Wall clock time and date at job start Tue Mar 31 2020 14:05:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50698 * 109.47184 * 2 1 4 4 N 1.35635 * 126.43661 * 265.03073 * 3 2 1 5 5 H 0.96995 * 124.93564 * 359.92436 * 4 3 2 6 6 N 1.28477 * 110.13036 * 179.97438 * 4 3 2 7 7 C 1.31824 * 110.13555 * 359.97438 * 6 4 3 8 8 C 1.47660 * 126.46099 * 180.02562 * 7 6 4 9 9 O 1.21571 * 120.00201 * 179.97438 * 8 7 6 10 10 N 1.34779 * 119.99806 * 359.97438 * 8 7 6 11 11 C 1.47870 * 126.94579 * 359.68449 * 10 8 7 12 12 C 1.55969 * 105.13038 * 180.63140 * 11 10 8 13 13 H 1.09004 * 116.54318 * 160.09813 * 12 11 10 14 14 C 1.58970 * 98.68879 * 34.64216 * 12 11 10 15 15 C 1.49297 * 126.94334 * 179.97438 * 10 8 7 16 16 H 1.08998 * 116.15079 * 16.67749 * 15 10 8 17 17 C 1.56024 * 104.09035 * 247.53761 * 15 10 8 18 18 N 1.47871 * 105.10240 * 288.76455 * 17 15 10 19 19 C 1.36933 * 126.94097 * 182.02028 * 18 17 15 20 20 H 1.08006 * 120.00016 * 179.97438 * 19 18 17 21 21 C 1.38813 * 120.00531 * 359.97438 * 19 18 17 22 22 N 1.31628 * 119.99574 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00478 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47033 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47160 * 119.99697 * 23 21 19 26 26 H 1.48495 * 109.47154 * 239.99642 * 23 21 19 27 27 C 1.35470 * 126.42804 * 84.71601 * 3 2 1 28 28 Cl 1.73595 * 127.24123 * 359.97438 * 27 3 2 29 29 H 1.09001 * 109.47002 * 299.99404 * 1 2 3 30 30 H 1.08993 * 109.46955 * 59.99842 * 1 2 3 31 31 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46801 * 120.00442 * 2 1 3 33 33 H 1.09001 * 109.46998 * 240.00038 * 2 1 3 34 34 H 1.08996 * 110.31807 * 300.93051 * 11 10 8 35 35 H 1.09000 * 110.31237 * 63.11785 * 11 10 8 36 36 H 1.09001 * 112.08239 * 190.73789 * 14 12 11 37 37 H 1.09005 * 113.30740 * 62.74817 * 14 12 11 38 38 H 1.09000 * 110.31346 * 47.67394 * 17 15 10 39 39 H 1.09001 * 110.31196 * 169.76270 * 17 15 10 40 40 H 0.96998 * 119.99687 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.3901 2.1488 -1.0871 5 1 2.3628 1.8298 -2.0027 6 7 2.7711 3.3220 -0.7278 7 6 2.6922 3.4432 0.5825 8 6 3.0404 4.6391 1.3756 9 8 2.9215 4.6220 2.5854 10 7 3.4901 5.7496 0.7583 11 6 3.6986 5.9368 -0.6936 12 6 4.2405 7.3917 -0.8428 13 1 4.7683 7.6224 -1.7682 14 6 5.0929 7.4691 0.4968 15 6 3.8840 7.0374 1.4029 16 1 4.0693 7.0004 2.4763 17 6 2.7972 8.0496 0.9247 18 7 3.0824 8.2723 -0.5091 19 6 2.4184 9.1161 -1.3589 20 1 2.7235 9.1920 -2.3922 21 6 1.3530 9.8739 -0.8924 22 7 0.9808 9.7810 0.3667 23 14 0.4476 11.0255 -2.0515 24 1 1.0570 10.9469 -3.4034 25 1 -0.9811 10.6279 -2.1282 26 1 0.5475 12.4175 -1.5442 27 6 2.2059 2.2127 1.0854 28 17 1.8980 1.8038 2.7441 29 1 -0.3633 0.5137 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5139 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 4.4123 5.2045 -1.0709 35 1 2.7512 5.8523 -1.2259 36 1 5.4295 8.4836 0.7103 37 1 5.9125 6.7511 0.5286 38 1 1.8018 7.6237 1.0509 39 1 2.8813 8.9847 1.4784 40 1 0.2366 10.3108 0.6927 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032450447.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:11 Heat of formation + Delta-G solvation = 69.475479 kcal Electronic energy + Delta-G solvation = -25670.349736 eV Core-core repulsion = 21934.584985 eV Total energy + Delta-G solvation = -3735.764752 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.109 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.85832 -41.41067 -39.19330 -37.54098 -35.53351 -35.21752 -33.49569 -32.62333 -30.82784 -30.25626 -30.12307 -26.97110 -26.04170 -24.76564 -24.43371 -22.19606 -21.82699 -21.40562 -19.99450 -18.93191 -18.76348 -17.73379 -17.35932 -17.11762 -16.50498 -16.02235 -15.92534 -15.68434 -15.28703 -15.00453 -14.67176 -14.57452 -13.86631 -13.57770 -13.48388 -13.36513 -13.11330 -13.08485 -12.90913 -12.78635 -12.73663 -12.34332 -12.21581 -12.11634 -12.01737 -11.97851 -11.86754 -11.64684 -11.53513 -11.09836 -10.73561 -10.51751 -9.86558 -9.52315 -8.90557 -7.84022 -5.19939 0.36835 0.74338 1.02330 1.46456 1.47319 1.57668 1.74120 2.11082 2.25105 2.48668 3.21114 3.32920 3.44368 3.50311 3.68259 3.79780 3.92261 4.02162 4.09439 4.20114 4.34671 4.39640 4.53767 4.63486 4.72011 4.82252 4.93114 4.96716 5.02688 5.03252 5.11475 5.13807 5.28376 5.36499 5.45584 5.54033 5.65641 5.93263 6.10298 6.54966 6.63391 7.03301 7.09272 7.71139 8.42294 9.27568 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.016399 B = 0.003715 C = 0.003496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.974203 B = 7535.456819 C = 8006.901287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.052 4.052 3 C 0.056 3.944 4 N -0.354 5.354 5 H 0.470 0.530 6 N -0.241 5.241 7 C -0.017 4.017 8 C 0.599 3.401 9 O -0.565 6.565 10 N -0.598 5.598 11 C 0.109 3.891 12 C 0.134 3.866 13 H 0.136 0.864 14 C -0.129 4.129 15 C 0.102 3.898 16 H 0.118 0.882 17 C 0.189 3.811 18 N -0.615 5.615 19 C -0.229 4.229 20 H 0.096 0.904 21 C -0.072 4.072 22 N -0.958 5.958 23 Si 0.978 3.022 24 H -0.257 1.257 25 H -0.301 1.301 26 H -0.295 1.295 27 C -0.130 4.130 28 Cl -0.018 7.018 29 H 0.042 0.958 30 H 0.056 0.944 31 H 0.090 0.910 32 H 0.099 0.901 33 H 0.118 0.882 34 H 0.092 0.908 35 H 0.046 0.954 36 H 0.085 0.915 37 H 0.104 0.896 38 H -0.007 1.007 39 H 0.023 0.977 40 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.845 -22.181 -5.327 23.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.090 4.090 3 C -0.072 4.072 4 N -0.072 5.072 5 H 0.320 0.680 6 N -0.078 5.078 7 C -0.178 4.178 8 C 0.386 3.614 9 O -0.443 6.443 10 N -0.330 5.330 11 C -0.015 4.015 12 C 0.027 3.973 13 H 0.153 0.847 14 C -0.168 4.168 15 C -0.001 4.001 16 H 0.136 0.864 17 C 0.063 3.937 18 N -0.339 5.339 19 C -0.358 4.358 20 H 0.114 0.886 21 C -0.264 4.264 22 N -0.607 5.607 23 Si 0.807 3.193 24 H -0.181 1.181 25 H -0.229 1.229 26 H -0.222 1.222 27 C -0.167 4.167 28 Cl 0.011 6.989 29 H 0.061 0.939 30 H 0.076 0.924 31 H 0.108 0.892 32 H 0.118 0.882 33 H 0.136 0.864 34 H 0.110 0.890 35 H 0.064 0.936 36 H 0.103 0.897 37 H 0.122 0.878 38 H 0.012 0.988 39 H 0.041 0.959 40 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 5.837 -21.503 -5.489 22.947 hybrid contribution -1.459 0.563 0.460 1.631 sum 4.378 -20.939 -5.029 21.975 Atomic orbital electron populations 1.21785 0.93433 1.03657 1.01925 1.20392 0.96738 0.85428 1.06456 1.21657 1.02720 0.97771 0.85029 1.43389 1.45817 1.07353 1.10669 0.67983 1.73765 1.17743 1.03402 1.12892 1.21637 1.09736 0.95876 0.90521 1.16827 0.77373 0.81180 0.85992 1.90757 1.56111 1.83375 1.14054 1.49101 1.62373 1.11668 1.09839 1.23074 1.00605 0.98896 0.78927 1.23879 0.87936 0.87433 0.98020 0.84667 1.24403 0.95107 1.02167 0.95145 1.24268 0.96285 0.81265 0.98247 0.86439 1.21505 0.93065 0.93989 0.85121 1.45429 1.34804 1.47184 1.06445 1.19582 1.09131 1.14494 0.92552 0.88611 1.25679 1.00371 1.02533 0.97835 1.70180 1.30234 1.44875 1.15416 0.85007 0.77608 0.77952 0.78765 1.18113 1.22865 1.22222 1.20689 1.12719 0.94607 0.88687 1.98333 1.94393 1.92753 1.13433 0.93907 0.92446 0.89157 0.88224 0.86366 0.88970 0.93593 0.89667 0.87803 0.98834 0.95937 0.94729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.90 71.98 0.71 -0.95 16 2 C -0.05 -0.53 6.36 29.85 0.19 -0.34 16 3 C 0.06 1.09 6.51 41.33 0.27 1.36 16 4 N -0.35 -6.52 6.86 -47.55 -0.33 -6.85 16 5 H 0.47 4.18 8.96 -219.99 -1.97 2.21 16 6 N -0.24 -6.83 9.99 -48.18 -0.48 -7.31 16 7 C -0.02 -0.59 6.99 42.45 0.30 -0.29 16 8 C 0.60 24.84 7.90 86.73 0.69 25.52 16 9 O -0.56 -26.16 16.22 -3.94 -0.06 -26.23 16 10 N -0.60 -23.91 2.94 -771.90 -2.27 -26.18 16 11 C 0.11 3.90 4.99 87.15 0.43 4.33 16 12 C 0.13 4.91 5.55 47.64 0.26 5.17 16 13 H 0.14 4.15 8.14 -2.38 -0.02 4.13 16 14 C -0.13 -4.22 6.94 34.19 0.24 -3.99 16 15 C 0.10 4.17 5.18 46.94 0.24 4.41 16 16 H 0.12 4.68 8.06 -2.39 -0.02 4.66 16 17 C 0.19 9.82 4.79 87.16 0.42 10.24 16 18 N -0.61 -30.56 3.06 -644.90 -1.97 -32.53 16 19 C -0.23 -12.40 10.37 84.03 0.87 -11.53 16 20 H 0.10 4.79 7.83 -2.91 -0.02 4.76 16 21 C -0.07 -4.10 5.49 84.86 0.47 -3.64 16 22 N -0.96 -59.62 10.56 21.65 0.23 -59.39 16 23 Si 0.98 45.96 29.55 68.60 2.03 47.99 16 24 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 25 H -0.30 -14.47 7.11 99.48 0.71 -13.77 16 26 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 27 C -0.13 -3.76 6.79 22.45 0.15 -3.60 16 28 Cl -0.02 -0.52 28.02 -2.72 -0.08 -0.59 16 29 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.12 0.40 8.14 -2.39 -0.02 0.38 16 34 H 0.09 2.71 7.75 -2.39 -0.02 2.69 16 35 H 0.05 1.89 7.92 -2.39 -0.02 1.87 16 36 H 0.08 2.81 8.14 -2.39 -0.02 2.79 16 37 H 0.10 2.74 8.14 -2.38 -0.02 2.72 16 38 H -0.01 -0.41 7.68 -2.39 -0.02 -0.42 16 39 H 0.02 1.30 7.46 -2.39 -0.02 1.28 16 40 H 0.24 14.89 8.31 -92.71 -0.77 14.12 16 Total: -1.00 -79.09 345.37 1.41 -77.68 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -0.89 Total: 6.73 kcal Atomic # 6 Polarization: 21.45 SS G_CDS: 5.24 Total: 26.69 kcal Atomic # 7 Polarization: -127.44 SS G_CDS: -4.82 Total: -132.26 kcal Atomic # 8 Polarization: -26.16 SS G_CDS: -0.06 Total: -26.23 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.99 kcal Atomic # 17 Polarization: -0.52 SS G_CDS: -0.08 Total: -0.59 kcal Total: -79.09 1.41 -77.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032450447.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.153 kcal (2) G-P(sol) polarization free energy of solvation -79.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds