Wall clock time and date at job start Tue Mar 31 2020 13:38:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 120.00337 * 2 1 4 4 H 1.48502 * 109.47194 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47071 * 300.00040 * 3 2 1 6 6 H 1.48498 * 109.47363 * 60.00174 * 3 2 1 7 7 C 1.38823 * 119.99492 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99789 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00030 * 359.97438 * 7 2 1 10 10 C 1.46501 * 119.99558 * 179.97438 * 9 7 2 11 11 H 1.08993 * 110.41334 * 32.53208 * 10 9 7 12 12 C 1.54842 * 110.45517 * 269.92441 * 10 9 7 13 13 C 1.55146 * 102.72563 * 203.16079 * 12 10 9 14 14 C 1.54147 * 104.43459 * 38.10259 * 13 12 10 15 15 H 1.08994 * 112.65676 * 99.52866 * 14 13 12 16 16 C 1.54464 * 108.79745 * 224.25161 * 14 13 12 17 17 N 1.48337 * 104.31129 * 138.54602 * 16 14 13 18 18 C 1.34779 * 128.19990 * 138.24572 * 17 16 14 19 19 O 1.21742 * 119.99928 * 176.98896 * 18 17 16 20 20 C 1.46288 * 119.99840 * 356.98895 * 18 17 16 21 21 S 1.75828 * 125.46479 * 7.65946 * 20 18 17 22 22 C 1.70600 * 91.60660 * 179.97438 * 21 20 18 23 23 C 1.33739 * 111.04063 * 359.97438 * 22 21 20 24 24 C 1.36925 * 125.46384 * 187.34947 * 20 18 17 25 25 F 1.35103 * 123.40625 * 359.97438 * 24 20 18 26 26 C 1.48336 * 103.60162 * 318.23059 * 17 16 14 27 27 C 1.54143 * 110.45365 * 155.00363 * 10 9 7 28 28 H 1.09001 * 112.65871 * 19.39082 * 27 10 9 29 29 H 0.97002 * 119.99493 * 359.97438 * 1 2 3 30 30 H 0.96993 * 120.00163 * 0.02562 * 9 7 2 31 31 H 1.08995 * 110.75775 * 321.36454 * 12 10 9 32 32 H 1.08993 * 110.75743 * 84.75108 * 12 10 9 33 33 H 1.09000 * 110.23833 * 279.44131 * 13 12 10 34 34 H 1.08997 * 110.59067 * 156.93170 * 13 12 10 35 35 H 1.08996 * 110.46854 * 19.83355 * 16 14 13 36 36 H 1.09007 * 110.45875 * 257.25339 * 16 14 13 37 37 H 1.07997 * 124.48265 * 180.02562 * 22 21 20 38 38 H 1.07997 * 122.45333 * 179.97438 * 23 22 21 39 39 H 1.09003 * 110.46882 * 160.47840 * 26 17 16 40 40 H 1.09005 * 110.46967 * 282.92954 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3462 -0.0006 5 1 1.8916 2.3963 -1.2125 6 1 1.8917 2.3964 1.2125 7 6 2.0102 -1.2023 -0.0005 8 1 3.0902 -1.2024 -0.0010 9 7 1.3254 -2.3882 -0.0005 10 6 2.0579 -3.6569 -0.0017 11 1 2.9943 -3.5558 0.5470 12 6 2.3257 -4.1258 -1.4529 13 6 2.5221 -5.6558 -1.2869 14 6 1.4926 -6.0612 -0.2136 15 1 0.5881 -6.4933 -0.6414 16 6 2.1710 -7.0196 0.7900 17 7 1.6735 -6.5753 2.1149 18 6 1.2747 -7.3361 3.1535 19 8 0.9422 -6.8112 4.2004 20 6 1.2412 -8.7928 3.0227 21 16 1.8644 -9.7090 1.6575 22 6 1.4036 -11.1858 2.3767 23 6 0.8224 -10.9811 3.5636 24 6 0.7250 -9.6617 3.9464 25 9 0.1738 -9.2648 5.1143 26 6 1.7193 -5.0953 2.0264 27 6 1.1941 -4.7781 0.6088 28 1 0.1317 -4.5344 0.6134 29 1 -0.4849 0.8401 0.0004 30 1 0.3555 -2.3881 -0.0005 31 1 1.4679 -3.9151 -2.0914 32 1 3.2277 -3.6597 -1.8492 33 1 3.5343 -5.8711 -0.9446 34 1 2.3181 -6.1725 -2.2247 35 1 3.2552 -6.9214 0.7375 36 1 1.8708 -8.0494 0.5959 37 1 1.5612 -12.1576 1.9326 38 1 0.4588 -11.7912 4.1783 39 1 1.0727 -4.6480 2.7813 40 1 2.7426 -4.7379 2.1425 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026256584.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:50 Heat of formation + Delta-G solvation = -21.898910 kcal Electronic energy + Delta-G solvation = -25011.463665 eV Core-core repulsion = 21253.860368 eV Total energy + Delta-G solvation = -3757.603298 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.105 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.03582 -40.35312 -38.65424 -37.40584 -35.24131 -33.38269 -31.11550 -30.71809 -28.98122 -28.49563 -25.52278 -25.05497 -23.70775 -22.90550 -21.19634 -20.07508 -19.76037 -19.10000 -18.29762 -17.19312 -16.81683 -16.70749 -16.11248 -15.69310 -15.23480 -15.12467 -14.71428 -14.47221 -14.14804 -14.08820 -13.81059 -13.29504 -13.09171 -12.86898 -12.66571 -12.44328 -12.30037 -12.02143 -11.69884 -11.34664 -11.22069 -10.85666 -10.80485 -10.65695 -10.44726 -10.29406 -10.21322 -10.02615 -9.94696 -9.68260 -9.32822 -8.91760 -8.88249 -8.68937 -6.97231 -5.78585 -3.07533 0.05270 0.97065 1.40374 1.86078 2.76960 3.00218 3.42644 3.48320 3.50616 3.95610 4.23176 4.43846 4.56379 4.58614 4.76875 4.80305 4.91233 5.14005 5.26282 5.32320 5.35240 5.43681 5.53756 5.56291 5.67484 5.77862 5.86262 5.89767 5.95237 5.99494 6.11002 6.18579 6.25075 6.35699 6.50332 6.60064 6.75853 6.99779 7.43607 7.69159 8.02322 8.39715 9.51155 10.08150 10.41986 11.43926 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.023667 B = 0.002972 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.783889 B = 9417.620603 C =10284.162252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.013 4.013 3 Si 0.905 3.095 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.240 4.240 8 H 0.071 0.929 9 N -0.720 5.720 10 C 0.184 3.816 11 H 0.059 0.941 12 C -0.142 4.142 13 C -0.117 4.117 14 C -0.099 4.099 15 H 0.088 0.912 16 C 0.103 3.897 17 N -0.622 5.622 18 C 0.608 3.392 19 O -0.521 6.521 20 C -0.310 4.310 21 S 0.270 5.730 22 C -0.233 4.233 23 C -0.179 4.179 24 C 0.162 3.838 25 F -0.104 7.104 26 C 0.117 3.883 27 C -0.107 4.107 28 H 0.091 0.909 29 H 0.255 0.745 30 H 0.384 0.616 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.061 0.939 35 H 0.087 0.913 36 H 0.069 0.931 37 H 0.176 0.824 38 H 0.154 0.846 39 H 0.086 0.914 40 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.968 -25.399 -0.294 25.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.209 4.209 3 Si 0.737 3.263 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.371 4.371 8 H 0.089 0.911 9 N -0.360 5.360 10 C 0.073 3.927 11 H 0.076 0.924 12 C -0.183 4.183 13 C -0.155 4.155 14 C -0.119 4.119 15 H 0.107 0.893 16 C -0.021 4.021 17 N -0.356 5.356 18 C 0.396 3.604 19 O -0.399 6.399 20 C -0.432 4.432 21 S 0.537 5.463 22 C -0.370 4.370 23 C -0.211 4.211 24 C 0.127 3.873 25 F -0.082 7.082 26 C -0.004 4.004 27 C -0.127 4.127 28 H 0.110 0.890 29 H 0.065 0.935 30 H 0.219 0.781 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.105 0.895 36 H 0.086 0.914 37 H 0.193 0.807 38 H 0.172 0.828 39 H 0.104 0.896 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 5.563 -24.656 -0.889 25.291 hybrid contribution -0.766 0.323 1.497 1.712 sum 4.796 -24.332 0.608 24.808 Atomic orbital electron populations 1.69670 1.05116 1.25595 1.57547 1.24749 0.95495 0.97722 1.02899 0.86143 0.78796 0.84218 0.77177 1.20549 1.21914 1.21874 1.19273 0.90997 0.84069 1.42791 0.91103 1.42450 1.05741 0.99694 1.88125 1.21126 0.93764 0.85164 0.92625 0.92355 1.23282 1.01606 0.92602 1.00791 1.22456 0.97606 0.98003 0.97444 1.22771 0.98837 0.95071 0.95207 0.89343 1.23037 0.99453 0.97103 0.82512 1.49042 1.64188 1.08729 1.13591 1.16212 0.77695 0.83610 0.82875 1.90907 1.48954 1.73080 1.26965 1.24611 1.17568 0.98156 1.02816 1.83456 1.54828 0.92101 1.15943 1.25648 1.04638 1.06694 1.00021 1.19816 1.06609 0.95645 0.98984 1.16896 0.96036 0.91441 0.82929 1.91584 1.81976 1.91190 1.43488 1.22684 1.02113 0.77295 0.98304 1.23150 1.01578 0.95007 0.92999 0.89049 0.93529 0.78145 0.91484 0.92049 0.91622 0.91977 0.89519 0.91412 0.80669 0.82797 0.89583 0.90246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.75 13.06 55.49 0.72 -27.03 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 3 Si 0.91 22.12 29.55 -169.99 -5.02 17.10 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 7 C -0.24 -6.43 9.96 -15.06 -0.15 -6.58 16 8 H 0.07 1.85 7.83 -52.49 -0.41 1.43 16 9 N -0.72 -17.13 5.20 -51.91 -0.27 -17.40 16 10 C 0.18 3.32 3.06 -66.36 -0.20 3.12 16 11 H 0.06 1.07 7.12 -51.93 -0.37 0.70 16 12 C -0.14 -2.22 6.59 -24.62 -0.16 -2.38 16 13 C -0.12 -1.31 6.37 -25.00 -0.16 -1.47 16 14 C -0.10 -1.16 3.97 -88.04 -0.35 -1.51 16 15 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 16 C 0.10 1.08 5.93 -2.26 -0.01 1.07 16 17 N -0.62 -8.73 3.31 -170.57 -0.56 -9.29 16 18 C 0.61 9.67 7.87 -13.02 -0.10 9.56 16 19 O -0.52 -10.42 16.46 5.15 0.08 -10.33 16 20 C -0.31 -3.91 6.39 -36.82 -0.24 -4.15 16 21 S 0.27 2.09 18.71 -107.50 -2.01 0.08 16 22 C -0.23 -1.54 10.91 29.15 0.32 -1.22 16 23 C -0.18 -1.53 10.15 -41.35 -0.42 -1.95 16 24 C 0.16 2.00 7.47 -40.25 -0.30 1.70 16 25 F -0.10 -1.54 16.45 2.25 0.04 -1.50 16 26 C 0.12 1.82 6.57 -2.26 -0.01 1.80 16 27 C -0.11 -1.64 3.64 -88.04 -0.32 -1.96 16 28 H 0.09 1.55 7.83 -51.93 -0.41 1.14 16 29 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 30 H 0.38 9.85 7.63 -40.82 -0.31 9.54 16 31 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 32 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.07 0.65 7.18 -51.93 -0.37 0.28 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.09 0.79 7.20 -51.93 -0.37 0.41 16 36 H 0.07 0.59 3.95 -23.39 -0.09 0.49 16 37 H 0.18 0.60 8.06 -52.49 -0.42 0.18 16 38 H 0.15 0.98 8.06 -52.49 -0.42 0.55 16 39 H 0.09 1.52 7.90 -51.93 -0.41 1.11 16 40 H 0.08 1.19 7.20 -51.93 -0.37 0.82 16 LS Contribution 339.28 15.07 5.11 5.11 Total: -1.00 -32.88 339.28 -8.91 -41.79 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -4.79 Total: 5.89 kcal Atomic # 6 Polarization: -2.21 SS G_CDS: -2.21 Total: -4.42 kcal Atomic # 7 Polarization: -53.61 SS G_CDS: -0.11 Total: -53.72 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: 0.08 Total: -10.33 kcal Atomic # 9 Polarization: -1.54 SS G_CDS: 0.04 Total: -1.50 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Atomic # 16 Polarization: 2.09 SS G_CDS: -2.01 Total: 0.08 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.88 -8.91 -41.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026256584.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.890 kcal (2) G-P(sol) polarization free energy of solvation -32.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds