Wall clock time and date at job start Tue Mar 31 2020 14:00:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31929 * 119.01986 * 2 1 4 4 C 1.32131 * 121.05987 * 180.02562 * 3 2 1 5 5 C 1.38997 * 119.12103 * 359.71905 * 4 3 2 6 6 Cl 1.73597 * 120.88402 * 180.29480 * 5 4 3 7 7 C 1.39625 * 118.22612 * 0.53933 * 5 4 3 8 8 C 1.48370 * 120.56585 * 179.73742 * 7 5 4 9 9 O 1.21494 * 119.99688 * 359.71737 * 8 7 5 10 10 N 1.34771 * 120.00438 * 179.72162 * 8 7 5 11 11 C 1.46500 * 120.00266 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.47479 * 184.66200 * 11 10 8 13 13 H 1.09003 * 109.99808 * 54.40555 * 12 11 10 14 14 C 1.54322 * 109.88159 * 293.31179 * 12 11 10 15 15 C 1.55280 * 103.00693 * 218.46756 * 14 12 11 16 16 C 1.54911 * 101.52761 * 35.36011 * 15 14 12 17 17 N 1.47019 * 109.88241 * 175.50089 * 12 11 10 18 18 C 1.36933 * 125.65189 * 298.33224 * 17 12 11 19 19 H 1.08004 * 119.99871 * 346.29954 * 18 17 12 20 20 C 1.38813 * 120.00231 * 166.29081 * 18 17 12 21 21 N 1.31625 * 119.99899 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00141 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.46848 * 60.00610 * 22 20 18 24 24 H 1.48503 * 109.47194 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47404 * 300.00552 * 22 20 18 26 26 N 1.31517 * 119.01746 * 180.02562 * 2 1 3 27 27 H 1.09003 * 109.46955 * 269.98224 * 1 2 3 28 28 H 1.09000 * 109.47339 * 29.97991 * 1 2 3 29 29 H 1.08992 * 109.47473 * 149.98516 * 1 2 3 30 30 H 1.07998 * 120.44413 * 179.97438 * 4 3 2 31 31 H 0.97002 * 119.99926 * 0.02562 * 10 8 7 32 32 H 1.09002 * 109.46997 * 64.65685 * 11 10 8 33 33 H 1.09000 * 109.47147 * 304.66068 * 11 10 8 34 34 H 1.08999 * 110.72020 * 336.74994 * 14 12 11 35 35 H 1.09002 * 110.72347 * 100.02645 * 14 12 11 36 36 H 1.08997 * 110.95433 * 277.33395 * 15 14 12 37 37 H 1.09007 * 111.10123 * 153.44765 * 15 14 12 38 38 H 1.08995 * 110.36280 * 204.23556 * 16 15 14 39 39 H 1.09003 * 110.36701 * 82.02321 * 16 15 14 40 40 H 0.96998 * 119.99971 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1470 1.1537 0.0000 4 6 3.4675 1.2007 -0.0005 5 6 4.1867 0.0113 0.0049 6 17 5.9227 0.0197 0.0122 7 6 3.4757 -1.1904 -0.0009 8 6 4.1910 -2.4903 -0.0014 9 8 5.4057 -2.5152 -0.0019 10 7 3.4934 -3.6434 -0.0013 11 6 4.1998 -4.9269 -0.0024 12 6 3.1861 -6.0669 -0.1193 13 1 2.5532 -5.9147 -0.9937 14 6 2.3162 -6.1283 1.1539 15 6 2.1443 -7.6539 1.3864 16 6 3.5200 -8.1947 0.9228 17 7 3.8902 -7.3528 -0.2294 18 6 4.7475 -7.7097 -1.2358 19 1 4.7881 -7.1253 -2.1432 20 6 5.5645 -8.8223 -1.0897 21 7 5.5147 -9.5347 0.0160 22 14 6.7344 -9.3088 -2.4622 23 1 7.6849 -8.1972 -2.7195 24 1 7.4892 -10.5235 -2.0621 25 1 5.9589 -9.5927 -3.6965 26 7 2.1450 -1.1501 -0.0005 27 1 -0.3633 -0.0003 1.0277 28 1 -0.3634 0.8902 -0.5135 29 1 -0.3634 -0.8898 -0.5140 30 1 3.9812 2.1507 -0.0009 31 1 2.5236 -3.6235 -0.0014 32 1 4.7610 -5.0335 0.9259 33 1 4.8863 -4.9631 -0.8482 34 1 2.8322 -5.6674 1.9961 35 1 1.3504 -5.6522 0.9845 36 1 1.3393 -8.0540 0.7700 37 1 1.9733 -7.8734 2.4404 38 1 3.4345 -9.2378 0.6185 39 1 4.2563 -8.0918 1.7199 40 1 6.0854 -10.3124 0.1180 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028180973.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:00:06 Heat of formation + Delta-G solvation = 38.781237 kcal Electronic energy + Delta-G solvation = -24807.039504 eV Core-core repulsion = 21069.943750 eV Total energy + Delta-G solvation = -3737.095754 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.109 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.63950 -39.36284 -37.65412 -36.90755 -34.59994 -34.08856 -33.34823 -32.48073 -29.73008 -28.80426 -28.74211 -26.21360 -24.81269 -24.00315 -23.04058 -20.88537 -20.18231 -19.61733 -18.60329 -17.96429 -16.74677 -16.37511 -16.05786 -15.78582 -15.39721 -14.91558 -14.73188 -14.31988 -13.87476 -13.86534 -13.42516 -13.35665 -12.96481 -12.80256 -12.13708 -12.10065 -11.88932 -11.83799 -11.74675 -11.59603 -11.37499 -11.23308 -10.95666 -10.78486 -10.39096 -10.23500 -10.13024 -9.91640 -9.83857 -9.71473 -9.49900 -9.38003 -8.76739 -8.58567 -6.86507 -5.77562 -3.14437 0.03675 0.34867 1.70113 2.63118 2.93074 3.40242 3.40987 3.42475 3.45238 3.46293 3.55013 4.13755 4.30340 4.48538 4.61541 4.99412 5.16164 5.29474 5.32386 5.38418 5.40153 5.49660 5.61128 5.79918 5.81646 6.00643 6.10369 6.23435 6.24035 6.44410 6.49294 6.55920 6.66395 6.76070 7.01934 7.42473 7.50944 7.58864 7.67022 7.78272 8.21948 8.26269 9.16180 9.76645 10.43437 11.33990 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.015446 B = 0.003292 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1812.276671 B = 8504.639367 C = 9745.239763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.316 3.684 3 N -0.495 5.495 4 C 0.166 3.834 5 C -0.112 4.112 6 Cl 0.002 6.998 7 C 0.153 3.847 8 C 0.553 3.447 9 O -0.504 6.504 10 N -0.695 5.695 11 C 0.107 3.893 12 C 0.152 3.848 13 H 0.039 0.961 14 C -0.128 4.128 15 C -0.148 4.148 16 C 0.171 3.829 17 N -0.588 5.588 18 C -0.235 4.235 19 H 0.076 0.924 20 C 0.000 4.000 21 N -0.916 5.916 22 Si 0.911 3.089 23 H -0.283 1.283 24 H -0.290 1.290 25 H -0.284 1.284 26 N -0.481 5.481 27 H 0.091 0.909 28 H 0.089 0.911 29 H 0.092 0.908 30 H 0.184 0.816 31 H 0.406 0.594 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.063 0.937 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.074 0.926 39 H 0.025 0.975 40 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.876 20.184 2.245 22.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.050 3.950 3 N -0.210 5.210 4 C -0.002 4.002 5 C -0.145 4.145 6 Cl 0.032 6.968 7 C 0.004 3.996 8 C 0.335 3.665 9 O -0.378 6.378 10 N -0.346 5.346 11 C -0.018 4.018 12 C 0.044 3.956 13 H 0.057 0.943 14 C -0.166 4.166 15 C -0.187 4.187 16 C 0.047 3.953 17 N -0.312 5.312 18 C -0.364 4.364 19 H 0.093 0.907 20 C -0.198 4.198 21 N -0.562 5.562 22 Si 0.741 3.259 23 H -0.209 1.209 24 H -0.215 1.215 25 H -0.211 1.211 26 N -0.199 5.199 27 H 0.109 0.891 28 H 0.108 0.892 29 H 0.110 0.890 30 H 0.201 0.799 31 H 0.241 0.759 32 H 0.085 0.915 33 H 0.094 0.906 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.093 0.907 39 H 0.043 0.957 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -9.640 19.842 2.206 22.170 hybrid contribution 1.397 -0.111 -0.641 1.541 sum -8.242 19.732 1.565 21.441 Atomic orbital electron populations 1.20644 0.84575 1.04793 1.04432 1.23402 0.98665 0.82825 0.90141 1.68312 1.08977 1.30348 1.13396 1.23415 0.89211 0.97411 0.90204 1.22911 0.90151 0.95979 1.05410 1.98452 1.03922 1.98600 1.95875 1.21873 0.89486 0.94624 0.93590 1.17681 0.86864 0.82711 0.79293 1.90906 1.12027 1.86319 1.48550 1.46022 1.11052 1.05682 1.71811 1.22411 0.96711 0.79871 1.02792 1.21131 0.92095 0.86779 0.95643 0.94292 1.22650 0.98628 0.97600 0.97700 1.23026 1.00801 0.95051 0.99800 1.21477 0.89085 0.96032 0.88746 1.44489 1.52138 1.08959 1.25647 1.18948 1.13309 1.10091 0.94021 0.90655 1.24896 0.98771 0.98771 0.97313 1.69928 1.41520 1.19166 1.25558 0.86224 0.80917 0.77737 0.81053 1.20920 1.21542 1.21054 1.68353 1.07538 1.30912 1.13049 0.89063 0.89192 0.88959 0.79878 0.75861 0.91504 0.90631 0.91846 0.92216 0.92267 0.92298 0.90745 0.95666 0.93533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.54 10.31 36.01 0.37 -0.17 16 2 C 0.32 3.21 7.64 -157.32 -1.20 2.01 16 3 N -0.50 -5.00 10.31 -10.70 -0.11 -5.11 16 4 C 0.17 1.57 11.14 -17.14 -0.19 1.38 16 5 C -0.11 -1.34 6.40 -38.78 -0.25 -1.59 16 6 Cl 0.00 0.03 26.25 -51.86 -1.36 -1.33 16 7 C 0.15 2.09 6.79 -82.61 -0.56 1.52 16 8 C 0.55 9.00 7.82 -12.09 -0.09 8.90 16 9 O -0.50 -9.61 14.14 5.37 0.08 -9.53 16 10 N -0.69 -10.89 5.40 -61.08 -0.33 -11.22 16 11 C 0.11 2.04 5.09 -4.04 -0.02 2.02 16 12 C 0.15 2.98 3.22 -66.96 -0.22 2.76 16 13 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 14 C -0.13 -2.11 6.07 -24.83 -0.15 -2.26 16 15 C -0.15 -2.68 7.10 -24.51 -0.17 -2.85 16 16 C 0.17 4.04 5.42 -2.53 -0.01 4.02 16 17 N -0.59 -14.46 3.13 -162.57 -0.51 -14.97 16 18 C -0.24 -6.41 9.73 -15.06 -0.15 -6.55 16 19 H 0.08 2.00 7.83 -52.48 -0.41 1.59 16 20 C 0.00 -0.01 5.47 -17.43 -0.10 -0.10 16 21 N -0.92 -26.47 10.54 55.49 0.58 -25.89 16 22 Si 0.91 22.04 29.55 -169.99 -5.02 17.02 16 23 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 25 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 26 N -0.48 -5.77 9.59 -7.31 -0.07 -5.84 16 27 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.18 1.08 8.06 -52.49 -0.42 0.66 16 31 H 0.41 5.51 7.63 -40.82 -0.31 5.20 16 32 H 0.07 1.39 8.04 -51.93 -0.42 0.97 16 33 H 0.08 1.64 7.86 -51.93 -0.41 1.23 16 34 H 0.06 1.03 7.78 -51.93 -0.40 0.63 16 35 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 37 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 38 H 0.07 1.96 6.86 -51.93 -0.36 1.60 16 39 H 0.03 0.65 8.08 -51.93 -0.42 0.23 16 40 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 349.88 15.07 5.27 5.27 Total: -1.00 -31.49 349.88 -9.46 -40.95 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -5.24 Total: 1.55 kcal Atomic # 6 Polarization: 11.83 SS G_CDS: -2.74 Total: 9.09 kcal Atomic # 7 Polarization: -62.59 SS G_CDS: -0.43 Total: -63.02 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: 0.08 Total: -9.53 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Atomic # 17 Polarization: 0.03 SS G_CDS: -1.36 Total: -1.33 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.49 -9.46 -40.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028180973.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.731 kcal (2) G-P(sol) polarization free energy of solvation -31.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.950 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds