Wall clock time and date at job start Tue Mar 31 2020 14:00:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31928 * 119.02242 * 2 1 4 4 C 1.32136 * 121.06132 * 179.68094 * 3 2 1 5 5 C 1.38986 * 119.12233 * 0.61553 * 4 3 2 6 6 Cl 1.73599 * 120.88909 * 179.69807 * 5 4 3 7 7 C 1.39643 * 118.22480 * 359.42407 * 5 4 3 8 8 C 1.48370 * 120.56151 * 180.29732 * 7 5 4 9 9 O 1.21494 * 120.00074 * 359.97438 * 8 7 5 10 10 N 1.34774 * 120.00229 * 180.02562 * 8 7 5 11 11 C 1.46491 * 120.00429 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.47387 * 179.97438 * 11 10 8 13 13 H 1.09007 * 110.63739 * 308.13874 * 12 11 10 14 14 C 1.55160 * 110.71904 * 185.00092 * 12 11 10 15 15 C 1.54910 * 101.58054 * 206.13274 * 14 12 11 16 16 N 1.47431 * 104.83032 * 37.00679 * 15 14 12 17 17 C 1.36935 * 125.64840 * 155.83733 * 16 15 14 18 18 H 1.07997 * 120.00192 * 180.02562 * 17 16 15 19 19 C 1.38817 * 119.99938 * 0.02562 * 17 16 15 20 20 N 1.31625 * 119.99860 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00119 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47235 * 90.00147 * 21 19 17 23 23 H 1.48500 * 109.47112 * 210.00180 * 21 19 17 24 24 H 1.48498 * 109.47256 * 330.00194 * 21 19 17 25 25 C 1.47018 * 108.70482 * 335.87233 * 16 15 14 26 26 N 1.31523 * 119.01892 * 180.02562 * 2 1 3 27 27 H 1.09002 * 109.47004 * 269.97721 * 1 2 3 28 28 H 1.08998 * 109.47219 * 29.98168 * 1 2 3 29 29 H 1.08998 * 109.47179 * 149.97705 * 1 2 3 30 30 H 1.07996 * 120.43775 * 180.33623 * 4 3 2 31 31 H 0.97005 * 119.99616 * 359.97438 * 10 8 7 32 32 H 1.09000 * 109.46996 * 300.00388 * 11 10 8 33 33 H 1.09004 * 109.47527 * 59.99588 * 11 10 8 34 34 H 1.08998 * 111.00525 * 324.20728 * 14 12 11 35 35 H 1.08996 * 111.00490 * 88.02370 * 14 12 11 36 36 H 1.08994 * 110.37039 * 155.84687 * 15 14 12 37 37 H 1.08999 * 110.36716 * 278.17632 * 15 14 12 38 38 H 0.97003 * 119.99805 * 180.02562 * 20 19 17 39 39 H 1.08999 * 109.88329 * 241.64171 * 25 16 15 40 40 H 1.08999 * 109.88573 * 120.47504 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1470 1.1536 0.0000 4 6 3.4675 1.2006 0.0063 5 6 4.1868 0.0114 0.0000 6 17 5.9227 0.0197 0.0000 7 6 3.4757 -1.1905 -0.0005 8 6 4.1911 -2.4903 -0.0005 9 8 5.4058 -2.5152 -0.0005 10 7 3.4935 -3.6435 -0.0015 11 6 4.1998 -4.9269 -0.0009 12 6 3.1820 -6.0692 -0.0016 13 1 2.4554 -5.9369 0.8002 14 6 3.8961 -7.4408 0.1255 15 6 2.8770 -8.3865 -0.5578 16 7 2.3258 -7.6017 -1.6775 17 6 1.7662 -8.1188 -2.8153 18 1 1.3897 -7.4568 -3.5809 19 6 1.6827 -9.4941 -2.9844 20 7 2.1411 -10.3010 -2.0510 21 14 0.9199 -10.1996 -4.5367 22 1 1.9743 -10.3869 -5.5654 23 1 0.2911 -11.5091 -4.2283 24 1 -0.1122 -9.2637 -5.0506 25 6 2.4774 -6.1719 -1.3707 26 7 2.1450 -1.1501 -0.0005 27 1 -0.3633 -0.0004 1.0277 28 1 -0.3633 0.8901 -0.5135 29 1 -0.3633 -0.8898 -0.5142 30 1 3.9811 2.1506 0.0117 31 1 2.5237 -3.6236 -0.0018 32 1 4.8262 -4.9972 -0.8902 33 1 4.8242 -4.9976 0.8897 34 1 4.8459 -7.4379 -0.4094 35 1 4.0401 -7.7109 1.1716 36 1 3.3789 -9.2792 -0.9310 37 1 2.0854 -8.6591 0.1402 38 1 2.0831 -11.2621 -2.1694 39 1 1.4972 -5.6978 -1.3197 40 1 3.0847 -5.6906 -2.1372 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028847965.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:00:12 Heat of formation + Delta-G solvation = 18.686793 kcal Electronic energy + Delta-G solvation = -24443.057828 eV Core-core repulsion = 20705.090714 eV Total energy + Delta-G solvation = -3737.967114 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.109 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.52794 -40.68782 -39.26157 -37.84805 -36.17332 -35.26703 -34.26870 -34.11414 -31.64918 -29.97470 -29.43523 -27.72150 -26.75795 -25.18019 -24.00899 -22.34594 -21.71430 -21.21344 -19.62344 -18.98898 -18.73122 -17.40304 -17.23706 -16.96971 -16.79910 -16.49058 -16.19855 -15.77608 -15.53481 -14.85093 -14.58984 -14.39720 -14.27330 -13.93105 -13.54715 -13.40618 -13.28920 -13.16353 -12.88304 -12.83129 -12.68615 -12.61758 -12.55224 -12.16694 -12.01608 -11.87251 -11.82983 -11.59251 -11.50054 -11.31355 -10.73836 -10.41211 -10.40041 -10.13983 -8.87606 -7.77291 -5.21348 -0.91877 -0.45237 0.78699 1.46600 1.48365 1.50920 1.56948 1.74437 2.44036 2.49699 2.56236 2.79343 3.18224 3.32124 3.37716 3.62249 3.77056 3.83150 3.96732 4.06531 4.25276 4.44410 4.64952 4.68597 4.71441 4.73093 4.78027 4.78807 4.91074 5.03383 5.13640 5.22549 5.24487 5.38193 5.42248 5.47928 5.67346 5.83429 6.28630 6.32908 6.65846 6.92657 7.11860 7.79531 8.42829 9.24534 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.017299 B = 0.002724 C = 0.002511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.164744 B =10275.685212 C =11149.523498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.314 3.686 3 N -0.496 5.496 4 C 0.180 3.820 5 C -0.118 4.118 6 Cl -0.005 7.005 7 C 0.133 3.867 8 C 0.559 3.441 9 O -0.531 6.531 10 N -0.693 5.693 11 C 0.143 3.857 12 C -0.094 4.094 13 H 0.096 0.904 14 C -0.121 4.121 15 C 0.152 3.848 16 N -0.628 5.628 17 C -0.240 4.240 18 H 0.078 0.922 19 C -0.067 4.067 20 N -0.948 5.948 21 Si 0.979 3.021 22 H -0.286 1.286 23 H -0.293 1.293 24 H -0.270 1.270 25 C 0.138 3.862 26 N -0.492 5.492 27 H 0.107 0.893 28 H 0.104 0.896 29 H 0.095 0.905 30 H 0.220 0.780 31 H 0.417 0.583 32 H 0.062 0.938 33 H 0.085 0.915 34 H 0.065 0.935 35 H 0.091 0.909 36 H 0.071 0.929 37 H -0.009 1.009 38 H 0.247 0.753 39 H 0.025 0.975 40 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.055 24.930 7.993 26.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.048 3.952 3 N -0.211 5.211 4 C 0.011 3.989 5 C -0.151 4.151 6 Cl 0.024 6.976 7 C -0.015 4.015 8 C 0.342 3.658 9 O -0.407 6.407 10 N -0.345 5.345 11 C 0.019 3.981 12 C -0.114 4.114 13 H 0.114 0.886 14 C -0.160 4.160 15 C 0.027 3.973 16 N -0.354 5.354 17 C -0.369 4.369 18 H 0.096 0.904 19 C -0.259 4.259 20 N -0.598 5.598 21 Si 0.807 3.193 22 H -0.213 1.213 23 H -0.219 1.219 24 H -0.195 1.195 25 C 0.013 3.987 26 N -0.210 5.210 27 H 0.125 0.875 28 H 0.123 0.877 29 H 0.114 0.886 30 H 0.237 0.763 31 H 0.254 0.746 32 H 0.080 0.920 33 H 0.104 0.896 34 H 0.083 0.917 35 H 0.110 0.890 36 H 0.089 0.911 37 H 0.008 0.992 38 H 0.057 0.943 39 H 0.043 0.957 40 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 1.027 24.644 7.889 25.897 hybrid contribution 0.259 -0.825 -0.879 1.233 sum 1.286 23.819 7.010 24.863 Atomic orbital electron populations 1.20815 0.82250 1.05740 1.05660 1.24076 1.00058 0.82349 0.88759 1.68461 1.09275 1.30105 1.13266 1.24008 0.88915 0.98006 0.87943 1.23013 0.89788 0.96257 1.06063 1.98443 1.04551 1.98613 1.95978 1.21533 0.90253 0.93922 0.95833 1.17879 0.86559 0.83374 0.78024 1.90870 1.13040 1.86970 1.49822 1.45857 1.11635 1.04914 1.72072 1.21373 0.94071 0.79944 1.02665 1.22291 0.97380 0.94312 0.97376 0.88581 1.22847 0.98156 0.93745 1.01226 1.21742 0.93021 0.95228 0.87342 1.44826 1.70572 1.01442 1.18591 1.19442 1.31217 0.90875 0.95373 0.90392 1.25622 1.02562 0.96285 1.01479 1.70054 1.52815 1.02215 1.34706 0.85064 0.77968 0.77436 0.78785 1.21327 1.21915 1.19535 1.21492 0.97038 0.85464 0.94704 1.68364 1.06971 1.31956 1.13719 0.87473 0.87725 0.88628 0.76330 0.74585 0.91992 0.89636 0.91673 0.89037 0.91068 0.99150 0.94324 0.95667 0.96252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.91 10.31 71.24 0.73 -0.18 16 2 C 0.31 5.52 7.64 138.79 1.06 6.58 16 3 N -0.50 -8.29 10.31 -187.77 -1.94 -10.23 16 4 C 0.18 2.67 11.14 84.83 0.94 3.62 16 5 C -0.12 -2.37 6.40 22.79 0.15 -2.23 16 6 Cl 0.00 -0.10 26.25 -2.72 -0.07 -0.17 16 7 C 0.13 3.12 6.80 41.99 0.29 3.41 16 8 C 0.56 15.16 7.82 86.94 0.68 15.84 16 9 O -0.53 -16.67 14.15 -3.70 -0.05 -16.72 16 10 N -0.69 -17.66 5.46 -465.47 -2.54 -20.21 16 11 C 0.14 3.88 5.02 86.38 0.43 4.31 16 12 C -0.09 -2.94 2.96 -9.60 -0.03 -2.97 16 13 H 0.10 2.70 8.14 -2.38 -0.02 2.68 16 14 C -0.12 -4.25 6.53 31.99 0.21 -4.04 16 15 C 0.15 7.37 5.89 86.85 0.51 7.88 16 16 N -0.63 -32.33 3.39 -692.00 -2.35 -34.68 16 17 C -0.24 -13.57 10.27 84.03 0.86 -12.71 16 18 H 0.08 4.24 7.83 -2.91 -0.02 4.22 16 19 C -0.07 -3.82 5.49 84.86 0.47 -3.35 16 20 N -0.95 -56.59 10.09 21.65 0.22 -56.37 16 21 Si 0.98 45.84 29.55 68.60 2.03 47.87 16 22 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 23 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16 24 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 25 C 0.14 5.53 6.75 86.73 0.59 6.12 16 26 N -0.49 -10.51 9.59 -177.05 -1.70 -12.21 16 27 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.22 1.50 8.06 -2.91 -0.02 1.48 16 31 H 0.42 9.80 7.86 -92.70 -0.73 9.07 16 32 H 0.06 1.88 7.93 -2.39 -0.02 1.86 16 33 H 0.09 2.14 8.14 -2.38 -0.02 2.12 16 34 H 0.06 2.29 8.05 -2.39 -0.02 2.27 16 35 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 36 H 0.07 3.99 5.87 -2.39 -0.01 3.98 16 37 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 38 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 39 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.02 0.80 7.68 -2.39 -0.02 0.78 16 Total: -1.00 -70.40 349.86 0.84 -69.57 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: 0.35 Total: 10.88 kcal Atomic # 6 Polarization: 15.39 SS G_CDS: 6.89 Total: 22.28 kcal Atomic # 7 Polarization: -125.39 SS G_CDS: -8.31 Total: -133.70 kcal Atomic # 8 Polarization: -16.67 SS G_CDS: -0.05 Total: -16.72 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal Atomic # 17 Polarization: -0.10 SS G_CDS: -0.07 Total: -0.17 kcal Total: -70.40 0.84 -69.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028847965.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.256 kcal (2) G-P(sol) polarization free energy of solvation -70.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.570 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds