Wall clock time and date at job start Tue Mar 31 2020 13:51:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.34232 * 126.27986 * 2 1 4 4 H 0.96995 * 125.73447 * 0.02562 * 3 2 1 5 5 N 1.39933 * 108.52006 * 180.02562 * 3 2 1 6 6 C 1.30527 * 108.89642 * 359.75238 * 5 3 2 7 7 Cl 1.73604 * 126.00441 * 180.26035 * 6 5 3 8 8 C 1.38073 * 126.28082 * 180.02562 * 2 1 3 9 9 C 1.47380 * 126.42137 * 359.94554 * 8 2 1 10 10 O 1.21615 * 120.00372 * 90.00146 * 9 8 2 11 11 N 1.34774 * 120.00365 * 269.99788 * 9 8 2 12 12 C 1.47162 * 120.71627 * 180.02562 * 11 9 8 13 13 C 1.53881 * 108.03240 * 132.73475 * 12 11 9 14 14 H 1.09010 * 112.09625 * 181.91485 * 13 12 11 15 15 C 1.54542 * 108.37271 * 306.25310 * 13 12 11 16 16 C 1.54827 * 104.74404 * 89.16980 * 15 13 12 17 17 C 1.54550 * 104.74433 * 0.02562 * 16 15 13 18 18 H 1.08999 * 112.68166 * 146.80338 * 17 16 15 19 19 C 1.47162 * 120.70564 * 359.97438 * 11 9 8 20 20 N 1.48306 * 107.20904 * 58.36392 * 13 12 11 21 21 C 1.36940 * 128.07917 * 106.09414 * 20 13 12 22 22 H 1.07998 * 119.99888 * 165.13522 * 21 20 13 23 23 C 1.38813 * 119.99801 * 345.13927 * 21 20 13 24 24 N 1.31614 * 120.00163 * 350.71818 * 23 21 20 25 25 Si 1.86800 * 119.99833 * 170.72098 * 23 21 20 26 26 H 1.48498 * 109.46912 * 179.97438 * 25 23 21 27 27 H 1.48498 * 109.46964 * 299.99966 * 25 23 21 28 28 H 1.48496 * 109.47049 * 59.99894 * 25 23 21 29 29 H 1.08996 * 109.47404 * 269.97584 * 1 2 3 30 30 H 1.09002 * 109.47614 * 29.97886 * 1 2 3 31 31 H 1.09005 * 109.47111 * 149.97832 * 1 2 3 32 32 H 1.09008 * 109.74654 * 13.10395 * 12 11 9 33 33 H 1.08999 * 109.79524 * 252.39815 * 12 11 9 34 34 H 1.09004 * 110.36967 * 208.14001 * 15 13 12 35 35 H 1.09008 * 110.36410 * 330.45615 * 15 13 12 36 36 H 1.08996 * 110.31050 * 241.25204 * 16 15 13 37 37 H 1.09005 * 110.61026 * 118.91357 * 16 15 13 38 38 H 1.08998 * 109.75646 * 346.89919 * 19 11 9 39 39 H 1.09006 * 109.74942 * 107.63263 * 19 11 9 40 40 H 0.96994 * 120.00282 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3013 1.0821 0.0000 4 1 2.0018 2.0046 0.0004 5 7 3.6339 0.6553 -0.0006 6 6 3.6598 -0.6497 0.0044 7 17 5.0842 -1.6422 0.0122 8 6 2.3240 -1.1130 -0.0005 9 6 1.8858 -2.5202 0.0000 10 8 1.7042 -3.1009 -1.0530 11 7 1.6863 -3.1635 1.1674 12 6 1.2494 -4.5686 1.1862 13 6 2.1384 -5.3307 2.1846 14 1 1.8920 -6.3917 2.2262 15 6 3.6165 -5.0896 1.8031 16 6 4.0202 -3.8118 2.5786 17 6 2.7474 -3.4040 3.3546 18 1 2.9713 -2.9427 4.3164 19 6 1.9020 -2.4761 2.4506 20 7 1.9860 -4.6679 3.5025 21 6 1.2979 -5.1157 4.5985 22 1 1.4620 -4.6584 5.5630 23 6 0.3895 -6.1574 4.4697 24 7 0.0526 -6.5928 3.2743 25 14 -0.3548 -6.9412 5.9932 26 1 -1.2883 -8.0225 5.5877 27 1 0.7273 -7.5109 6.8357 28 1 -1.0955 -5.9130 6.7673 29 1 -0.3634 -0.0004 1.0276 30 1 -0.3634 0.8902 -0.5135 31 1 -0.3633 -0.8898 -0.5142 32 1 1.3578 -5.0014 0.1916 33 1 0.2076 -4.6271 1.5015 34 1 4.2310 -5.9349 2.1131 35 1 3.7093 -4.9257 0.7294 36 1 4.3102 -3.0235 1.8839 37 1 4.8346 -4.0245 3.2712 38 1 2.4369 -1.5414 2.2825 39 1 0.9420 -2.2718 2.9249 40 1 -0.5824 -7.3204 3.1843 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029334080.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:59 Heat of formation + Delta-G solvation = 73.955828 kcal Electronic energy + Delta-G solvation = -26805.563306 eV Core-core repulsion = 23069.992837 eV Total energy + Delta-G solvation = -3735.570469 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.109 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.62510 -39.63399 -37.53419 -36.84483 -33.68542 -32.80016 -32.33004 -31.42560 -30.34567 -29.20486 -27.71999 -26.03408 -23.92980 -23.75974 -22.04116 -21.92480 -19.67951 -19.42777 -18.55763 -17.78160 -16.70560 -16.02443 -15.51780 -15.31015 -15.17713 -14.85906 -14.61721 -13.96733 -13.70338 -13.32030 -13.11617 -13.00708 -12.89021 -12.66769 -12.50538 -12.10098 -11.81552 -11.76653 -11.60288 -11.42362 -10.98285 -10.85317 -10.83104 -10.70117 -10.29277 -10.03179 -9.80926 -9.65631 -9.52127 -9.47798 -9.40469 -8.75999 -8.71177 -8.01609 -6.81513 -5.82621 -3.17727 1.41324 1.42901 2.15735 2.78651 3.00293 3.36156 3.42151 3.42565 3.73951 4.39602 4.42871 4.69031 4.89894 5.14259 5.24419 5.26441 5.34402 5.58232 5.63831 5.66948 5.75508 5.82448 5.84732 5.91897 6.00978 6.27169 6.40127 6.46190 6.61326 6.70926 6.75913 6.83973 6.85405 6.94340 7.03450 7.16631 7.33467 7.52466 7.72064 8.10621 8.16523 8.72672 9.07256 9.69345 10.46773 11.30143 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.018838 B = 0.004603 C = 0.004263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.972369 B = 6082.073977 C = 6566.299755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.136 3.864 3 N -0.451 5.451 4 H 0.446 0.554 5 N -0.281 5.281 6 C 0.158 3.842 7 Cl 0.024 6.976 8 C -0.251 4.251 9 C 0.584 3.416 10 O -0.549 6.549 11 N -0.577 5.577 12 C 0.112 3.888 13 C 0.168 3.832 14 H 0.119 0.881 15 C -0.135 4.135 16 C -0.129 4.129 17 C 0.135 3.865 18 H 0.076 0.924 19 C 0.100 3.900 20 N -0.584 5.584 21 C -0.226 4.226 22 H 0.075 0.925 23 C -0.002 4.002 24 N -0.913 5.913 25 Si 0.911 3.089 26 H -0.290 1.290 27 H -0.286 1.286 28 H -0.286 1.286 29 H 0.092 0.908 30 H 0.079 0.921 31 H 0.094 0.906 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.052 0.948 35 H 0.053 0.947 36 H 0.060 0.940 37 H 0.053 0.947 38 H 0.060 0.940 39 H 0.064 0.936 40 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.450 13.920 -5.186 15.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.004 3.996 3 N -0.160 5.160 4 H 0.292 0.708 5 N -0.106 5.106 6 C -0.034 4.034 7 Cl 0.052 6.948 8 C -0.267 4.267 9 C 0.369 3.631 10 O -0.427 6.427 11 N -0.308 5.308 12 C -0.010 4.010 13 C 0.060 3.940 14 H 0.136 0.864 15 C -0.174 4.174 16 C -0.168 4.168 17 C 0.026 3.974 18 H 0.094 0.906 19 C -0.026 4.026 20 N -0.305 5.305 21 C -0.354 4.354 22 H 0.093 0.907 23 C -0.199 4.199 24 N -0.559 5.559 25 Si 0.741 3.259 26 H -0.216 1.216 27 H -0.212 1.212 28 H -0.212 1.212 29 H 0.111 0.889 30 H 0.098 0.902 31 H 0.113 0.887 32 H 0.088 0.912 33 H 0.100 0.900 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.078 0.922 39 H 0.082 0.918 40 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 3.989 14.314 -5.612 15.884 hybrid contribution -0.840 -0.526 0.823 1.288 sum 3.148 13.788 -4.789 14.932 Atomic orbital electron populations 1.20611 0.85763 1.04850 1.04506 1.21394 0.94839 0.85963 0.97410 1.45777 1.03016 1.08478 1.58776 0.70824 1.77099 0.96571 1.10760 1.26199 1.22553 0.88935 0.90383 1.01555 1.98419 1.35244 1.64666 1.96493 1.19934 0.90957 0.95148 1.20611 1.17146 0.77888 0.84057 0.83971 1.90745 1.53170 1.67631 1.31186 1.48161 1.64166 1.13641 1.04811 1.22490 1.00475 0.78068 0.99998 1.21881 0.89041 0.99091 0.83965 0.86396 1.22702 0.99453 0.96810 0.98440 1.22662 0.97556 0.98005 0.98570 1.22087 0.91112 0.88768 0.95395 0.90612 1.22608 1.00456 0.94932 0.84600 1.45176 1.58257 1.15852 1.11204 1.18941 1.15506 1.14725 0.86247 0.90721 1.24811 0.97990 1.00470 0.96648 1.69819 1.36014 1.29778 1.20301 0.86227 0.78631 0.78881 0.82123 1.21623 1.21222 1.21209 0.88939 0.90207 0.88706 0.91226 0.90036 0.92869 0.92821 0.92125 0.92836 0.92156 0.91785 0.93437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.88 10.25 36.00 0.37 -0.51 16 2 C 0.14 1.62 7.29 -81.60 -0.60 1.02 16 3 N -0.45 -4.65 7.28 33.86 0.25 -4.40 16 4 H 0.45 2.71 8.96 -182.73 -1.64 1.07 16 5 N -0.28 -3.83 12.64 33.18 0.42 -3.41 16 6 C 0.16 2.41 7.72 -16.91 -0.13 2.28 16 7 Cl 0.02 0.35 27.06 -51.86 -1.40 -1.05 16 8 C -0.25 -3.93 3.95 -105.04 -0.41 -4.34 16 9 C 0.58 10.92 7.06 -12.54 -0.09 10.83 16 10 O -0.55 -11.96 16.57 5.26 0.09 -11.88 16 11 N -0.58 -10.98 2.29 -172.31 -0.39 -11.38 16 12 C 0.11 2.43 5.83 -3.22 -0.02 2.42 16 13 C 0.17 3.77 3.09 -65.67 -0.20 3.57 16 14 H 0.12 3.01 6.35 -51.92 -0.33 2.68 16 15 C -0.13 -2.65 6.23 -24.96 -0.16 -2.80 16 16 C -0.13 -2.32 6.24 -24.95 -0.16 -2.48 16 17 C 0.14 2.61 4.32 -65.24 -0.28 2.33 16 18 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 19 C 0.10 1.77 5.85 -2.79 -0.02 1.75 16 20 N -0.58 -13.60 2.79 -152.14 -0.42 -14.02 16 21 C -0.23 -5.80 10.37 -15.06 -0.16 -5.95 16 22 H 0.08 1.87 7.85 -52.49 -0.41 1.46 16 23 C 0.00 -0.05 5.42 -17.43 -0.09 -0.15 16 24 N -0.91 -24.63 10.35 55.49 0.57 -24.06 16 25 Si 0.91 20.92 29.56 -169.99 -5.03 15.89 16 26 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 27 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 28 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 29 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.09 1.02 7.96 -51.93 -0.41 0.61 16 32 H 0.07 1.53 7.11 -51.92 -0.37 1.16 16 33 H 0.08 1.98 7.78 -51.93 -0.40 1.57 16 34 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.05 1.05 7.86 -51.92 -0.41 0.64 16 36 H 0.06 1.02 5.56 -51.93 -0.29 0.73 16 37 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.06 0.96 6.33 -51.93 -0.33 0.64 16 39 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 LS Contribution 336.41 15.07 5.07 5.07 Total: -1.00 -30.67 336.41 -9.05 -39.72 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -6.26 Total: 1.55 kcal Atomic # 6 Polarization: 9.90 SS G_CDS: -1.94 Total: 7.96 kcal Atomic # 7 Polarization: -57.69 SS G_CDS: 0.42 Total: -57.26 kcal Atomic # 8 Polarization: -11.96 SS G_CDS: 0.09 Total: -11.88 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.03 Total: 15.89 kcal Atomic # 17 Polarization: 0.35 SS G_CDS: -1.40 Total: -1.05 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.67 -9.05 -39.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029334080.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.679 kcal (2) G-P(sol) polarization free energy of solvation -30.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.723 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds