Wall clock time and date at job start Tue Mar 31 2020 14:00:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31929 * 119.01986 * 2 1 4 4 C 1.32131 * 121.05987 * 180.02562 * 3 2 1 5 5 C 1.38997 * 119.12103 * 359.71905 * 4 3 2 6 6 Cl 1.73597 * 120.88402 * 180.29480 * 5 4 3 7 7 C 1.39625 * 118.22612 * 0.53933 * 5 4 3 8 8 C 1.48370 * 120.56585 * 179.73742 * 7 5 4 9 9 O 1.21494 * 119.99688 * 359.71737 * 8 7 5 10 10 N 1.34771 * 120.00438 * 179.72162 * 8 7 5 11 11 C 1.46500 * 120.00266 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.47479 * 184.66200 * 11 10 8 13 13 H 1.09003 * 109.99808 * 54.40555 * 12 11 10 14 14 C 1.54322 * 109.88159 * 293.31179 * 12 11 10 15 15 C 1.55280 * 103.00693 * 218.46756 * 14 12 11 16 16 C 1.54911 * 101.52761 * 35.36011 * 15 14 12 17 17 N 1.47019 * 109.88241 * 175.50089 * 12 11 10 18 18 C 1.36933 * 125.65189 * 298.33224 * 17 12 11 19 19 H 1.08004 * 119.99871 * 346.29954 * 18 17 12 20 20 C 1.38813 * 120.00231 * 166.29081 * 18 17 12 21 21 N 1.31625 * 119.99899 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00141 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.46848 * 60.00610 * 22 20 18 24 24 H 1.48503 * 109.47194 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47404 * 300.00552 * 22 20 18 26 26 N 1.31517 * 119.01746 * 180.02562 * 2 1 3 27 27 H 1.09003 * 109.46955 * 269.98224 * 1 2 3 28 28 H 1.09000 * 109.47339 * 29.97991 * 1 2 3 29 29 H 1.08992 * 109.47473 * 149.98516 * 1 2 3 30 30 H 1.07998 * 120.44413 * 179.97438 * 4 3 2 31 31 H 0.97002 * 119.99926 * 0.02562 * 10 8 7 32 32 H 1.09002 * 109.46997 * 64.65685 * 11 10 8 33 33 H 1.09000 * 109.47147 * 304.66068 * 11 10 8 34 34 H 1.08999 * 110.72020 * 336.74994 * 14 12 11 35 35 H 1.09002 * 110.72347 * 100.02645 * 14 12 11 36 36 H 1.08997 * 110.95433 * 277.33395 * 15 14 12 37 37 H 1.09007 * 111.10123 * 153.44765 * 15 14 12 38 38 H 1.08995 * 110.36280 * 204.23556 * 16 15 14 39 39 H 1.09003 * 110.36701 * 82.02321 * 16 15 14 40 40 H 0.96998 * 119.99971 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1470 1.1537 0.0000 4 6 3.4675 1.2007 -0.0005 5 6 4.1867 0.0113 0.0049 6 17 5.9227 0.0197 0.0122 7 6 3.4757 -1.1904 -0.0009 8 6 4.1910 -2.4903 -0.0014 9 8 5.4057 -2.5152 -0.0019 10 7 3.4934 -3.6434 -0.0013 11 6 4.1998 -4.9269 -0.0024 12 6 3.1861 -6.0669 -0.1193 13 1 2.5532 -5.9147 -0.9937 14 6 2.3162 -6.1283 1.1539 15 6 2.1443 -7.6539 1.3864 16 6 3.5200 -8.1947 0.9228 17 7 3.8902 -7.3528 -0.2294 18 6 4.7475 -7.7097 -1.2358 19 1 4.7881 -7.1253 -2.1432 20 6 5.5645 -8.8223 -1.0897 21 7 5.5147 -9.5347 0.0160 22 14 6.7344 -9.3088 -2.4622 23 1 7.6849 -8.1972 -2.7195 24 1 7.4892 -10.5235 -2.0621 25 1 5.9589 -9.5927 -3.6965 26 7 2.1450 -1.1501 -0.0005 27 1 -0.3633 -0.0003 1.0277 28 1 -0.3634 0.8902 -0.5135 29 1 -0.3634 -0.8898 -0.5140 30 1 3.9812 2.1507 -0.0009 31 1 2.5236 -3.6235 -0.0014 32 1 4.7610 -5.0335 0.9259 33 1 4.8863 -4.9631 -0.8482 34 1 2.8322 -5.6674 1.9961 35 1 1.3504 -5.6522 0.9845 36 1 1.3393 -8.0540 0.7700 37 1 1.9733 -7.8734 2.4404 38 1 3.4345 -9.2378 0.6185 39 1 4.2563 -8.0918 1.7199 40 1 6.0854 -10.3124 0.1180 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028180973.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:00:06 Heat of formation + Delta-G solvation = 17.753966 kcal Electronic energy + Delta-G solvation = -24807.951315 eV Core-core repulsion = 21069.943750 eV Total energy + Delta-G solvation = -3738.007565 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.109 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.52418 -40.67914 -39.27519 -37.85062 -35.94120 -35.16103 -34.38286 -34.12425 -31.46014 -30.47705 -29.40981 -27.39110 -26.57788 -25.41376 -24.03262 -22.22022 -21.77843 -21.20456 -19.71743 -19.02861 -18.54093 -17.36188 -17.29559 -17.01673 -16.61805 -16.42263 -16.05354 -15.80217 -15.60609 -14.76190 -14.65157 -14.57851 -14.03793 -13.90808 -13.64926 -13.43406 -13.25751 -13.04181 -12.88610 -12.87578 -12.67133 -12.61854 -12.54958 -12.15291 -12.06261 -11.85770 -11.70307 -11.49656 -11.46041 -11.40591 -10.68528 -10.41662 -10.40961 -10.13967 -8.87451 -7.88521 -5.26260 -0.92043 -0.44926 0.79250 1.44074 1.47273 1.52064 1.52894 1.73157 2.44578 2.47090 2.57803 2.80164 3.17392 3.30787 3.36919 3.72474 3.81913 3.94722 3.97782 4.24187 4.28315 4.41554 4.53775 4.71385 4.75267 4.75547 4.81286 4.93228 4.99237 5.13113 5.16944 5.26193 5.27624 5.40882 5.46677 5.53151 5.66997 5.78717 6.22423 6.33328 6.66928 6.97980 7.08797 7.75525 8.41036 9.21756 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.015446 B = 0.003292 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1812.276671 B = 8504.639367 C = 9745.239763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.314 3.686 3 N -0.495 5.495 4 C 0.183 3.817 5 C -0.121 4.121 6 Cl -0.010 7.010 7 C 0.137 3.863 8 C 0.552 3.448 9 O -0.539 6.539 10 N -0.683 5.683 11 C 0.128 3.872 12 C 0.149 3.851 13 H 0.050 0.950 14 C -0.114 4.114 15 C -0.132 4.132 16 C 0.173 3.827 17 N -0.610 5.610 18 C -0.242 4.242 19 H 0.076 0.924 20 C -0.057 4.057 21 N -0.945 5.945 22 Si 0.971 3.029 23 H -0.283 1.283 24 H -0.293 1.293 25 H -0.274 1.274 26 N -0.488 5.488 27 H 0.107 0.893 28 H 0.104 0.896 29 H 0.100 0.900 30 H 0.220 0.780 31 H 0.419 0.581 32 H 0.045 0.955 33 H 0.042 0.958 34 H 0.066 0.934 35 H 0.103 0.897 36 H 0.070 0.930 37 H 0.084 0.916 38 H 0.038 0.962 39 H -0.008 1.008 40 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.410 22.651 2.138 25.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.048 3.952 3 N -0.210 5.210 4 C 0.014 3.986 5 C -0.154 4.154 6 Cl 0.019 6.981 7 C -0.011 4.011 8 C 0.335 3.665 9 O -0.415 6.415 10 N -0.335 5.335 11 C 0.002 3.998 12 C 0.041 3.959 13 H 0.067 0.933 14 C -0.152 4.152 15 C -0.171 4.171 16 C 0.048 3.952 17 N -0.334 5.334 18 C -0.371 4.371 19 H 0.093 0.907 20 C -0.251 4.251 21 N -0.592 5.592 22 Si 0.799 3.201 23 H -0.209 1.209 24 H -0.219 1.219 25 H -0.200 1.200 26 N -0.206 5.206 27 H 0.126 0.874 28 H 0.123 0.877 29 H 0.118 0.882 30 H 0.236 0.764 31 H 0.257 0.743 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.085 0.915 35 H 0.122 0.878 36 H 0.089 0.911 37 H 0.102 0.898 38 H 0.057 0.943 39 H 0.011 0.989 40 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -12.236 22.344 2.092 25.560 hybrid contribution 2.106 -0.749 -0.614 2.318 sum -10.130 21.595 1.478 23.898 Atomic orbital electron populations 1.20832 0.81789 1.05931 1.05745 1.24186 1.00225 0.82228 0.88560 1.68469 1.09039 1.30194 1.13286 1.23986 0.88996 0.97774 0.87887 1.23044 0.89621 0.96415 1.06305 1.98448 1.05038 1.98619 1.96004 1.21424 0.90425 0.93435 0.95819 1.18084 0.86634 0.83679 0.78112 1.90885 1.13667 1.87040 1.49865 1.45727 1.11483 1.04462 1.71867 1.21852 0.96073 0.81636 1.00211 1.21317 0.91998 0.84658 0.97913 0.93274 1.22638 0.99961 0.96749 0.95861 1.22892 0.97162 0.95697 1.01338 1.21295 0.91720 0.94591 0.87620 1.44740 1.52030 1.11454 1.25216 1.19255 1.13317 1.09687 0.94846 0.90653 1.25644 1.00644 0.99254 0.99541 1.70130 1.42323 1.19499 1.27276 0.85278 0.78961 0.76990 0.78887 1.20892 1.21854 1.19977 1.68355 1.06542 1.31980 1.13740 0.87445 0.87696 0.88169 0.76351 0.74272 0.93674 0.93930 0.91511 0.87840 0.91125 0.89789 0.94328 0.98946 0.94270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.76 10.31 71.24 0.73 -0.03 16 2 C 0.31 5.42 7.64 138.79 1.06 6.48 16 3 N -0.50 -8.41 10.31 -187.77 -1.94 -10.35 16 4 C 0.18 2.95 11.14 84.83 0.95 3.89 16 5 C -0.12 -2.73 6.40 22.79 0.15 -2.58 16 6 Cl -0.01 -0.25 26.25 -2.72 -0.07 -0.32 16 7 C 0.14 3.56 6.79 41.98 0.29 3.84 16 8 C 0.55 17.89 7.82 86.94 0.68 18.57 16 9 O -0.54 -21.02 14.14 -3.70 -0.05 -21.07 16 10 N -0.68 -20.98 5.40 -465.47 -2.51 -23.49 16 11 C 0.13 4.97 5.09 86.38 0.44 5.41 16 12 C 0.15 5.71 3.22 45.34 0.15 5.85 16 13 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 14 C -0.11 -3.46 6.07 31.83 0.19 -3.27 16 15 C -0.13 -4.53 7.10 32.03 0.23 -4.30 16 16 C 0.17 8.34 5.42 86.86 0.47 8.82 16 17 N -0.61 -30.59 3.13 -668.26 -2.09 -32.67 16 18 C -0.24 -13.52 9.73 84.03 0.82 -12.70 16 19 H 0.08 4.10 7.83 -2.91 -0.02 4.07 16 20 C -0.06 -3.26 5.47 84.86 0.46 -2.79 16 21 N -0.94 -56.88 10.54 21.65 0.23 -56.65 16 22 Si 0.97 46.50 29.55 68.60 2.03 48.53 16 23 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 24 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 25 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 26 N -0.49 -10.61 9.59 -177.05 -1.70 -12.31 16 27 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.22 1.80 8.06 -2.91 -0.02 1.78 16 31 H 0.42 10.54 7.63 -92.71 -0.71 9.83 16 32 H 0.04 1.94 8.04 -2.39 -0.02 1.92 16 33 H 0.04 1.92 7.86 -2.39 -0.02 1.90 16 34 H 0.07 2.01 7.78 -2.39 -0.02 1.99 16 35 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 36 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 37 H 0.08 2.48 8.14 -2.38 -0.02 2.46 16 38 H 0.04 2.11 6.86 -2.39 -0.02 2.09 16 39 H -0.01 -0.40 8.08 -2.39 -0.02 -0.42 16 40 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 Total: -1.00 -72.03 349.88 0.87 -71.15 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: 0.37 Total: 9.99 kcal Atomic # 6 Polarization: 20.58 SS G_CDS: 6.61 Total: 27.19 kcal Atomic # 7 Polarization: -127.46 SS G_CDS: -8.01 Total: -135.47 kcal Atomic # 8 Polarization: -21.02 SS G_CDS: -0.05 Total: -21.07 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 2.03 Total: 48.53 kcal Atomic # 17 Polarization: -0.25 SS G_CDS: -0.07 Total: -0.32 kcal Total: -72.03 0.87 -71.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028180973.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.909 kcal (2) G-P(sol) polarization free energy of solvation -72.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds