.1719 39 1 0.4712 -4.6971 2.5398 40 1 2.1539 -5.2967 2.3581 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026256583.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:46 Heat of formation + Delta-G solvation = -32.155519 kcal Electronic energy + Delta-G solvation = -25021.983528 eV Core-core repulsion = 21263.935471 eV Total energy + Delta-G solvation = -3758.048058 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.105 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.03646 -41.86729 -40.04828 -38.28195 -37.04914 -35.39183 -32.62304 -31.98766 -30.09325 -29.83803 -26.94868 -26.07480 -25.06793 -24.34937 -22.01678 -21.57428 -20.79604 -20.51172 -19.35641 -19.16519 -18.19466 -17.57885 -17.25551 -16.96430 -16.45946 -16.26116 -15.94494 -15.82147 -15.42389 -15.30419 -14.99321 -14.92954 -14.80323 -14.21079 -13.80143 -13.53749 -13.28239 -13.16524 -12.99530 -12.83108 -12.67319 -12.45133 -12.41626 -11.93545 -11.89460 -11.73184 -11.48470 -11.36357 -11.32717 -10.99691 -10.89050 -10.21813 -9.90826 -9.44600 -9.10017 -8.37617 -5.31413 -0.76270 0.24121 0.76001 1.09274 1.53875 1.58033 1.67941 1.83759 1.87340 2.71736 2.80429 3.21538 3.34053 3.41629 3.54810 3.73594 3.89042 3.90202 4.04869 4.14972 4.28990 4.33026 4.36403 4.42182 4.51429 4.57682 4.66030 4.67187 4.78319 4.81232 4.84561 4.95286 5.02796 5.16683 5.17872 5.27444 5.45075 5.49114 5.65530 6.19691 6.50034 6.81664 7.10557 8.00646 8.12782 9.14183 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.022973 B = 0.002966 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.534697 B = 9439.638843 C =10283.090768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.979 5.979 2 C -0.108 4.108 3 Si 1.125 2.875 4 H -0.296 1.296 5 H -0.274 1.274 6 H -0.280 1.280 7 C -0.325 4.325 8 H 0.069 0.931 9 N -0.747 5.747 10 C 0.191 3.809 11 H 0.047 0.953 12 C -0.137 4.137 13 C -0.081 4.081 14 C -0.099 4.099 15 H 0.098 0.902 16 C 0.106 3.894 17 N -0.619 5.619 18 C 0.595 3.405 19 O -0.583 6.583 20 C -0.359 4.359 21 S 0.340 5.660 22 C -0.198 4.198 23 C -0.192 4.192 24 C 0.139 3.861 25 F -0.130 7.130 26 C 0.132 3.868 27 C -0.123 4.123 28 H 0.066 0.934 29 H 0.242 0.758 30 H 0.357 0.643 31 H 0.045 0.955 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.102 0.898 35 H 0.095 0.905 36 H 0.110 0.890 37 H 0.223 0.777 38 H 0.177 0.823 39 H 0.049 0.951 40 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.513 -28.923 -4.880 29.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.627 5.627 2 C -0.299 4.299 3 Si 0.951 3.049 4 H -0.223 1.223 5 H -0.200 1.200 6 H -0.207 1.207 7 C -0.456 4.456 8 H 0.087 0.913 9 N -0.389 5.389 10 C 0.083 3.917 11 H 0.065 0.935 12 C -0.177 4.177 13 C -0.119 4.119 14 C -0.118 4.118 15 H 0.117 0.883 16 C -0.015 4.015 17 N -0.352 5.352 18 C 0.386 3.614 19 O -0.466 6.466 20 C -0.480 4.480 21 S 0.608 5.392 22 C -0.336 4.336 23 C -0.222 4.222 24 C 0.103 3.897 25 F -0.109 7.109 26 C 0.011 3.989 27 C -0.143 4.143 28 H 0.084 0.916 29 H 0.053 0.947 30 H 0.189 0.811 31 H 0.064 0.936 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.121 0.879 35 H 0.113 0.887 36 H 0.128 0.872 37 H 0.239 0.761 38 H 0.194 0.806 39 H 0.068 0.932 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 3.127 -26.691 -5.564 27.443 hybrid contribution -1.352 -1.331 2.331 3.006 sum 1.775 -28.022 -3.233 28.264 Atomic orbital electron populations 1.70997 1.07293 1.27767 1.56664 1.27146 0.97081 1.04710 1.00943 0.82655 0.73381 0.71748 0.77161 1.22255 1.20020 1.20653 1.20374 0.92327 0.86978 1.45934 0.91344 1.42732 1.04434 1.01897 1.89815 1.20322 0.93334 0.83129 0.94964 0.93472 1.23574 1.00812 0.96333 0.96987 1.21688 1.02370 0.94303 0.93582 1.22112 0.99968 0.91961 0.97789 0.88335 1.21655 1.00697 0.98406 0.80764 1.49669 1.55886 1.15473 1.14182 1.16819 0.77292 0.84095 0.83239 1.90853 1.59080 1.72798 1.23844 1.24546 1.18649 1.00266 1.04512 1.83055 1.49479 1.01235 1.05449 1.26012 1.01585 1.06842 0.99163 1.19967 1.08203 0.96698 0.97333 1.17580 0.97797 0.94409 0.79903 1.91508 1.90002 1.92811 1.36590 1.21385 0.99192 0.81103 0.97227 1.22291 1.00439 0.97064 0.94490 0.91558 0.94733 0.81113 0.93611 0.91153 0.91060 0.87914 0.88703 0.87240 0.76078 0.80598 0.93212 0.90143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.37 13.70 21.65 0.30 -62.07 16 2 C -0.11 -6.32 5.50 84.86 0.47 -5.85 16 3 Si 1.13 52.48 29.92 68.60 2.05 54.53 16 4 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 5 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 6 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 7 C -0.32 -18.11 9.97 84.03 0.84 -17.27 16 8 H 0.07 3.69 7.83 -2.91 -0.02 3.67 16 9 N -0.75 -37.16 5.12 -322.24 -1.65 -38.80 16 10 C 0.19 7.11 3.39 45.14 0.15 7.27 16 11 H 0.05 1.82 8.11 -2.39 -0.02 1.80 16 12 C -0.14 -4.10 6.74 32.80 0.22 -3.88 16 13 C -0.08 -1.60 6.72 31.13 0.21 -1.39 16 14 C -0.10 -2.00 2.77 -10.56 -0.03 -2.03 16 15 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 16 C 0.11 1.92 5.01 84.99 0.43 2.34 16 17 N -0.62 -17.42 3.43 -820.22 -2.81 -20.23 16 18 C 0.59 19.60 7.83 86.34 0.68 20.28 16 19 O -0.58 -25.21 16.47 -4.46 -0.07 -25.28 16 20 C -0.36 -8.75 6.39 24.06 0.15 -8.60 16 21 S 0.34 3.78 18.52 -56.49 -1.05 2.73 16 22 C -0.20 -1.57 10.91 66.80 0.73 -0.84 16 23 C -0.19 -2.71 10.15 21.12 0.21 -2.50 16 24 C 0.14 3.40 7.48 21.84 0.16 3.56 16 25 F -0.13 -4.10 16.43 44.97 0.74 -3.36 16 26 C 0.13 4.32 6.81 85.08 0.58 4.90 16 27 C -0.12 -3.80 2.40 -10.61 -0.03 -3.83 16 28 H 0.07 2.27 7.92 -2.39 -0.02 2.25 16 29 H 0.24 15.44 6.77 -92.71 -0.63 14.81 16 30 H 0.36 18.95 6.47 -92.71 -0.60 18.35 16 31 H 0.04 1.65 7.98 -2.39 -0.02 1.63 16 32 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.09 1.44 7.48 -2.39 -0.02 1.42 16 36 H 0.11 1.31 6.45 -3.33 -0.02 1.29 16 37 H 0.22 -0.17 8.06 -2.91 -0.02 -0.19 16 38 H 0.18 1.66 8.06 -2.91 -0.02 1.63 16 39 H 0.05 1.95 8.09 -2.39 -0.02 1.93 16 40 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 Total: -1.00 -81.82 340.90 2.89 -78.93 By element: Atomic # 1 Polarization: 20.81 SS G_CDS: 0.61 Total: 21.42 kcal Atomic # 6 Polarization: -12.63 SS G_CDS: 4.77 Total: -7.86 kcal Atomic # 7 Polarization: -116.95 SS G_CDS: -4.16 Total: -121.11 kcal Atomic # 8 Polarization: -25.21 SS G_CDS: -0.07 Total: -25.28 kcal Atomic # 9 Polarization: -4.10 SS G_CDS: 0.74 Total: -3.36 kcal Atomic # 14 Polarization: 52.48 SS G_CDS: 2.05 Total: 54.53 kcal Atomic # 16 Polarization: 3.78 SS G_CDS: -1.05 Total: 2.73 kcal Total: -81.82 2.89 -78.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026256583.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.771 kcal (2) G-P(sol) polarization free energy of solvation -81.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds