Wall clock time and date at job start Tue Mar 31 2020 13:38:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 120.00455 * 2 1 4 4 H 1.48506 * 109.46719 * 270.00189 * 3 2 1 5 5 H 1.48501 * 109.46793 * 29.99844 * 3 2 1 6 6 H 1.48489 * 109.47333 * 150.00088 * 3 2 1 7 7 C 1.38811 * 119.99400 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00530 * 0.02562 * 7 2 1 9 9 N 1.36943 * 119.99622 * 179.72313 * 7 2 1 10 10 C 1.46504 * 119.99781 * 180.27904 * 9 7 2 11 11 H 1.09001 * 110.44040 * 32.43658 * 10 9 7 12 12 C 1.55947 * 110.48996 * 269.73257 * 10 9 7 13 13 C 1.56398 * 105.78962 * 248.87230 * 12 10 9 14 14 C 1.51000 * 101.59328 * 25.02347 * 13 12 10 15 15 H 1.09003 * 109.72709 * 69.23846 * 14 13 12 16 16 C 1.50351 * 125.55340 * 203.98719 * 14 13 12 17 17 N 1.49212 * 104.86393 * 144.30755 * 16 14 13 18 18 C 1.34776 * 126.06141 * 172.96855 * 17 16 14 19 19 O 1.21732 * 120.00357 * 179.97438 * 18 17 16 20 20 C 1.46300 * 119.99689 * 359.96576 * 18 17 16 21 21 S 1.75821 * 125.46421 * 0.02562 * 20 18 17 22 22 C 1.70595 * 91.60804 * 179.97438 * 21 20 18 23 23 C 1.33735 * 111.03947 * 0.02562 * 22 21 20 24 24 C 1.36917 * 125.46318 * 179.71378 * 20 18 17 25 25 F 1.35102 * 123.40807 * 0.02562 * 24 20 18 26 26 C 1.49702 * 107.88254 * 352.93997 * 17 16 14 27 27 C 1.50293 * 110.49293 * 155.00395 * 10 9 7 28 28 H 1.09001 * 109.99421 * 198.25759 * 27 10 9 29 29 H 0.97009 * 119.99492 * 0.02562 * 1 2 3 30 30 H 0.97000 * 119.99808 * 0.27579 * 9 7 2 31 31 H 1.09000 * 110.18730 * 7.95849 * 12 10 9 32 32 H 1.09000 * 110.18179 * 129.79550 * 12 10 9 33 33 H 1.08995 * 111.00692 * 266.94409 * 13 12 10 34 34 H 1.08997 * 111.03286 * 143.11333 * 13 12 10 35 35 H 1.09007 * 110.35675 * 25.46544 * 16 14 13 36 36 H 1.08995 * 110.45453 * 263.20530 * 16 14 13 37 37 H 1.07999 * 124.48338 * 179.97438 * 22 21 20 38 38 H 1.07996 * 122.45617 * 179.97438 * 23 22 21 39 39 H 1.09000 * 110.84547 * 216.66722 * 26 17 16 40 40 H 1.08997 * 110.84189 * 93.05662 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4978 2.0463 -1.4002 5 1 1.4478 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 1.4701 -2.1375 0.0005 9 7 3.3796 -1.2023 -0.0052 10 6 4.1120 -2.4711 -0.0108 11 1 3.5534 -3.2306 -0.5578 12 6 4.3969 -2.9434 1.4479 13 6 5.9428 -2.8106 1.6439 14 6 6.2867 -1.7445 0.6313 15 1 5.8780 -0.7864 0.9525 16 6 7.6350 -1.5433 -0.0027 17 7 7.3403 -1.1104 -1.3999 18 6 8.2432 -0.6864 -2.3063 19 8 7.8792 -0.3584 -3.4206 20 6 9.6608 -0.6200 -1.9507 21 16 10.3426 -1.0571 -0.3902 22 6 11.9189 -0.6728 -0.9173 23 6 11.9106 -0.2458 -2.1846 24 6 10.6700 -0.2133 -2.7818 25 9 10.4687 0.1840 -4.0573 26 6 5.8640 -1.2311 -1.6168 27 6 5.4776 -2.2877 -0.6110 28 1 5.8864 -3.2532 -0.9092 29 1 -0.4850 0.8402 -0.0004 30 1 3.8646 -0.3622 -0.0056 31 1 3.8714 -2.3060 2.1590 32 1 4.0896 -3.9816 1.5738 33 1 6.4481 -3.7479 1.4112 34 1 6.1821 -2.4808 2.6548 35 1 8.1960 -2.4780 -0.0057 36 1 8.1922 -0.7691 0.5247 37 1 12.8061 -0.7617 -0.3079 38 1 12.8113 0.0476 -2.7032 39 1 5.6470 -1.5640 -2.6318 40 1 5.3619 -0.2881 -1.4010 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026256585.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:52 Heat of formation + Delta-G solvation = -27.217275 kcal Electronic energy + Delta-G solvation = -25393.024932 eV Core-core repulsion = 21635.191012 eV Total energy + Delta-G solvation = -3757.833919 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.105 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -50.02151 -41.88895 -40.05042 -38.26387 -36.85667 -35.13019 -33.02527 -31.94722 -30.37510 -29.91069 -27.23846 -26.07279 -24.84887 -24.31244 -21.99132 -21.29029 -20.62539 -20.51192 -19.84003 -19.10602 -18.10427 -17.41085 -17.22120 -16.91760 -16.62600 -16.18570 -15.90386 -15.69565 -15.48490 -15.28248 -14.96309 -14.89495 -14.60927 -14.16742 -13.86007 -13.66256 -13.45593 -13.34320 -13.11085 -12.96511 -12.72979 -12.55923 -12.24020 -11.97681 -11.96557 -11.83736 -11.65574 -11.42714 -11.28860 -11.00725 -10.92287 -10.19533 -9.88519 -9.42955 -9.28908 -8.02902 -5.34070 -0.74380 0.26024 0.77730 1.10911 1.31301 1.36199 1.41139 1.57985 1.89870 2.45151 2.85489 3.23182 3.29682 3.37239 3.57228 3.73211 3.84286 3.93264 4.10977 4.17147 4.33282 4.34859 4.36581 4.50195 4.55944 4.66355 4.69332 4.79173 4.82888 4.85095 4.95058 4.98545 5.10825 5.18229 5.23304 5.33275 5.44291 5.63538 5.81563 6.22527 6.23480 6.84600 7.08484 7.86036 8.02334 9.19046 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.017994 B = 0.003701 C = 0.003341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.727400 B = 7563.454742 C = 8378.030330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.983 5.983 2 C -0.060 4.060 3 Si 0.940 3.060 4 H -0.290 1.290 5 H -0.295 1.295 6 H -0.252 1.252 7 C -0.219 4.219 8 H 0.063 0.937 9 N -0.746 5.746 10 C 0.187 3.813 11 H 0.053 0.947 12 C -0.140 4.140 13 C -0.079 4.079 14 C -0.112 4.112 15 H 0.066 0.934 16 C 0.107 3.893 17 N -0.619 5.619 18 C 0.595 3.405 19 O -0.583 6.583 20 C -0.358 4.358 21 S 0.342 5.658 22 C -0.199 4.199 23 C -0.192 4.192 24 C 0.139 3.861 25 F -0.131 7.131 26 C 0.130 3.870 27 C -0.123 4.123 28 H 0.108 0.892 29 H 0.256 0.744 30 H 0.362 0.638 31 H 0.051 0.949 32 H 0.074 0.926 33 H 0.098 0.902 34 H 0.086 0.914 35 H 0.111 0.889 36 H 0.097 0.903 37 H 0.222 0.778 38 H 0.176 0.824 39 H 0.066 0.934 40 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.897 -6.416 5.982 32.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.635 5.635 2 C -0.252 4.252 3 Si 0.768 3.232 4 H -0.217 1.217 5 H -0.221 1.221 6 H -0.177 1.177 7 C -0.350 4.350 8 H 0.081 0.919 9 N -0.390 5.390 10 C 0.079 3.921 11 H 0.071 0.929 12 C -0.180 4.180 13 C -0.117 4.117 14 C -0.131 4.131 15 H 0.084 0.916 16 C -0.015 4.015 17 N -0.353 5.353 18 C 0.385 3.615 19 O -0.465 6.465 20 C -0.479 4.479 21 S 0.609 5.391 22 C -0.337 4.337 23 C -0.222 4.222 24 C 0.103 3.897 25 F -0.109 7.109 26 C 0.009 3.991 27 C -0.142 4.142 28 H 0.126 0.874 29 H 0.065 0.935 30 H 0.195 0.805 31 H 0.070 0.930 32 H 0.093 0.907 33 H 0.116 0.884 34 H 0.104 0.896 35 H 0.129 0.871 36 H 0.115 0.885 37 H 0.239 0.761 38 H 0.193 0.807 39 H 0.084 0.916 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 29.979 -6.828 6.668 31.461 hybrid contribution -0.040 2.206 -2.328 3.208 sum 29.939 -4.623 4.339 30.603 Atomic orbital electron populations 1.69859 1.06916 1.26345 1.60352 1.25344 0.95893 1.00559 1.03393 0.85639 0.78918 0.80994 0.77609 1.21672 1.22131 1.17677 1.19073 0.82648 0.93357 1.39929 0.91865 1.42816 1.02332 1.03821 1.90009 1.20420 0.89407 0.87407 0.94912 0.92866 1.23632 0.96388 1.01226 0.96729 1.21702 0.94169 0.97705 0.98126 1.22184 0.93789 1.00809 0.96357 0.91595 1.21667 0.97669 1.02331 0.79791 1.49706 1.07177 1.64593 1.13794 1.16811 0.84307 0.76872 0.83465 1.90853 1.81015 1.51785 1.22865 1.24557 0.96353 1.22553 1.04453 1.83063 0.94107 1.57401 1.04521 1.26009 1.06549 1.01869 0.99288 1.19965 0.96760 1.08623 0.96892 1.17566 0.93946 0.98470 0.79729 1.91505 1.95853 1.87733 1.35836 1.21295 0.78902 0.99036 0.99887 1.22401 0.97468 0.99156 0.95219 0.87368 0.93509 0.80463 0.92983 0.90719 0.88353 0.89568 0.87083 0.88519 0.76147 0.80667 0.91563 0.92814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.31 13.97 21.65 0.30 -63.00 16 2 C -0.06 -3.57 5.50 84.86 0.47 -3.10 16 3 Si 0.94 46.44 27.73 68.60 1.90 48.34 16 4 H -0.29 -14.55 7.11 99.48 0.71 -13.84 16 5 H -0.29 -14.69 7.11 99.48 0.71 -13.98 16 6 H -0.25 -11.16 6.52 99.48 0.65 -10.51 16 7 C -0.22 -12.15 10.44 84.03 0.88 -11.28 16 8 H 0.06 3.82 8.06 -2.91 -0.02 3.79 16 9 N -0.75 -33.15 4.61 -322.23 -1.49 -34.63 16 10 C 0.19 6.34 3.46 45.14 0.16 6.49 16 11 H 0.05 1.93 8.09 -2.39 -0.02 1.91 16 12 C -0.14 -3.77 6.73 32.80 0.22 -3.55 16 13 C -0.08 -1.38 6.71 31.13 0.21 -1.17 16 14 C -0.11 -2.39 2.73 -10.56 -0.03 -2.42 16 15 H 0.07 1.74 7.64 -2.39 -0.02 1.72 16 16 C 0.11 1.90 5.01 85.00 0.43 2.32 16 17 N -0.62 -17.20 3.43 -820.20 -2.81 -20.01 16 18 C 0.59 19.28 7.83 86.34 0.68 19.96 16 19 O -0.58 -24.82 16.47 -4.45 -0.07 -24.89 16 20 C -0.36 -8.57 6.39 24.06 0.15 -8.42 16 21 S 0.34 3.66 18.52 -56.49 -1.05 2.61 16 22 C -0.20 -1.52 10.91 66.80 0.73 -0.80 16 23 C -0.19 -2.66 10.15 21.12 0.21 -2.44 16 24 C 0.14 3.33 7.48 21.84 0.16 3.50 16 25 F -0.13 -4.05 16.42 44.97 0.74 -3.32 16 26 C 0.13 4.24 6.52 85.07 0.56 4.79 16 27 C -0.12 -3.33 2.60 -10.61 -0.03 -3.36 16 28 H 0.11 2.45 8.13 -2.39 -0.02 2.43 16 29 H 0.26 15.82 8.31 -92.70 -0.77 15.05 16 30 H 0.36 15.89 4.06 -92.71 -0.38 15.52 16 31 H 0.05 1.70 7.98 -2.39 -0.02 1.68 16 32 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.11 1.30 7.48 -2.38 -0.02 1.28 16 36 H 0.10 1.35 6.44 -3.42 -0.02 1.33 16 37 H 0.22 -0.21 8.06 -2.91 -0.02 -0.23 16 38 H 0.18 1.61 8.06 -2.91 -0.02 1.59 16 39 H 0.07 2.36 8.09 -2.39 -0.02 2.34 16 40 H 0.05 1.99 6.96 -2.39 -0.02 1.97 16 Total: -1.00 -81.13 336.14 2.96 -78.17 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: 0.64 Total: 16.21 kcal Atomic # 6 Polarization: -4.27 SS G_CDS: 4.79 Total: 0.52 kcal Atomic # 7 Polarization: -113.66 SS G_CDS: -3.99 Total: -117.65 kcal Atomic # 8 Polarization: -24.82 SS G_CDS: -0.07 Total: -24.89 kcal Atomic # 9 Polarization: -4.05 SS G_CDS: 0.74 Total: -3.32 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 1.90 Total: 48.34 kcal Atomic # 16 Polarization: 3.66 SS G_CDS: -1.05 Total: 2.61 kcal Total: -81.13 2.96 -78.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026256585.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.955 kcal (2) G-P(sol) polarization free energy of solvation -81.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds