Wall clock time and date at job start Tue Mar 31 2020 13:38:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 120.00337 * 2 1 4 4 H 1.48502 * 109.47194 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47071 * 300.00040 * 3 2 1 6 6 H 1.48498 * 109.47363 * 60.00174 * 3 2 1 7 7 C 1.38823 * 119.99492 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99789 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00030 * 359.97438 * 7 2 1 10 10 C 1.46501 * 119.99558 * 179.97438 * 9 7 2 11 11 H 1.08993 * 110.41334 * 32.53208 * 10 9 7 12 12 C 1.54842 * 110.45517 * 269.92441 * 10 9 7 13 13 C 1.55146 * 102.72563 * 203.16079 * 12 10 9 14 14 C 1.54147 * 104.43459 * 38.10259 * 13 12 10 15 15 H 1.08994 * 112.65676 * 99.52866 * 14 13 12 16 16 C 1.54464 * 108.79745 * 224.25161 * 14 13 12 17 17 N 1.48337 * 104.31129 * 138.54602 * 16 14 13 18 18 C 1.34779 * 128.19990 * 138.24572 * 17 16 14 19 19 O 1.21742 * 119.99928 * 176.98896 * 18 17 16 20 20 C 1.46288 * 119.99840 * 356.98895 * 18 17 16 21 21 S 1.75828 * 125.46479 * 7.65946 * 20 18 17 22 22 C 1.70600 * 91.60660 * 179.97438 * 21 20 18 23 23 C 1.33739 * 111.04063 * 359.97438 * 22 21 20 24 24 C 1.36925 * 125.46384 * 187.34947 * 20 18 17 25 25 F 1.35103 * 123.40625 * 359.97438 * 24 20 18 26 26 C 1.48336 * 103.60162 * 318.23059 * 17 16 14 27 27 C 1.54143 * 110.45365 * 155.00363 * 10 9 7 28 28 H 1.09001 * 112.65871 * 19.39082 * 27 10 9 29 29 H 0.97002 * 119.99493 * 359.97438 * 1 2 3 30 30 H 0.96993 * 120.00163 * 0.02562 * 9 7 2 31 31 H 1.08995 * 110.75775 * 321.36454 * 12 10 9 32 32 H 1.08993 * 110.75743 * 84.75108 * 12 10 9 33 33 H 1.09000 * 110.23833 * 279.44131 * 13 12 10 34 34 H 1.08997 * 110.59067 * 156.93170 * 13 12 10 35 35 H 1.08996 * 110.46854 * 19.83355 * 16 14 13 36 36 H 1.09007 * 110.45875 * 257.25339 * 16 14 13 37 37 H 1.07997 * 124.48265 * 180.02562 * 22 21 20 38 38 H 1.07997 * 122.45333 * 179.97438 * 23 22 21 39 39 H 1.09003 * 110.46882 * 160.47840 * 26 17 16 40 40 H 1.09005 * 110.46967 * 282.92954 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3462 -0.0006 5 1 1.8916 2.3963 -1.2125 6 1 1.8917 2.3964 1.2125 7 6 2.0102 -1.2023 -0.0005 8 1 3.0902 -1.2024 -0.0010 9 7 1.3254 -2.3882 -0.0005 10 6 2.0579 -3.6569 -0.0017 11 1 2.9943 -3.5558 0.5470 12 6 2.3257 -4.1258 -1.4529 13 6 2.5221 -5.6558 -1.2869 14 6 1.4926 -6.0612 -0.2136 15 1 0.5881 -6.4933 -0.6414 16 6 2.1710 -7.0196 0.7900 17 7 1.6735 -6.5753 2.1149 18 6 1.2747 -7.3361 3.1535 19 8 0.9422 -6.8112 4.2004 20 6 1.2412 -8.7928 3.0227 21 16 1.8644 -9.7090 1.6575 22 6 1.4036 -11.1858 2.3767 23 6 0.8224 -10.9811 3.5636 24 6 0.7250 -9.6617 3.9464 25 9 0.1738 -9.2648 5.1143 26 6 1.7193 -5.0953 2.0264 27 6 1.1941 -4.7781 0.6088 28 1 0.1317 -4.5344 0.6134 29 1 -0.4849 0.8401 0.0004 30 1 0.3555 -2.3881 -0.0005 31 1 1.4679 -3.9151 -2.0914 32 1 3.2277 -3.6597 -1.8492 33 1 3.5343 -5.8711 -0.9446 34 1 2.3181 -6.1725 -2.2247 35 1 3.2552 -6.9214 0.7375 36 1 1.8708 -8.0494 0.5959 37 1 1.5612 -12.1576 1.9326 38 1 0.4588 -11.7912 4.1783 39 1 1.0727 -4.6480 2.7813 40 1 2.7426 -4.7379 2.1425 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026256584.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:49 Heat of formation + Delta-G solvation = -43.758588 kcal Electronic energy + Delta-G solvation = -25012.411572 eV Core-core repulsion = 21253.860368 eV Total energy + Delta-G solvation = -3758.551204 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.105 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.02449 -41.51877 -39.81463 -38.22904 -36.72488 -35.02760 -32.72234 -31.85038 -30.14551 -29.74370 -26.81452 -26.19309 -24.79687 -24.51052 -22.15477 -21.32378 -20.68164 -20.29536 -19.34712 -18.97232 -17.86217 -17.74548 -17.17381 -17.01433 -16.46872 -16.16132 -15.94218 -15.57529 -15.48037 -15.14115 -14.85984 -14.82144 -14.53986 -13.95730 -13.74429 -13.60372 -13.38996 -13.17356 -12.94777 -12.91978 -12.59705 -12.39400 -12.26469 -12.05929 -11.82388 -11.65969 -11.53670 -11.45185 -11.31250 -11.15203 -10.86636 -10.20697 -9.84522 -9.46406 -8.95319 -7.92700 -5.20031 -0.74033 0.24605 0.74242 1.12611 1.47352 1.48327 1.57730 1.67562 1.89972 2.57384 3.22008 3.23344 3.39005 3.42133 3.67625 3.75997 3.92174 4.04386 4.12167 4.27170 4.36296 4.42113 4.44202 4.55692 4.62504 4.67341 4.71763 4.78481 4.85866 4.86732 5.01253 5.08119 5.11191 5.19139 5.30201 5.42300 5.50150 5.53857 5.66507 6.30090 6.32748 6.85896 7.35656 8.13802 8.34503 9.31278 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.023667 B = 0.002972 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.783889 B = 9417.620603 C =10284.162252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.080 4.080 3 Si 0.968 3.032 4 H -0.263 1.263 5 H -0.295 1.295 6 H -0.299 1.299 7 C -0.231 4.231 8 H 0.079 0.921 9 N -0.736 5.736 10 C 0.175 3.825 11 H 0.057 0.943 12 C -0.138 4.138 13 C -0.100 4.100 14 C -0.089 4.089 15 H 0.103 0.897 16 C 0.104 3.896 17 N -0.620 5.620 18 C 0.599 3.401 19 O -0.584 6.584 20 C -0.359 4.359 21 S 0.340 5.660 22 C -0.202 4.202 23 C -0.193 4.193 24 C 0.141 3.859 25 F -0.131 7.131 26 C 0.119 3.881 27 C -0.103 4.103 28 H 0.066 0.934 29 H 0.248 0.752 30 H 0.370 0.630 31 H 0.048 0.952 32 H 0.058 0.942 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.113 0.887 36 H 0.093 0.907 37 H 0.221 0.779 38 H 0.175 0.825 39 H 0.049 0.951 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.371 -29.290 -2.644 30.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.272 4.272 3 Si 0.798 3.202 4 H -0.187 1.187 5 H -0.222 1.222 6 H -0.227 1.227 7 C -0.363 4.363 8 H 0.096 0.904 9 N -0.375 5.375 10 C 0.066 3.934 11 H 0.075 0.925 12 C -0.178 4.178 13 C -0.138 4.138 14 C -0.109 4.109 15 H 0.121 0.879 16 C -0.019 4.019 17 N -0.352 5.352 18 C 0.390 3.610 19 O -0.466 6.466 20 C -0.479 4.479 21 S 0.608 5.392 22 C -0.340 4.340 23 C -0.223 4.223 24 C 0.105 3.895 25 F -0.109 7.109 26 C -0.003 4.003 27 C -0.123 4.123 28 H 0.085 0.915 29 H 0.057 0.943 30 H 0.202 0.798 31 H 0.066 0.934 32 H 0.077 0.923 33 H 0.109 0.891 34 H 0.110 0.890 35 H 0.131 0.869 36 H 0.110 0.890 37 H 0.238 0.762 38 H 0.193 0.807 39 H 0.068 0.932 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 8.033 -28.607 -3.292 29.895 hybrid contribution -1.475 1.395 2.198 2.992 sum 6.559 -27.212 -1.094 28.013 Atomic orbital electron populations 1.69829 1.06653 1.25735 1.60113 1.25532 0.96296 1.01044 1.04316 0.85135 0.78457 0.80211 0.76381 1.18734 1.22199 1.22690 1.19674 0.91459 0.85179 1.40012 0.90357 1.42682 1.05320 1.01129 1.88342 1.21425 0.93481 0.83678 0.94792 0.92490 1.23095 1.00624 0.96300 0.97788 1.22417 0.98653 0.94131 0.98599 1.22772 0.99982 0.93044 0.95117 0.87917 1.23304 1.00745 0.98084 0.79732 1.49064 1.63676 1.07792 1.14698 1.16787 0.76679 0.85249 0.82273 1.90855 1.51718 1.74662 1.29351 1.24527 1.20598 0.96633 1.06170 1.82926 1.52578 0.91082 1.12644 1.26185 1.01229 1.08046 0.98517 1.19958 1.07773 0.94226 1.00321 1.17578 0.96366 0.93314 0.82256 1.91506 1.82575 1.91697 1.45146 1.22513 1.01516 0.78837 0.97455 1.22957 0.99575 0.96295 0.93513 0.91506 0.94274 0.79800 0.93355 0.92321 0.89117 0.88976 0.86902 0.88967 0.76229 0.80717 0.93224 0.89653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.21 13.06 21.66 0.28 -59.93 16 2 C -0.08 -4.60 5.50 84.86 0.47 -4.14 16 3 Si 0.97 46.43 29.55 68.60 2.03 48.45 16 4 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 5 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 6 H -0.30 -14.59 7.11 99.48 0.71 -13.88 16 7 C -0.23 -12.60 9.96 84.04 0.84 -11.77 16 8 H 0.08 4.07 7.83 -2.91 -0.02 4.04 16 9 N -0.74 -36.17 5.20 -318.14 -1.65 -37.82 16 10 C 0.17 6.32 3.06 46.01 0.14 6.46 16 11 H 0.06 2.07 7.12 -2.39 -0.02 2.05 16 12 C -0.14 -4.07 6.59 31.96 0.21 -3.86 16 13 C -0.10 -1.81 6.37 31.72 0.20 -1.61 16 14 C -0.09 -1.83 3.97 -9.12 -0.04 -1.87 16 15 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 16 C 0.10 1.81 5.93 86.52 0.51 2.33 16 17 N -0.62 -17.24 3.31 -811.75 -2.69 -19.93 16 18 C 0.60 19.68 7.87 86.34 0.68 20.36 16 19 O -0.58 -25.24 16.46 -4.48 -0.07 -25.31 16 20 C -0.36 -8.72 6.39 24.06 0.15 -8.57 16 21 S 0.34 3.75 18.71 -56.49 -1.06 2.69 16 22 C -0.20 -1.62 10.91 66.80 0.73 -0.89 16 23 C -0.19 -2.74 10.15 21.13 0.21 -2.52 16 24 C 0.14 3.43 7.47 21.84 0.16 3.60 16 25 F -0.13 -4.11 16.45 44.97 0.74 -3.37 16 26 C 0.12 3.84 6.57 86.53 0.57 4.41 16 27 C -0.10 -3.19 3.64 -9.12 -0.03 -3.22 16 28 H 0.07 2.40 7.83 -2.39 -0.02 2.39 16 29 H 0.25 15.00 8.31 -92.71 -0.77 14.23 16 30 H 0.37 20.01 7.63 -92.71 -0.71 19.30 16 31 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.09 1.27 7.18 -2.39 -0.02 1.25 16 34 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.11 1.47 7.20 -2.39 -0.02 1.45 16 36 H 0.09 1.15 3.95 -20.53 -0.08 1.07 16 37 H 0.22 -0.14 8.06 -2.91 -0.02 -0.16 16 38 H 0.18 1.67 8.06 -2.91 -0.02 1.65 16 39 H 0.05 1.94 7.90 -2.39 -0.02 1.92 16 40 H 0.09 2.62 7.20 -2.38 -0.02 2.60 16 Total: -1.00 -79.28 339.28 2.69 -76.59 By element: Atomic # 1 Polarization: 19.61 SS G_CDS: 0.31 Total: 19.92 kcal Atomic # 6 Polarization: -6.10 SS G_CDS: 4.81 Total: -1.29 kcal Atomic # 7 Polarization: -113.62 SS G_CDS: -4.06 Total: -117.68 kcal Atomic # 8 Polarization: -25.24 SS G_CDS: -0.07 Total: -25.31 kcal Atomic # 9 Polarization: -4.11 SS G_CDS: 0.74 Total: -3.37 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 2.03 Total: 48.45 kcal Atomic # 16 Polarization: 3.75 SS G_CDS: -1.06 Total: 2.69 kcal Total: -79.28 2.69 -76.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026256584.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.832 kcal (2) G-P(sol) polarization free energy of solvation -79.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds