Wall clock time and date at job start Tue Mar 31 2020 13:38:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 120.00455 * 2 1 4 4 H 1.48506 * 109.46719 * 270.00189 * 3 2 1 5 5 H 1.48501 * 109.46793 * 29.99844 * 3 2 1 6 6 H 1.48489 * 109.47333 * 150.00088 * 3 2 1 7 7 C 1.38811 * 119.99400 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00530 * 0.02562 * 7 2 1 9 9 N 1.36943 * 119.99622 * 179.72313 * 7 2 1 10 10 C 1.46504 * 119.99781 * 180.27904 * 9 7 2 11 11 H 1.09001 * 110.44040 * 32.43658 * 10 9 7 12 12 C 1.55947 * 110.48996 * 269.73257 * 10 9 7 13 13 C 1.56398 * 105.78962 * 248.87230 * 12 10 9 14 14 C 1.51000 * 101.59328 * 25.02347 * 13 12 10 15 15 H 1.09003 * 109.72709 * 69.23846 * 14 13 12 16 16 C 1.50351 * 125.55340 * 203.98719 * 14 13 12 17 17 N 1.49212 * 104.86393 * 144.30755 * 16 14 13 18 18 C 1.34776 * 126.06141 * 172.96855 * 17 16 14 19 19 O 1.21732 * 120.00357 * 179.97438 * 18 17 16 20 20 C 1.46300 * 119.99689 * 359.96576 * 18 17 16 21 21 S 1.75821 * 125.46421 * 0.02562 * 20 18 17 22 22 C 1.70595 * 91.60804 * 179.97438 * 21 20 18 23 23 C 1.33735 * 111.03947 * 0.02562 * 22 21 20 24 24 C 1.36917 * 125.46318 * 179.71378 * 20 18 17 25 25 F 1.35102 * 123.40807 * 0.02562 * 24 20 18 26 26 C 1.49702 * 107.88254 * 352.93997 * 17 16 14 27 27 C 1.50293 * 110.49293 * 155.00395 * 10 9 7 28 28 H 1.09001 * 109.99421 * 198.25759 * 27 10 9 29 29 H 0.97009 * 119.99492 * 0.02562 * 1 2 3 30 30 H 0.97000 * 119.99808 * 0.27579 * 9 7 2 31 31 H 1.09000 * 110.18730 * 7.95849 * 12 10 9 32 32 H 1.09000 * 110.18179 * 129.79550 * 12 10 9 33 33 H 1.08995 * 111.00692 * 266.94409 * 13 12 10 34 34 H 1.08997 * 111.03286 * 143.11333 * 13 12 10 35 35 H 1.09007 * 110.35675 * 25.46544 * 16 14 13 36 36 H 1.08995 * 110.45453 * 263.20530 * 16 14 13 37 37 H 1.07999 * 124.48338 * 179.97438 * 22 21 20 38 38 H 1.07996 * 122.45617 * 179.97438 * 23 22 21 39 39 H 1.09000 * 110.84547 * 216.66722 * 26 17 16 40 40 H 1.08997 * 110.84189 * 93.05662 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4978 2.0463 -1.4002 5 1 1.4478 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 1.4701 -2.1375 0.0005 9 7 3.3796 -1.2023 -0.0052 10 6 4.1120 -2.4711 -0.0108 11 1 3.5534 -3.2306 -0.5578 12 6 4.3969 -2.9434 1.4479 13 6 5.9428 -2.8106 1.6439 14 6 6.2867 -1.7445 0.6313 15 1 5.8780 -0.7864 0.9525 16 6 7.6350 -1.5433 -0.0027 17 7 7.3403 -1.1104 -1.3999 18 6 8.2432 -0.6864 -2.3063 19 8 7.8792 -0.3584 -3.4206 20 6 9.6608 -0.6200 -1.9507 21 16 10.3426 -1.0571 -0.3902 22 6 11.9189 -0.6728 -0.9173 23 6 11.9106 -0.2458 -2.1846 24 6 10.6700 -0.2133 -2.7818 25 9 10.4687 0.1840 -4.0573 26 6 5.8640 -1.2311 -1.6168 27 6 5.4776 -2.2877 -0.6110 28 1 5.8864 -3.2532 -0.9092 29 1 -0.4850 0.8402 -0.0004 30 1 3.8646 -0.3622 -0.0056 31 1 3.8714 -2.3060 2.1590 32 1 4.0896 -3.9816 1.5738 33 1 6.4481 -3.7479 1.4112 34 1 6.1821 -2.4808 2.6548 35 1 8.1960 -2.4780 -0.0057 36 1 8.1922 -0.7691 0.5247 37 1 12.8061 -0.7617 -0.3079 38 1 12.8113 0.0476 -2.7032 39 1 5.6470 -1.5640 -2.6318 40 1 5.3619 -0.2881 -1.4010 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026256585.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:53 Heat of formation + Delta-G solvation = -4.679357 kcal Electronic energy + Delta-G solvation = -25392.047614 eV Core-core repulsion = 21635.191012 eV Total energy + Delta-G solvation = -3756.856602 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.105 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.04658 -40.73288 -38.89584 -37.47556 -35.43658 -33.44166 -31.22407 -30.87900 -29.10802 -28.89552 -25.91999 -25.23472 -23.39511 -22.84722 -21.06247 -20.27472 -19.69118 -19.15981 -18.27788 -17.83669 -17.07015 -16.29876 -16.20237 -15.79668 -15.24434 -14.99211 -14.67089 -14.58119 -14.34102 -14.06175 -13.96326 -13.77305 -13.00247 -12.80806 -12.70549 -12.49339 -12.25447 -12.14872 -11.96389 -11.70982 -11.30736 -11.06760 -10.94037 -10.78322 -10.53033 -10.41757 -10.17246 -10.09574 -9.77585 -9.59712 -9.34240 -8.98787 -8.95155 -8.62590 -7.32209 -5.80404 -3.16599 0.03330 0.96901 1.40951 1.83141 2.67081 2.99347 3.33883 3.38051 3.44414 3.90500 3.96471 4.33650 4.55206 4.55796 4.69782 4.87348 4.95010 5.04924 5.14811 5.26387 5.29271 5.40231 5.42637 5.49160 5.50806 5.59355 5.75081 5.82889 5.92420 5.93678 6.03825 6.07994 6.18504 6.24885 6.33319 6.43412 6.64899 6.88806 7.33494 7.95596 7.99990 8.38731 9.16094 9.88680 10.07204 11.37852 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.017994 B = 0.003701 C = 0.003341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.727400 B = 7563.454742 C = 8378.030330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.008 3.992 3 Si 0.878 3.122 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.245 4.245 8 H 0.092 0.908 9 N -0.743 5.743 10 C 0.200 3.800 11 H 0.068 0.932 12 C -0.144 4.144 13 C -0.096 4.096 14 C -0.127 4.127 15 H 0.088 0.912 16 C 0.107 3.893 17 N -0.621 5.621 18 C 0.603 3.397 19 O -0.522 6.522 20 C -0.310 4.310 21 S 0.271 5.729 22 C -0.229 4.229 23 C -0.178 4.178 24 C 0.160 3.840 25 F -0.104 7.104 26 C 0.133 3.867 27 C -0.123 4.123 28 H 0.083 0.917 29 H 0.260 0.740 30 H 0.360 0.640 31 H 0.078 0.922 32 H 0.059 0.941 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.177 0.823 38 H 0.155 0.845 39 H 0.086 0.914 40 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.054 -5.273 3.117 26.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.188 4.188 3 Si 0.709 3.291 4 H -0.209 1.209 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.375 4.375 8 H 0.110 0.890 9 N -0.385 5.385 10 C 0.090 3.910 11 H 0.086 0.914 12 C -0.185 4.185 13 C -0.134 4.134 14 C -0.146 4.146 15 H 0.106 0.894 16 C -0.016 4.016 17 N -0.356 5.356 18 C 0.391 3.609 19 O -0.400 6.400 20 C -0.431 4.431 21 S 0.538 5.462 22 C -0.367 4.367 23 C -0.210 4.210 24 C 0.125 3.875 25 F -0.082 7.082 26 C 0.013 3.987 27 C -0.143 4.143 28 H 0.101 0.899 29 H 0.070 0.930 30 H 0.194 0.806 31 H 0.097 0.903 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.095 0.905 36 H 0.093 0.907 37 H 0.195 0.805 38 H 0.173 0.827 39 H 0.104 0.896 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 25.065 -5.632 3.743 25.961 hybrid contribution 1.419 1.982 -1.463 2.843 sum 26.484 -3.650 2.280 26.831 Atomic orbital electron populations 1.69696 1.05087 1.25842 1.57317 1.24650 0.95167 0.97066 1.01919 0.86659 0.79149 0.85337 0.77997 1.20891 1.21657 1.20495 1.19077 0.80467 0.94722 1.43206 0.89012 1.42806 1.04025 1.01763 1.89944 1.20109 0.88518 0.89826 0.92583 0.91422 1.23821 0.93248 1.01174 1.00249 1.21744 0.97526 0.96713 0.97433 1.22214 0.93592 1.01459 0.97340 0.89389 1.21409 0.98015 1.00046 0.82118 1.49682 1.08361 1.65126 1.12431 1.16251 0.82703 0.77877 0.84098 1.90904 1.79648 1.49074 1.20350 1.24647 0.98156 1.19479 1.00864 1.83513 0.94507 1.59478 1.08730 1.25452 1.05577 1.05534 1.00096 1.19825 0.97707 1.07493 0.95981 1.16891 0.92133 0.98004 0.80490 1.91583 1.95529 1.87274 1.33847 1.21474 0.77255 0.99686 1.00293 1.22574 0.98882 0.98406 0.94458 0.89912 0.93009 0.80611 0.90349 0.92212 0.91666 0.91731 0.90458 0.90667 0.80535 0.82709 0.89610 0.90307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.80 13.97 55.49 0.78 -28.03 16 2 C 0.01 0.23 5.50 -17.43 -0.10 0.13 16 3 Si 0.88 21.87 27.73 -169.99 -4.71 17.15 16 4 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 5 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 6 H -0.28 -6.47 6.52 56.52 0.37 -6.10 16 7 C -0.24 -6.59 10.44 -15.06 -0.16 -6.74 16 8 H 0.09 2.64 8.06 -52.49 -0.42 2.22 16 9 N -0.74 -16.29 4.61 -53.20 -0.25 -16.53 16 10 C 0.20 3.44 3.46 -67.70 -0.23 3.21 16 11 H 0.07 1.21 8.09 -51.93 -0.42 0.79 16 12 C -0.14 -2.11 6.73 -23.33 -0.16 -2.27 16 13 C -0.10 -1.07 6.71 -25.91 -0.17 -1.24 16 14 C -0.13 -1.57 2.73 -90.27 -0.25 -1.82 16 15 H 0.09 1.27 7.64 -51.93 -0.40 0.88 16 16 C 0.11 1.17 5.01 -3.86 -0.02 1.15 16 17 N -0.62 -8.94 3.43 -173.24 -0.59 -9.54 16 18 C 0.60 9.68 7.83 -13.02 -0.10 9.58 16 19 O -0.52 -10.46 16.47 5.16 0.08 -10.38 16 20 C -0.31 -3.94 6.39 -36.82 -0.24 -4.17 16 21 S 0.27 2.12 18.52 -107.50 -1.99 0.13 16 22 C -0.23 -1.51 10.91 29.15 0.32 -1.19 16 23 C -0.18 -1.52 10.15 -41.35 -0.42 -1.94 16 24 C 0.16 1.98 7.48 -40.25 -0.30 1.68 16 25 F -0.10 -1.54 16.42 2.25 0.04 -1.51 16 26 C 0.13 2.13 6.52 -3.31 -0.02 2.11 16 27 C -0.12 -1.76 2.60 -90.34 -0.23 -2.00 16 28 H 0.08 1.06 8.13 -51.93 -0.42 0.64 16 29 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 30 H 0.36 7.91 4.06 -40.82 -0.17 7.74 16 31 H 0.08 1.34 7.98 -51.93 -0.41 0.92 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.08 0.69 7.48 -51.93 -0.39 0.30 16 36 H 0.08 0.71 6.44 -50.32 -0.32 0.39 16 37 H 0.18 0.60 8.06 -52.49 -0.42 0.17 16 38 H 0.16 0.97 8.06 -52.49 -0.42 0.55 16 39 H 0.09 1.43 8.09 -51.93 -0.42 1.01 16 40 H 0.08 1.41 6.96 -51.93 -0.36 1.04 16 LS Contribution 336.14 15.07 5.07 5.07 Total: -1.00 -33.45 336.14 -8.68 -42.13 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -5.02 Total: 5.03 kcal Atomic # 6 Polarization: -1.45 SS G_CDS: -2.08 Total: -3.53 kcal Atomic # 7 Polarization: -54.04 SS G_CDS: -0.06 Total: -54.10 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: 0.08 Total: -10.38 kcal Atomic # 9 Polarization: -1.54 SS G_CDS: 0.04 Total: -1.51 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.71 Total: 17.15 kcal Atomic # 16 Polarization: 2.12 SS G_CDS: -1.99 Total: 0.13 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.45 -8.68 -42.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026256585.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.452 kcal (2) G-P(sol) polarization free energy of solvation -33.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds