Wall clock time and date at job start Tue Mar 31 2020 13:51:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.34232 * 126.27986 * 2 1 4 4 H 0.96995 * 125.73447 * 0.02562 * 3 2 1 5 5 N 1.39933 * 108.52006 * 180.02562 * 3 2 1 6 6 C 1.30527 * 108.89642 * 359.75238 * 5 3 2 7 7 Cl 1.73604 * 126.00441 * 180.26035 * 6 5 3 8 8 C 1.38073 * 126.28082 * 180.02562 * 2 1 3 9 9 C 1.47380 * 126.42137 * 359.94554 * 8 2 1 10 10 O 1.21615 * 120.00372 * 90.00146 * 9 8 2 11 11 N 1.34774 * 120.00365 * 269.99788 * 9 8 2 12 12 C 1.47162 * 120.71627 * 180.02562 * 11 9 8 13 13 C 1.53881 * 108.03240 * 132.73475 * 12 11 9 14 14 H 1.09010 * 112.09625 * 181.91485 * 13 12 11 15 15 C 1.54542 * 108.37271 * 306.25310 * 13 12 11 16 16 C 1.54827 * 104.74404 * 89.16980 * 15 13 12 17 17 C 1.54550 * 104.74433 * 0.02562 * 16 15 13 18 18 H 1.08999 * 112.68166 * 146.80338 * 17 16 15 19 19 C 1.47162 * 120.70564 * 359.97438 * 11 9 8 20 20 N 1.48306 * 107.20904 * 58.36392 * 13 12 11 21 21 C 1.36940 * 128.07917 * 106.09414 * 20 13 12 22 22 H 1.07998 * 119.99888 * 165.13522 * 21 20 13 23 23 C 1.38813 * 119.99801 * 345.13927 * 21 20 13 24 24 N 1.31614 * 120.00163 * 350.71818 * 23 21 20 25 25 Si 1.86800 * 119.99833 * 170.72098 * 23 21 20 26 26 H 1.48498 * 109.46912 * 179.97438 * 25 23 21 27 27 H 1.48498 * 109.46964 * 299.99966 * 25 23 21 28 28 H 1.48496 * 109.47049 * 59.99894 * 25 23 21 29 29 H 1.08996 * 109.47404 * 269.97584 * 1 2 3 30 30 H 1.09002 * 109.47614 * 29.97886 * 1 2 3 31 31 H 1.09005 * 109.47111 * 149.97832 * 1 2 3 32 32 H 1.09008 * 109.74654 * 13.10395 * 12 11 9 33 33 H 1.08999 * 109.79524 * 252.39815 * 12 11 9 34 34 H 1.09004 * 110.36967 * 208.14001 * 15 13 12 35 35 H 1.09008 * 110.36410 * 330.45615 * 15 13 12 36 36 H 1.08996 * 110.31050 * 241.25204 * 16 15 13 37 37 H 1.09005 * 110.61026 * 118.91357 * 16 15 13 38 38 H 1.08998 * 109.75646 * 346.89919 * 19 11 9 39 39 H 1.09006 * 109.74942 * 107.63263 * 19 11 9 40 40 H 0.96994 * 120.00282 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3013 1.0821 0.0000 4 1 2.0018 2.0046 0.0004 5 7 3.6339 0.6553 -0.0006 6 6 3.6598 -0.6497 0.0044 7 17 5.0842 -1.6422 0.0122 8 6 2.3240 -1.1130 -0.0005 9 6 1.8858 -2.5202 0.0000 10 8 1.7042 -3.1009 -1.0530 11 7 1.6863 -3.1635 1.1674 12 6 1.2494 -4.5686 1.1862 13 6 2.1384 -5.3307 2.1846 14 1 1.8920 -6.3917 2.2262 15 6 3.6165 -5.0896 1.8031 16 6 4.0202 -3.8118 2.5786 17 6 2.7474 -3.4040 3.3546 18 1 2.9713 -2.9427 4.3164 19 6 1.9020 -2.4761 2.4506 20 7 1.9860 -4.6679 3.5025 21 6 1.2979 -5.1157 4.5985 22 1 1.4620 -4.6584 5.5630 23 6 0.3895 -6.1574 4.4697 24 7 0.0526 -6.5928 3.2743 25 14 -0.3548 -6.9412 5.9932 26 1 -1.2883 -8.0225 5.5877 27 1 0.7273 -7.5109 6.8357 28 1 -1.0955 -5.9130 6.7673 29 1 -0.3634 -0.0004 1.0276 30 1 -0.3634 0.8902 -0.5135 31 1 -0.3633 -0.8898 -0.5142 32 1 1.3578 -5.0014 0.1916 33 1 0.2076 -4.6271 1.5015 34 1 4.2310 -5.9349 2.1131 35 1 3.7093 -4.9257 0.7294 36 1 4.3102 -3.0235 1.8839 37 1 4.8346 -4.0245 3.2712 38 1 2.4369 -1.5414 2.2825 39 1 0.9420 -2.2718 2.9249 40 1 -0.5824 -7.3204 3.1843 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029334080.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:58 Heat of formation + Delta-G solvation = 54.901412 kcal Electronic energy + Delta-G solvation = -26806.389568 eV Core-core repulsion = 23069.992837 eV Total energy + Delta-G solvation = -3736.396731 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.109 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.70193 -41.18665 -39.12855 -37.94950 -35.37829 -34.13689 -33.72511 -32.70214 -31.81866 -30.98819 -28.74575 -27.59585 -25.58433 -25.45748 -23.28360 -23.05471 -21.24509 -21.00774 -20.08593 -19.04658 -18.16157 -17.59594 -16.86724 -16.67576 -16.43080 -16.34595 -16.13724 -15.55289 -15.15212 -14.66138 -14.54398 -14.41419 -14.17770 -14.08319 -13.54273 -13.37859 -13.30313 -13.20079 -13.01060 -12.84667 -12.73307 -12.65387 -12.49169 -11.98211 -11.92522 -11.76296 -11.49428 -11.35736 -11.11484 -10.99635 -10.63836 -10.50861 -9.83465 -9.69125 -8.66513 -7.79854 -5.15443 0.36780 0.44875 1.01095 1.52295 1.53786 1.56201 1.60326 1.85032 2.27728 2.55315 3.38984 3.43871 3.54021 3.68496 3.86540 4.05996 4.10294 4.17989 4.26471 4.35776 4.42717 4.58204 4.60541 4.69463 4.74164 4.80335 4.87268 5.02169 5.04345 5.10258 5.15063 5.16992 5.32400 5.41855 5.57938 5.61612 5.87487 5.97832 6.26166 6.27063 6.60039 7.10658 7.22310 7.77392 8.56815 9.31473 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.018838 B = 0.004603 C = 0.004263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.972369 B = 6082.073977 C = 6566.299755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.161 3.839 3 N -0.424 5.424 4 H 0.467 0.533 5 N -0.287 5.287 6 C 0.149 3.851 7 Cl 0.019 6.981 8 C -0.291 4.291 9 C 0.593 3.407 10 O -0.585 6.585 11 N -0.577 5.577 12 C 0.130 3.870 13 C 0.167 3.833 14 H 0.082 0.918 15 C -0.127 4.127 16 C -0.119 4.119 17 C 0.129 3.871 18 H 0.091 0.909 19 C 0.110 3.890 20 N -0.601 5.601 21 C -0.231 4.231 22 H 0.081 0.919 23 C -0.052 4.052 24 N -0.937 5.937 25 Si 0.970 3.030 26 H -0.300 1.300 27 H -0.284 1.284 28 H -0.279 1.279 29 H 0.107 0.893 30 H 0.120 0.880 31 H 0.074 0.926 32 H 0.058 0.942 33 H 0.049 0.951 34 H 0.055 0.945 35 H 0.052 0.948 36 H 0.075 0.925 37 H 0.066 0.934 38 H 0.087 0.913 39 H 0.058 0.942 40 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.817 16.814 -4.548 17.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.027 3.973 3 N -0.136 5.136 4 H 0.318 0.682 5 N -0.113 5.113 6 C -0.044 4.044 7 Cl 0.047 6.953 8 C -0.307 4.307 9 C 0.380 3.620 10 O -0.466 6.466 11 N -0.307 5.307 12 C 0.006 3.994 13 C 0.059 3.941 14 H 0.100 0.900 15 C -0.166 4.166 16 C -0.158 4.158 17 C 0.022 3.978 18 H 0.109 0.891 19 C -0.015 4.015 20 N -0.322 5.322 21 C -0.360 4.360 22 H 0.098 0.902 23 C -0.247 4.247 24 N -0.584 5.584 25 Si 0.799 3.201 26 H -0.226 1.226 27 H -0.210 1.210 28 H -0.205 1.205 29 H 0.125 0.875 30 H 0.139 0.861 31 H 0.092 0.908 32 H 0.076 0.924 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.093 0.907 37 H 0.084 0.916 38 H 0.105 0.895 39 H 0.076 0.924 40 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 4.388 17.289 -4.960 18.513 hybrid contribution -0.974 -1.336 0.585 1.753 sum 3.414 15.953 -4.375 16.891 Atomic orbital electron populations 1.20776 0.83452 1.05868 1.05698 1.21698 0.95932 0.85161 0.94468 1.45782 1.01768 1.09315 1.56734 0.68200 1.77067 0.98165 1.09873 1.26203 1.22568 0.88595 0.90832 1.02356 1.98410 1.35426 1.64960 1.96532 1.19708 0.92055 0.94047 1.24843 1.17480 0.76488 0.85128 0.82882 1.90719 1.54570 1.68936 1.32420 1.48106 1.64241 1.12553 1.05806 1.22002 0.98567 0.79992 0.98885 1.21704 0.90852 0.97261 0.84289 0.90021 1.22584 0.97415 0.97989 0.98604 1.22611 0.97256 0.97297 0.98661 1.22332 0.91189 0.87607 0.96677 0.89135 1.22523 1.00150 0.95324 0.83458 1.45320 1.58463 1.17678 1.10772 1.19255 1.15048 1.14481 0.87219 0.90168 1.25481 0.99023 1.01394 0.98771 1.70009 1.36588 1.30010 1.21822 0.85297 0.77629 0.77765 0.79388 1.22636 1.21029 1.20464 0.87499 0.86143 0.90754 0.92369 0.93241 0.92646 0.92931 0.90683 0.91552 0.89510 0.92394 0.94363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.44 10.25 71.24 0.73 -0.71 16 2 C 0.16 3.34 7.29 42.15 0.31 3.65 16 3 N -0.42 -7.09 7.28 -46.79 -0.34 -7.43 16 4 H 0.47 3.49 8.96 -213.43 -1.91 1.58 16 5 N -0.29 -6.97 12.64 -48.95 -0.62 -7.59 16 6 C 0.15 4.20 7.72 85.66 0.66 4.86 16 7 Cl 0.02 0.53 27.06 -2.72 -0.07 0.45 16 8 C -0.29 -8.56 3.95 -20.14 -0.08 -8.64 16 9 C 0.59 21.92 7.06 86.65 0.61 22.53 16 10 O -0.59 -25.89 16.57 -4.08 -0.07 -25.96 16 11 N -0.58 -21.88 2.29 -817.33 -1.87 -23.75 16 12 C 0.13 5.83 5.83 86.55 0.50 6.33 16 13 C 0.17 7.70 3.09 45.47 0.14 7.84 16 14 H 0.08 4.39 6.35 -2.38 -0.02 4.37 16 15 C -0.13 -4.98 6.23 31.74 0.20 -4.78 16 16 C -0.12 -4.11 6.24 31.75 0.20 -3.91 16 17 C 0.13 4.81 4.32 45.75 0.20 5.01 16 18 H 0.09 3.12 8.14 -2.39 -0.02 3.10 16 19 C 0.11 3.75 5.85 86.83 0.51 4.26 16 20 N -0.60 -28.03 2.79 -635.26 -1.77 -29.81 16 21 C -0.23 -11.87 10.37 84.03 0.87 -11.00 16 22 H 0.08 3.94 7.85 -2.91 -0.02 3.92 16 23 C -0.05 -2.77 5.42 84.86 0.46 -2.31 16 24 N -0.94 -52.38 10.35 21.65 0.22 -52.15 16 25 Si 0.97 43.50 29.56 68.60 2.03 45.52 16 26 H -0.30 -13.79 7.11 99.48 0.71 -13.09 16 27 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 28 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 29 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.07 1.47 7.96 -2.38 -0.02 1.45 16 32 H 0.06 2.70 7.11 -2.38 -0.02 2.69 16 33 H 0.05 2.52 7.78 -2.39 -0.02 2.51 16 34 H 0.05 2.12 8.14 -2.38 -0.02 2.10 16 35 H 0.05 2.06 7.86 -2.38 -0.02 2.04 16 36 H 0.07 2.37 5.56 -2.39 -0.01 2.36 16 37 H 0.07 2.13 8.14 -2.38 -0.02 2.11 16 38 H 0.09 2.54 6.33 -2.39 -0.02 2.52 16 39 H 0.06 2.06 8.14 -2.38 -0.02 2.04 16 40 H 0.25 13.71 8.31 -92.71 -0.77 12.94 16 Total: -1.00 -68.05 336.41 2.00 -66.05 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -0.82 Total: 11.53 kcal Atomic # 6 Polarization: 17.82 SS G_CDS: 5.31 Total: 23.13 kcal Atomic # 7 Polarization: -116.36 SS G_CDS: -4.38 Total: -120.74 kcal Atomic # 8 Polarization: -25.89 SS G_CDS: -0.07 Total: -25.96 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.52 kcal Atomic # 17 Polarization: 0.53 SS G_CDS: -0.07 Total: 0.45 kcal Total: -68.05 2.00 -66.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029334080.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.956 kcal (2) G-P(sol) polarization free energy of solvation -68.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds