Wall clock time and date at job start Tue Mar 31 2020 14:05:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50698 * 109.47184 * 2 1 4 4 N 1.35635 * 126.43661 * 265.03073 * 3 2 1 5 5 H 0.96995 * 124.93564 * 359.92436 * 4 3 2 6 6 N 1.28477 * 110.13036 * 179.97438 * 4 3 2 7 7 C 1.31824 * 110.13555 * 359.97438 * 6 4 3 8 8 C 1.47660 * 126.46099 * 180.02562 * 7 6 4 9 9 O 1.21571 * 120.00201 * 179.97438 * 8 7 6 10 10 N 1.34779 * 119.99806 * 359.97438 * 8 7 6 11 11 C 1.47870 * 126.94579 * 359.68449 * 10 8 7 12 12 C 1.55969 * 105.13038 * 180.63140 * 11 10 8 13 13 H 1.09004 * 116.54318 * 160.09813 * 12 11 10 14 14 C 1.58970 * 98.68879 * 34.64216 * 12 11 10 15 15 C 1.49297 * 126.94334 * 179.97438 * 10 8 7 16 16 H 1.08998 * 116.15079 * 16.67749 * 15 10 8 17 17 C 1.56024 * 104.09035 * 247.53761 * 15 10 8 18 18 N 1.47871 * 105.10240 * 288.76455 * 17 15 10 19 19 C 1.36933 * 126.94097 * 182.02028 * 18 17 15 20 20 H 1.08006 * 120.00016 * 179.97438 * 19 18 17 21 21 C 1.38813 * 120.00531 * 359.97438 * 19 18 17 22 22 N 1.31628 * 119.99574 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00478 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47033 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47160 * 119.99697 * 23 21 19 26 26 H 1.48495 * 109.47154 * 239.99642 * 23 21 19 27 27 C 1.35470 * 126.42804 * 84.71601 * 3 2 1 28 28 Cl 1.73595 * 127.24123 * 359.97438 * 27 3 2 29 29 H 1.09001 * 109.47002 * 299.99404 * 1 2 3 30 30 H 1.08993 * 109.46955 * 59.99842 * 1 2 3 31 31 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46801 * 120.00442 * 2 1 3 33 33 H 1.09001 * 109.46998 * 240.00038 * 2 1 3 34 34 H 1.08996 * 110.31807 * 300.93051 * 11 10 8 35 35 H 1.09000 * 110.31237 * 63.11785 * 11 10 8 36 36 H 1.09001 * 112.08239 * 190.73789 * 14 12 11 37 37 H 1.09005 * 113.30740 * 62.74817 * 14 12 11 38 38 H 1.09000 * 110.31346 * 47.67394 * 17 15 10 39 39 H 1.09001 * 110.31196 * 169.76270 * 17 15 10 40 40 H 0.96998 * 119.99687 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.3901 2.1488 -1.0871 5 1 2.3628 1.8298 -2.0027 6 7 2.7711 3.3220 -0.7278 7 6 2.6922 3.4432 0.5825 8 6 3.0404 4.6391 1.3756 9 8 2.9215 4.6220 2.5854 10 7 3.4901 5.7496 0.7583 11 6 3.6986 5.9368 -0.6936 12 6 4.2405 7.3917 -0.8428 13 1 4.7683 7.6224 -1.7682 14 6 5.0929 7.4691 0.4968 15 6 3.8840 7.0374 1.4029 16 1 4.0693 7.0004 2.4763 17 6 2.7972 8.0496 0.9247 18 7 3.0824 8.2723 -0.5091 19 6 2.4184 9.1161 -1.3589 20 1 2.7235 9.1920 -2.3922 21 6 1.3530 9.8739 -0.8924 22 7 0.9808 9.7810 0.3667 23 14 0.4476 11.0255 -2.0515 24 1 1.0570 10.9469 -3.4034 25 1 -0.9811 10.6279 -2.1282 26 1 0.5475 12.4175 -1.5442 27 6 2.2059 2.2127 1.0854 28 17 1.8980 1.8038 2.7441 29 1 -0.3633 0.5137 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5139 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 4.4123 5.2045 -1.0709 35 1 2.7512 5.8523 -1.2259 36 1 5.4295 8.4836 0.7103 37 1 5.9125 6.7511 0.5286 38 1 1.8018 7.6237 1.0509 39 1 2.8813 8.9847 1.4784 40 1 0.2366 10.3108 0.6927 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032450447.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:11 Heat of formation + Delta-G solvation = 92.041888 kcal Electronic energy + Delta-G solvation = -25669.371183 eV Core-core repulsion = 21934.584985 eV Total energy + Delta-G solvation = -3734.786199 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.109 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.79412 -39.79144 -37.57534 -36.44363 -34.55526 -33.55928 -32.01109 -31.15458 -29.52037 -28.84301 -28.44077 -25.16674 -24.50419 -24.03822 -22.80657 -21.21775 -20.29428 -19.74497 -18.38526 -17.89511 -17.09210 -16.17058 -16.00415 -15.60091 -15.05023 -14.85989 -14.46386 -14.31508 -13.99735 -13.78163 -13.25122 -13.01064 -12.79638 -12.28319 -12.01639 -12.01453 -11.85739 -11.58892 -11.52249 -11.30142 -11.22558 -10.95325 -10.82541 -10.68295 -10.54760 -10.49607 -10.15097 -10.01247 -9.61346 -9.55429 -9.40521 -8.81899 -8.67140 -7.90057 -6.87771 -5.73227 -3.07320 1.55903 1.82345 2.04343 2.87090 3.38646 3.40421 3.43768 3.47068 3.71628 4.24848 4.45161 4.46586 4.58978 4.89769 4.98289 5.13940 5.18276 5.28642 5.30003 5.43418 5.50904 5.62079 5.68609 5.69215 5.83442 5.84528 5.91683 6.11970 6.31691 6.39360 6.48515 6.59256 6.66292 6.72681 6.85458 7.47228 7.53922 7.68062 7.76562 8.11970 8.15526 8.63373 9.14089 9.74961 10.44791 11.39015 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.016399 B = 0.003715 C = 0.003496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.974203 B = 7535.456819 C = 8006.901287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.053 4.053 3 C 0.026 3.974 4 N -0.379 5.379 5 H 0.449 0.551 6 N -0.233 5.233 7 C 0.019 3.981 8 C 0.607 3.393 9 O -0.533 6.533 10 N -0.591 5.591 11 C 0.095 3.905 12 C 0.140 3.860 13 H 0.105 0.895 14 C -0.155 4.155 15 C 0.100 3.900 16 H 0.114 0.886 17 C 0.175 3.825 18 N -0.595 5.595 19 C -0.229 4.229 20 H 0.081 0.919 21 C -0.006 4.006 22 N -0.919 5.919 23 Si 0.912 3.088 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.290 1.290 27 C -0.101 4.101 28 Cl -0.010 7.010 29 H 0.064 0.936 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.093 0.907 33 H 0.079 0.921 34 H 0.059 0.941 35 H 0.072 0.928 36 H 0.083 0.917 37 H 0.067 0.933 38 H 0.048 0.952 39 H 0.057 0.943 40 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.321 -19.765 -2.591 20.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.092 4.092 3 C -0.101 4.101 4 N -0.094 5.094 5 H 0.294 0.706 6 N -0.068 5.068 7 C -0.144 4.144 8 C 0.392 3.608 9 O -0.409 6.409 10 N -0.324 5.324 11 C -0.031 4.031 12 C 0.031 3.969 13 H 0.123 0.877 14 C -0.195 4.195 15 C -0.002 4.002 16 H 0.132 0.868 17 C 0.050 3.950 18 N -0.319 5.319 19 C -0.357 4.357 20 H 0.099 0.901 21 C -0.203 4.203 22 N -0.565 5.565 23 Si 0.742 3.258 24 H -0.205 1.205 25 H -0.219 1.219 26 H -0.217 1.217 27 C -0.138 4.138 28 Cl 0.018 6.982 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.111 0.889 33 H 0.098 0.902 34 H 0.077 0.923 35 H 0.090 0.910 36 H 0.101 0.899 37 H 0.086 0.914 38 H 0.066 0.934 39 H 0.075 0.925 40 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 4.264 -19.056 -2.686 19.711 hybrid contribution -0.967 -0.061 -0.338 1.026 sum 3.297 -19.117 -3.024 19.634 Atomic orbital electron populations 1.21778 0.93644 1.02398 1.03002 1.20146 0.96798 0.88054 1.04207 1.21132 1.05681 0.96776 0.86509 1.43274 1.47984 1.08670 1.09491 0.70561 1.73889 1.17267 1.01637 1.14042 1.21987 1.06868 0.96014 0.89527 1.16339 0.78195 0.80320 0.85912 1.90798 1.54979 1.82525 1.12582 1.49024 1.62190 1.11939 1.09270 1.23242 1.01195 0.98693 0.79939 1.23475 0.89223 0.88394 0.95845 0.87703 1.24498 0.95738 1.01118 0.98098 1.24401 0.96523 0.81952 0.97331 0.86805 1.21924 0.93973 0.94643 0.84468 1.45176 1.33279 1.46691 1.06785 1.19085 1.09654 1.15327 0.91652 0.90129 1.24817 0.98839 1.00216 0.96436 1.69933 1.29700 1.43556 1.13347 0.86050 0.79519 0.80498 0.79684 1.20487 1.21854 1.21738 1.20468 1.10974 0.94465 0.87940 1.98346 1.94280 1.92859 1.12669 0.91650 0.92501 0.91536 0.88851 0.90237 0.92268 0.91011 0.89868 0.91434 0.93430 0.92515 0.93656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.90 37.16 0.37 -0.68 16 2 C -0.05 -0.37 6.36 -27.88 -0.18 -0.55 16 3 C 0.03 0.28 6.51 -81.90 -0.53 -0.25 16 4 N -0.38 -4.05 6.86 33.62 0.23 -3.82 16 5 H 0.45 2.88 8.96 -190.44 -1.71 1.18 16 6 N -0.23 -3.50 9.99 33.42 0.33 -3.16 16 7 C 0.02 0.32 6.99 -82.76 -0.58 -0.26 16 8 C 0.61 12.35 7.90 -12.41 -0.10 12.25 16 9 O -0.53 -11.90 16.22 5.30 0.09 -11.81 16 10 N -0.59 -11.80 2.94 -157.95 -0.46 -12.26 16 11 C 0.09 1.75 4.99 -1.70 -0.01 1.74 16 12 C 0.14 2.69 5.55 -61.49 -0.34 2.35 16 13 H 0.11 1.81 8.14 -51.93 -0.42 1.38 16 14 C -0.15 -2.70 6.94 -21.18 -0.15 -2.85 16 15 C 0.10 2.01 5.18 -62.53 -0.32 1.69 16 16 H 0.11 2.20 8.06 -51.93 -0.42 1.78 16 17 C 0.18 4.31 4.79 -1.67 -0.01 4.31 16 18 N -0.60 -14.66 3.06 -155.19 -0.48 -15.13 16 19 C -0.23 -6.19 10.37 -15.06 -0.16 -6.35 16 20 H 0.08 2.07 7.83 -52.48 -0.41 1.66 16 21 C -0.01 -0.18 5.49 -17.43 -0.10 -0.27 16 22 N -0.92 -27.16 10.56 55.49 0.59 -26.57 16 23 Si 0.91 21.95 29.55 -169.99 -5.02 16.93 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 25 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 26 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 27 C -0.10 -1.50 6.79 -39.31 -0.27 -1.77 16 28 Cl -0.01 -0.15 28.02 -51.86 -1.45 -1.60 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.06 0.96 7.75 -51.93 -0.40 0.56 16 35 H 0.07 1.49 7.92 -51.93 -0.41 1.08 16 36 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 37 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.05 1.36 7.68 -51.93 -0.40 0.96 16 39 H 0.06 1.52 7.46 -51.93 -0.39 1.13 16 40 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 345.37 15.07 5.20 5.20 Total: -1.00 -33.78 345.37 -9.99 -43.78 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -6.65 Total: -0.93 kcal Atomic # 6 Polarization: 11.74 SS G_CDS: -2.37 Total: 9.37 kcal Atomic # 7 Polarization: -61.16 SS G_CDS: 0.21 Total: -60.94 kcal Atomic # 8 Polarization: -11.90 SS G_CDS: 0.09 Total: -11.81 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Atomic # 17 Polarization: -0.15 SS G_CDS: -1.45 Total: -1.60 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.78 -9.99 -43.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032450447.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.820 kcal (2) G-P(sol) polarization free energy of solvation -33.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.778 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds