Wall clock time and date at job start Tue Mar 31 2020 14:00:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31928 * 119.02242 * 2 1 4 4 C 1.32136 * 121.06132 * 179.68094 * 3 2 1 5 5 C 1.38986 * 119.12233 * 0.61553 * 4 3 2 6 6 Cl 1.73599 * 120.88909 * 179.69807 * 5 4 3 7 7 C 1.39643 * 118.22480 * 359.42407 * 5 4 3 8 8 C 1.48370 * 120.56151 * 180.29732 * 7 5 4 9 9 O 1.21494 * 120.00074 * 359.97438 * 8 7 5 10 10 N 1.34774 * 120.00229 * 180.02562 * 8 7 5 11 11 C 1.46491 * 120.00429 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.47387 * 179.97438 * 11 10 8 13 13 H 1.09007 * 110.63739 * 308.13874 * 12 11 10 14 14 C 1.55160 * 110.71904 * 185.00092 * 12 11 10 15 15 C 1.54910 * 101.58054 * 206.13274 * 14 12 11 16 16 N 1.47431 * 104.83032 * 37.00679 * 15 14 12 17 17 C 1.36935 * 125.64840 * 155.83733 * 16 15 14 18 18 H 1.07997 * 120.00192 * 180.02562 * 17 16 15 19 19 C 1.38817 * 119.99938 * 0.02562 * 17 16 15 20 20 N 1.31625 * 119.99860 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00119 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47235 * 90.00147 * 21 19 17 23 23 H 1.48500 * 109.47112 * 210.00180 * 21 19 17 24 24 H 1.48498 * 109.47256 * 330.00194 * 21 19 17 25 25 C 1.47018 * 108.70482 * 335.87233 * 16 15 14 26 26 N 1.31523 * 119.01892 * 180.02562 * 2 1 3 27 27 H 1.09002 * 109.47004 * 269.97721 * 1 2 3 28 28 H 1.08998 * 109.47219 * 29.98168 * 1 2 3 29 29 H 1.08998 * 109.47179 * 149.97705 * 1 2 3 30 30 H 1.07996 * 120.43775 * 180.33623 * 4 3 2 31 31 H 0.97005 * 119.99616 * 359.97438 * 10 8 7 32 32 H 1.09000 * 109.46996 * 300.00388 * 11 10 8 33 33 H 1.09004 * 109.47527 * 59.99588 * 11 10 8 34 34 H 1.08998 * 111.00525 * 324.20728 * 14 12 11 35 35 H 1.08996 * 111.00490 * 88.02370 * 14 12 11 36 36 H 1.08994 * 110.37039 * 155.84687 * 15 14 12 37 37 H 1.08999 * 110.36716 * 278.17632 * 15 14 12 38 38 H 0.97003 * 119.99805 * 180.02562 * 20 19 17 39 39 H 1.08999 * 109.88329 * 241.64171 * 25 16 15 40 40 H 1.08999 * 109.88573 * 120.47504 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1470 1.1536 0.0000 4 6 3.4675 1.2006 0.0063 5 6 4.1868 0.0114 0.0000 6 17 5.9227 0.0197 0.0000 7 6 3.4757 -1.1905 -0.0005 8 6 4.1911 -2.4903 -0.0005 9 8 5.4058 -2.5152 -0.0005 10 7 3.4935 -3.6435 -0.0015 11 6 4.1998 -4.9269 -0.0009 12 6 3.1820 -6.0692 -0.0016 13 1 2.4554 -5.9369 0.8002 14 6 3.8961 -7.4408 0.1255 15 6 2.8770 -8.3865 -0.5578 16 7 2.3258 -7.6017 -1.6775 17 6 1.7662 -8.1188 -2.8153 18 1 1.3897 -7.4568 -3.5809 19 6 1.6827 -9.4941 -2.9844 20 7 2.1411 -10.3010 -2.0510 21 14 0.9199 -10.1996 -4.5367 22 1 1.9743 -10.3869 -5.5654 23 1 0.2911 -11.5091 -4.2283 24 1 -0.1122 -9.2637 -5.0506 25 6 2.4774 -6.1719 -1.3707 26 7 2.1450 -1.1501 -0.0005 27 1 -0.3633 -0.0004 1.0277 28 1 -0.3633 0.8901 -0.5135 29 1 -0.3633 -0.8898 -0.5142 30 1 3.9811 2.1506 0.0117 31 1 2.5237 -3.6236 -0.0018 32 1 4.8262 -4.9972 -0.8902 33 1 4.8242 -4.9976 0.8897 34 1 4.8459 -7.4379 -0.4094 35 1 4.0401 -7.7109 1.1716 36 1 3.3789 -9.2792 -0.9310 37 1 2.0854 -8.6591 0.1402 38 1 2.0831 -11.2621 -2.1694 39 1 1.4972 -5.6978 -1.3197 40 1 3.0847 -5.6906 -2.1372 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028847965.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:00:12 Heat of formation + Delta-G solvation = 39.784826 kcal Electronic energy + Delta-G solvation = -24442.142949 eV Core-core repulsion = 20705.090714 eV Total energy + Delta-G solvation = -3737.052235 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.109 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.73638 -39.59107 -37.69445 -37.01987 -34.86487 -34.35583 -33.42639 -32.47833 -29.87373 -28.80741 -28.39154 -26.43513 -25.28188 -23.88423 -23.01710 -21.10376 -20.12474 -19.77049 -18.67822 -18.02638 -16.85228 -16.51032 -16.21061 -15.91457 -15.56729 -15.24177 -14.76074 -14.50390 -13.94695 -13.86130 -13.58970 -13.41241 -12.85024 -12.81519 -12.51216 -12.18585 -11.89541 -11.79872 -11.77137 -11.65318 -11.52399 -11.34596 -10.96321 -10.80517 -10.58523 -10.36464 -10.12639 -10.02454 -9.83167 -9.60131 -9.59562 -9.45690 -9.04857 -8.65363 -6.83751 -5.65902 -3.07462 -0.07030 0.27053 1.58753 2.46693 2.74089 3.27753 3.33362 3.39838 3.44763 3.46671 3.46920 4.01073 4.19315 4.48183 4.52593 4.89606 5.07570 5.14813 5.22167 5.27138 5.36327 5.38856 5.51685 5.67436 5.77141 5.85726 6.01381 6.06920 6.14977 6.32017 6.34088 6.55500 6.57074 6.70362 6.89549 7.29340 7.46981 7.50710 7.62456 7.84969 7.98358 8.36005 9.21827 9.82738 10.47463 11.38126 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.017299 B = 0.002724 C = 0.002511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.164744 B =10275.685212 C =11149.523498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.320 3.680 3 N -0.493 5.493 4 C 0.167 3.833 5 C -0.111 4.111 6 Cl 0.001 6.999 7 C 0.151 3.849 8 C 0.559 3.441 9 O -0.507 6.507 10 N -0.697 5.697 11 C 0.131 3.869 12 C -0.115 4.115 13 H 0.078 0.922 14 C -0.135 4.135 15 C 0.152 3.848 16 N -0.605 5.605 17 C -0.223 4.223 18 H 0.077 0.923 19 C -0.012 4.012 20 N -0.922 5.922 21 Si 0.914 3.086 22 H -0.289 1.289 23 H -0.290 1.290 24 H -0.282 1.282 25 C 0.141 3.859 26 N -0.480 5.480 27 H 0.092 0.908 28 H 0.090 0.910 29 H 0.093 0.907 30 H 0.185 0.815 31 H 0.412 0.588 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.063 0.937 35 H 0.061 0.939 36 H 0.107 0.893 37 H 0.012 0.988 38 H 0.252 0.748 39 H 0.020 0.980 40 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.594 22.788 7.610 24.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.053 3.947 3 N -0.208 5.208 4 C -0.002 4.002 5 C -0.144 4.144 6 Cl 0.030 6.970 7 C 0.002 3.998 8 C 0.341 3.659 9 O -0.381 6.381 10 N -0.348 5.348 11 C 0.008 3.992 12 C -0.134 4.134 13 H 0.096 0.904 14 C -0.174 4.174 15 C 0.027 3.973 16 N -0.331 5.331 17 C -0.351 4.351 18 H 0.095 0.905 19 C -0.207 4.207 20 N -0.571 5.571 21 Si 0.745 3.255 22 H -0.216 1.216 23 H -0.216 1.216 24 H -0.208 1.208 25 C 0.015 3.985 26 N -0.197 5.197 27 H 0.110 0.890 28 H 0.109 0.891 29 H 0.112 0.888 30 H 0.202 0.798 31 H 0.248 0.752 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.125 0.875 37 H 0.030 0.970 38 H 0.063 0.937 39 H 0.037 0.963 40 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 1.584 22.473 7.500 23.744 hybrid contribution 0.132 -0.236 -0.759 0.806 sum 1.715 22.237 6.741 23.299 Atomic orbital electron populations 1.20672 0.84428 1.05000 1.04515 1.23429 0.98729 0.82701 0.89823 1.68333 1.08963 1.30342 1.13176 1.23434 0.89216 0.97430 0.90074 1.22892 0.90020 0.95966 1.05503 1.98447 1.04017 1.98605 1.95909 1.21731 0.89583 0.94359 0.94174 1.17631 0.86738 0.82744 0.78766 1.90889 1.12022 1.86483 1.48705 1.45951 1.11431 1.05286 1.72169 1.21606 0.94872 0.80202 1.02541 1.22457 0.97202 0.94512 0.99241 0.90405 1.23011 0.99862 0.94375 1.00152 1.21936 0.92687 0.94923 0.87747 1.44505 1.70620 0.99095 1.18842 1.19078 1.31302 0.90385 0.94322 0.90544 1.24789 1.01597 0.95865 0.98452 1.69797 1.51766 1.02464 1.33093 0.86070 0.78685 0.78408 0.82329 1.21588 1.21648 1.20752 1.21333 0.96396 0.88141 0.92598 1.68356 1.07425 1.31036 1.12900 0.88974 0.89088 0.88788 0.79801 0.75183 0.90696 0.91114 0.91782 0.92062 0.87508 0.96978 0.93730 0.96258 0.95837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.56 10.31 36.00 0.37 -0.19 16 2 C 0.32 3.13 7.64 -157.31 -1.20 1.93 16 3 N -0.49 -4.72 10.31 -10.70 -0.11 -4.83 16 4 C 0.17 1.44 11.14 -17.14 -0.19 1.25 16 5 C -0.11 -1.20 6.40 -38.78 -0.25 -1.44 16 6 Cl 0.00 0.01 26.25 -51.86 -1.36 -1.35 16 7 C 0.15 1.86 6.80 -82.61 -0.56 1.30 16 8 C 0.56 7.86 7.82 -12.09 -0.09 7.76 16 9 O -0.51 -8.14 14.15 5.37 0.08 -8.06 16 10 N -0.70 -9.36 5.46 -61.08 -0.33 -9.70 16 11 C 0.13 1.89 5.02 -4.05 -0.02 1.86 16 12 C -0.11 -1.88 2.96 -88.78 -0.26 -2.15 16 13 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 14 C -0.13 -2.45 6.53 -24.58 -0.16 -2.61 16 15 C 0.15 3.63 5.89 -2.53 -0.01 3.61 16 16 N -0.60 -15.38 3.39 -170.08 -0.58 -15.96 16 17 C -0.22 -6.21 10.27 -15.06 -0.15 -6.36 16 18 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 19 C -0.01 -0.33 5.49 -17.43 -0.10 -0.42 16 20 N -0.92 -26.80 10.09 55.49 0.56 -26.24 16 21 Si 0.91 22.06 29.55 -169.99 -5.02 17.03 16 22 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 25 C 0.14 2.87 6.75 -3.07 -0.02 2.85 16 26 N -0.48 -5.47 9.59 -7.31 -0.07 -5.54 16 27 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.19 0.93 8.06 -52.49 -0.42 0.51 16 31 H 0.41 5.15 7.86 -40.82 -0.32 4.83 16 32 H 0.07 1.18 7.93 -51.93 -0.41 0.77 16 33 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.06 1.16 8.05 -51.93 -0.42 0.74 16 35 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.11 2.89 5.87 -51.93 -0.30 2.58 16 37 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 39 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.02 0.49 7.68 -51.93 -0.40 0.09 16 LS Contribution 349.86 15.07 5.27 5.27 Total: -1.00 -32.04 349.86 -9.43 -41.47 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -5.21 Total: 0.51 kcal Atomic # 6 Polarization: 10.04 SS G_CDS: -2.66 Total: 7.39 kcal Atomic # 7 Polarization: -61.73 SS G_CDS: -0.53 Total: -62.26 kcal Atomic # 8 Polarization: -8.14 SS G_CDS: 0.08 Total: -8.06 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.03 kcal Atomic # 17 Polarization: 0.01 SS G_CDS: -1.36 Total: -1.35 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.04 -9.43 -41.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028847965.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.257 kcal (2) G-P(sol) polarization free energy of solvation -32.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.473 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds