Wall clock time and date at job start Tue Mar 31 2020 13:51:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30409 * 125.98218 * 2 1 4 4 N 1.39917 * 108.96420 * 180.02562 * 3 2 1 5 5 C 1.46502 * 125.74881 * 180.02562 * 4 3 2 6 6 C 1.34348 * 108.50228 * 359.73100 * 4 3 2 7 7 Cl 1.73597 * 126.32127 * 180.28661 * 6 4 3 8 8 C 1.38277 * 107.35728 * 0.42858 * 6 4 3 9 9 C 1.47302 * 126.43076 * 179.83689 * 8 6 4 10 10 O 1.21618 * 119.99953 * 269.68551 * 9 8 6 11 11 N 1.34779 * 120.00279 * 89.41838 * 9 8 6 12 12 C 1.47874 * 126.93966 * 0.29156 * 11 9 8 13 13 C 1.56020 * 105.10244 * 181.98331 * 12 11 9 14 14 H 1.09002 * 116.24899 * 158.83600 * 13 12 11 15 15 C 1.57089 * 99.60594 * 32.80840 * 13 12 11 16 16 C 1.49282 * 126.94770 * 179.97438 * 11 9 8 17 17 H 1.08997 * 116.15532 * 15.85888 * 16 11 9 18 18 C 1.58440 * 103.70094 * 246.54100 * 16 11 9 19 19 N 1.47871 * 104.83020 * 288.54351 * 18 16 11 20 20 C 1.36936 * 126.94347 * 182.30140 * 19 18 16 21 21 H 1.07998 * 120.00273 * 173.68445 * 20 19 18 22 22 C 1.38815 * 119.99882 * 353.67815 * 20 19 18 23 23 N 1.31625 * 119.99783 * 6.43610 * 22 20 19 24 24 Si 1.86797 * 120.00090 * 186.42768 * 22 20 19 25 25 H 1.48501 * 109.46918 * 94.98933 * 24 22 20 26 26 H 1.48496 * 109.47539 * 214.98782 * 24 22 20 27 27 H 1.48505 * 109.47101 * 334.99216 * 24 22 20 28 28 H 1.08997 * 109.47066 * 269.99713 * 1 2 3 29 29 H 1.09001 * 109.47156 * 29.99470 * 1 2 3 30 30 H 1.09005 * 109.47428 * 149.99756 * 1 2 3 31 31 H 1.08994 * 109.47509 * 89.97873 * 5 4 3 32 32 H 1.09008 * 109.46877 * 209.97683 * 5 4 3 33 33 H 1.08996 * 109.47133 * 329.97282 * 5 4 3 34 34 H 1.08998 * 110.31545 * 300.88868 * 12 11 9 35 35 H 1.08998 * 110.31514 * 63.07910 * 12 11 9 36 36 H 1.08997 * 112.37010 * 64.27642 * 15 13 12 37 37 H 1.09007 * 112.36550 * 191.71781 * 15 13 12 38 38 H 1.08999 * 110.19133 * 169.85601 * 18 16 11 39 39 H 1.08995 * 110.78299 * 47.53759 * 18 16 11 40 40 H 0.97002 * 119.99246 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2731 1.0553 0.0000 4 7 3.6110 0.6458 -0.0006 5 6 4.7774 1.5322 -0.0002 6 6 3.6458 -0.6972 0.0050 7 17 5.0707 -1.6889 0.0137 8 6 2.3372 -1.1438 -0.0007 9 6 1.8921 -2.5480 -0.0010 10 8 1.7079 -3.1273 -1.0543 11 7 1.6941 -3.1925 1.1661 12 6 1.8700 -2.6409 2.5268 13 6 1.5568 -3.8276 3.4901 14 1 1.9618 -3.7494 4.4990 15 6 2.0819 -5.0215 2.6145 16 6 1.2467 -4.6052 1.3463 17 1 1.3184 -5.2476 0.4687 18 6 -0.1862 -4.4636 2.0075 19 7 0.0775 -3.9992 3.3864 20 6 -0.8482 -3.7723 4.3696 21 1 -0.5242 -3.5310 5.3712 22 6 -2.2032 -3.8523 4.0789 23 7 -2.5987 -4.2690 2.8946 24 14 -3.4653 -3.3689 5.3684 25 1 -3.8662 -1.9540 5.1626 26 1 -4.6585 -4.2443 5.2459 27 1 -2.8744 -3.5241 6.7220 28 1 -0.3633 -0.0001 1.0276 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3634 -0.8900 -0.5139 31 1 5.0668 1.7517 1.0274 32 1 5.6053 1.0436 -0.5143 33 1 4.5283 2.4607 -0.5138 34 1 2.8957 -2.3001 2.6673 35 1 1.1714 -1.8216 2.6962 36 1 3.1569 -4.9686 2.4427 37 1 1.7782 -5.9909 3.0100 38 1 -0.6903 -5.4299 2.0235 39 1 -0.7893 -3.7317 1.4705 40 1 -3.5456 -4.3245 2.6914 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032548710.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:30 Heat of formation + Delta-G solvation = 101.378090 kcal Electronic energy + Delta-G solvation = -26148.787992 eV Core-core repulsion = 22414.406642 eV Total energy + Delta-G solvation = -3734.381351 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.109 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -41.48592 -39.74186 -37.54776 -37.12700 -34.17314 -33.56329 -31.59900 -30.39183 -29.54098 -28.75465 -28.47050 -26.05111 -25.16317 -23.67403 -22.24857 -20.69512 -20.08505 -19.73686 -18.55237 -17.63171 -16.71245 -16.31595 -15.82642 -15.64862 -15.25130 -14.64865 -14.22171 -13.94624 -13.64106 -13.47324 -13.24508 -13.00104 -12.76579 -12.65272 -12.26811 -12.16297 -11.92003 -11.83140 -11.77973 -11.60041 -11.34753 -10.99741 -10.86719 -10.78833 -10.75175 -10.56744 -10.22017 -10.06980 -9.64771 -9.54179 -9.31912 -8.68203 -8.63279 -7.94513 -6.90680 -5.77477 -3.10744 1.18559 1.37146 2.33422 2.39431 2.95165 3.37658 3.42947 3.45434 3.51960 4.22043 4.42683 4.71489 4.82980 4.93982 5.03154 5.09973 5.22226 5.23503 5.36813 5.40718 5.58303 5.64630 5.72928 5.77992 5.86168 5.95036 5.99523 6.21676 6.31447 6.35411 6.43836 6.49863 6.55769 6.60678 6.73785 7.39490 7.41609 7.53441 7.73288 8.09428 8.12928 8.62265 9.10903 9.71650 10.41932 11.34952 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.016626 B = 0.004333 C = 0.003942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.677555 B = 6460.597494 C = 7100.722125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.126 3.874 3 N -0.277 5.277 4 N -0.358 5.358 5 C 0.095 3.905 6 C 0.152 3.848 7 Cl 0.007 6.993 8 C -0.237 4.237 9 C 0.609 3.391 10 O -0.545 6.545 11 N -0.593 5.593 12 C 0.090 3.910 13 C 0.142 3.858 14 H 0.104 0.896 15 C -0.151 4.151 16 C 0.096 3.904 17 H 0.115 0.885 18 C 0.177 3.823 19 N -0.597 5.597 20 C -0.231 4.231 21 H 0.080 0.920 22 C -0.003 4.003 23 N -0.916 5.916 24 Si 0.909 3.091 25 H -0.289 1.289 26 H -0.291 1.291 27 H -0.281 1.281 28 H 0.090 0.910 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.097 0.903 34 H 0.048 0.952 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.084 0.916 38 H 0.051 0.949 39 H 0.053 0.947 40 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.437 8.135 -4.117 17.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.040 4.040 3 N -0.100 5.100 4 N -0.141 5.141 5 C -0.045 4.045 6 C -0.004 4.004 7 Cl 0.035 6.965 8 C -0.253 4.253 9 C 0.395 3.605 10 O -0.423 6.423 11 N -0.326 5.326 12 C -0.035 4.035 13 C 0.033 3.967 14 H 0.122 0.878 15 C -0.190 4.190 16 C -0.007 4.007 17 H 0.133 0.867 18 C 0.052 3.948 19 N -0.321 5.321 20 C -0.359 4.359 21 H 0.098 0.902 22 C -0.200 4.200 23 N -0.563 5.563 24 Si 0.740 3.260 25 H -0.216 1.216 26 H -0.218 1.218 27 H -0.206 1.206 28 H 0.108 0.892 29 H 0.098 0.902 30 H 0.104 0.896 31 H 0.100 0.900 32 H 0.108 0.892 33 H 0.116 0.884 34 H 0.066 0.934 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.102 0.898 38 H 0.069 0.931 39 H 0.071 0.929 40 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 15.352 9.148 -4.708 18.480 hybrid contribution -0.372 -0.459 0.650 0.879 sum 14.980 8.688 -4.058 17.786 Atomic orbital electron populations 1.20338 0.85031 1.04032 1.04359 1.22348 0.97289 0.88198 0.96142 1.77255 0.84653 1.21525 1.26601 1.48291 1.06604 1.02525 1.56666 1.22004 0.83898 0.94510 1.04119 1.21833 0.89618 0.84065 1.04909 1.98418 1.35589 1.65748 1.96772 1.19866 0.90148 0.95591 1.19745 1.16626 0.77394 0.83714 0.82770 1.90761 1.53182 1.67646 1.30715 1.49111 1.64644 1.13636 1.05168 1.23236 0.98935 0.99135 0.82220 1.23146 0.86769 0.91158 0.95661 0.87843 1.24185 0.98059 0.99980 0.96808 1.24925 0.97601 0.81237 0.96917 0.86689 1.22388 0.88809 0.99485 0.84156 1.45197 0.99216 1.77687 1.09967 1.19038 0.85789 1.41474 0.89630 0.90226 1.24811 0.96877 1.01364 0.96949 1.69922 1.14588 1.51161 1.20611 0.86146 0.81320 0.78049 0.80502 1.21627 1.21787 1.20639 0.89177 0.90248 0.89615 0.89954 0.89245 0.88415 0.93360 0.91151 0.91553 0.89790 0.93053 0.92890 0.93574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.17 10.28 36.00 0.37 -0.80 16 2 C 0.13 2.05 7.26 -82.02 -0.60 1.46 16 3 N -0.28 -4.20 12.49 33.90 0.42 -3.78 16 4 N -0.36 -4.66 3.98 -64.32 -0.26 -4.91 16 5 C 0.10 0.73 11.28 59.85 0.67 1.41 16 6 C 0.15 2.21 7.54 -16.44 -0.12 2.08 16 7 Cl 0.01 0.08 28.57 -51.86 -1.48 -1.40 16 8 C -0.24 -4.07 5.16 -105.02 -0.54 -4.61 16 9 C 0.61 11.84 7.27 -12.57 -0.09 11.75 16 10 O -0.54 -12.16 17.45 5.26 0.09 -12.07 16 11 N -0.59 -11.19 2.95 -156.35 -0.46 -11.65 16 12 C 0.09 1.60 5.97 -1.67 -0.01 1.59 16 13 C 0.14 2.62 5.47 -62.55 -0.34 2.27 16 14 H 0.10 1.72 8.14 -51.93 -0.42 1.30 16 15 C -0.15 -2.52 6.86 -22.09 -0.15 -2.67 16 16 C 0.10 1.84 5.35 -60.96 -0.33 1.51 16 17 H 0.12 2.14 8.05 -51.93 -0.42 1.73 16 18 C 0.18 4.15 4.89 -0.29 0.00 4.15 16 19 N -0.60 -14.05 3.02 -154.76 -0.47 -14.52 16 20 C -0.23 -6.04 10.36 -15.06 -0.16 -6.19 16 21 H 0.08 1.99 7.84 -52.49 -0.41 1.58 16 22 C 0.00 -0.08 5.49 -17.43 -0.10 -0.18 16 23 N -0.92 -26.10 10.60 55.49 0.59 -25.51 16 24 Si 0.91 21.38 29.56 -169.99 -5.02 16.35 16 25 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 26 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 27 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 28 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 29 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.09 1.37 8.01 -51.93 -0.42 0.95 16 31 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.09 0.53 7.78 -51.92 -0.40 0.13 16 33 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.07 1.39 8.13 -51.93 -0.42 0.96 16 36 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 38 H 0.05 1.33 7.64 -51.93 -0.40 0.93 16 39 H 0.05 1.42 7.53 -51.93 -0.39 1.03 16 40 H 0.25 7.09 8.31 -40.82 -0.34 6.76 16 LS Contribution 351.54 15.07 5.30 5.30 Total: -1.00 -32.36 351.54 -8.06 -40.42 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: -5.38 Total: 0.00 kcal Atomic # 6 Polarization: 13.16 SS G_CDS: -1.39 Total: 11.77 kcal Atomic # 7 Polarization: -60.19 SS G_CDS: -0.17 Total: -60.37 kcal Atomic # 8 Polarization: -12.16 SS G_CDS: 0.09 Total: -12.07 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 17 Polarization: 0.08 SS G_CDS: -1.48 Total: -1.40 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.36 -8.06 -40.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032548710.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.796 kcal (2) G-P(sol) polarization free energy of solvation -32.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds