Wall clock time and date at job start Tue Mar 31 2020 13:51:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30409 * 125.98218 * 2 1 4 4 N 1.39917 * 108.96420 * 180.02562 * 3 2 1 5 5 C 1.46502 * 125.74881 * 180.02562 * 4 3 2 6 6 C 1.34348 * 108.50228 * 359.73100 * 4 3 2 7 7 Cl 1.73597 * 126.32127 * 180.28661 * 6 4 3 8 8 C 1.38277 * 107.35728 * 0.42858 * 6 4 3 9 9 C 1.47302 * 126.43076 * 179.83689 * 8 6 4 10 10 O 1.21618 * 119.99953 * 269.68551 * 9 8 6 11 11 N 1.34779 * 120.00279 * 89.41838 * 9 8 6 12 12 C 1.47874 * 126.93966 * 0.29156 * 11 9 8 13 13 C 1.56020 * 105.10244 * 181.98331 * 12 11 9 14 14 H 1.09002 * 116.24899 * 158.83600 * 13 12 11 15 15 C 1.57089 * 99.60594 * 32.80840 * 13 12 11 16 16 C 1.49282 * 126.94770 * 179.97438 * 11 9 8 17 17 H 1.08997 * 116.15532 * 15.85888 * 16 11 9 18 18 C 1.58440 * 103.70094 * 246.54100 * 16 11 9 19 19 N 1.47871 * 104.83020 * 288.54351 * 18 16 11 20 20 C 1.36936 * 126.94347 * 182.30140 * 19 18 16 21 21 H 1.07998 * 120.00273 * 173.68445 * 20 19 18 22 22 C 1.38815 * 119.99882 * 353.67815 * 20 19 18 23 23 N 1.31625 * 119.99783 * 6.43610 * 22 20 19 24 24 Si 1.86797 * 120.00090 * 186.42768 * 22 20 19 25 25 H 1.48501 * 109.46918 * 94.98933 * 24 22 20 26 26 H 1.48496 * 109.47539 * 214.98782 * 24 22 20 27 27 H 1.48505 * 109.47101 * 334.99216 * 24 22 20 28 28 H 1.08997 * 109.47066 * 269.99713 * 1 2 3 29 29 H 1.09001 * 109.47156 * 29.99470 * 1 2 3 30 30 H 1.09005 * 109.47428 * 149.99756 * 1 2 3 31 31 H 1.08994 * 109.47509 * 89.97873 * 5 4 3 32 32 H 1.09008 * 109.46877 * 209.97683 * 5 4 3 33 33 H 1.08996 * 109.47133 * 329.97282 * 5 4 3 34 34 H 1.08998 * 110.31545 * 300.88868 * 12 11 9 35 35 H 1.08998 * 110.31514 * 63.07910 * 12 11 9 36 36 H 1.08997 * 112.37010 * 64.27642 * 15 13 12 37 37 H 1.09007 * 112.36550 * 191.71781 * 15 13 12 38 38 H 1.08999 * 110.19133 * 169.85601 * 18 16 11 39 39 H 1.08995 * 110.78299 * 47.53759 * 18 16 11 40 40 H 0.97002 * 119.99246 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2731 1.0553 0.0000 4 7 3.6110 0.6458 -0.0006 5 6 4.7774 1.5322 -0.0002 6 6 3.6458 -0.6972 0.0050 7 17 5.0707 -1.6889 0.0137 8 6 2.3372 -1.1438 -0.0007 9 6 1.8921 -2.5480 -0.0010 10 8 1.7079 -3.1273 -1.0543 11 7 1.6941 -3.1925 1.1661 12 6 1.8700 -2.6409 2.5268 13 6 1.5568 -3.8276 3.4901 14 1 1.9618 -3.7494 4.4990 15 6 2.0819 -5.0215 2.6145 16 6 1.2467 -4.6052 1.3463 17 1 1.3184 -5.2476 0.4687 18 6 -0.1862 -4.4636 2.0075 19 7 0.0775 -3.9992 3.3864 20 6 -0.8482 -3.7723 4.3696 21 1 -0.5242 -3.5310 5.3712 22 6 -2.2032 -3.8523 4.0789 23 7 -2.5987 -4.2690 2.8946 24 14 -3.4653 -3.3689 5.3684 25 1 -3.8662 -1.9540 5.1626 26 1 -4.6585 -4.2443 5.2459 27 1 -2.8744 -3.5241 6.7220 28 1 -0.3633 -0.0001 1.0276 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3634 -0.8900 -0.5139 31 1 5.0668 1.7517 1.0274 32 1 5.6053 1.0436 -0.5143 33 1 4.5283 2.4607 -0.5138 34 1 2.8957 -2.3001 2.6673 35 1 1.1714 -1.8216 2.6962 36 1 3.1569 -4.9686 2.4427 37 1 1.7782 -5.9909 3.0100 38 1 -0.6903 -5.4299 2.0235 39 1 -0.7893 -3.7317 1.4705 40 1 -3.5456 -4.3245 2.6914 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032548710.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:29 Heat of formation + Delta-G solvation = 80.992715 kcal Electronic energy + Delta-G solvation = -26149.671969 eV Core-core repulsion = 22414.406642 eV Total energy + Delta-G solvation = -3735.265327 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.109 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.64368 -41.28416 -39.13257 -38.16730 -35.44178 -35.17787 -33.31322 -31.67290 -30.73127 -30.26618 -30.13475 -27.10489 -26.93559 -25.26638 -23.64236 -22.01133 -21.42879 -21.27987 -20.06822 -19.11006 -18.22643 -17.71439 -17.27766 -16.89332 -16.58263 -16.28598 -15.71468 -15.58857 -15.00308 -14.67014 -14.55083 -14.26448 -13.82084 -13.73668 -13.71430 -13.48173 -13.35620 -13.28668 -13.13653 -12.87855 -12.82640 -12.79418 -12.70479 -12.31874 -12.10890 -12.00441 -11.94897 -11.83566 -11.50370 -11.10576 -10.68696 -10.38942 -9.80605 -9.54028 -8.85758 -7.81595 -5.15843 0.10493 0.25272 1.10034 1.43028 1.47543 1.49560 1.50748 1.59215 2.07699 2.51363 3.14492 3.36073 3.44513 3.67111 3.67497 3.90126 3.92870 3.99266 4.16803 4.18851 4.21404 4.31535 4.56486 4.57089 4.57817 4.66283 4.69912 4.78165 4.89017 4.97284 5.04814 5.14398 5.19417 5.27525 5.47864 5.48807 5.60030 5.70835 6.14133 6.24707 6.61108 7.07392 7.10718 7.74762 8.46256 9.29908 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.016626 B = 0.004333 C = 0.003942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.677555 B = 6460.597494 C = 7100.722125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.112 3.888 3 N -0.283 5.283 4 N -0.345 5.345 5 C 0.080 3.920 6 C 0.161 3.839 7 Cl 0.031 6.969 8 C -0.273 4.273 9 C 0.612 3.388 10 O -0.582 6.582 11 N -0.594 5.594 12 C 0.101 3.899 13 C 0.137 3.863 14 H 0.132 0.868 15 C -0.127 4.127 16 C 0.099 3.901 17 H 0.119 0.881 18 C 0.189 3.811 19 N -0.614 5.614 20 C -0.230 4.230 21 H 0.093 0.907 22 C -0.064 4.064 23 N -0.952 5.952 24 Si 0.971 3.029 25 H -0.292 1.292 26 H -0.302 1.302 27 H -0.263 1.263 28 H 0.081 0.919 29 H 0.101 0.899 30 H 0.063 0.937 31 H 0.104 0.896 32 H 0.110 0.890 33 H 0.113 0.887 34 H 0.082 0.918 35 H 0.046 0.954 36 H 0.102 0.898 37 H 0.086 0.914 38 H 0.017 0.983 39 H 0.006 0.994 40 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.748 9.382 -2.833 21.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.053 4.053 3 N -0.107 5.107 4 N -0.127 5.127 5 C -0.058 4.058 6 C 0.002 3.998 7 Cl 0.059 6.941 8 C -0.289 4.289 9 C 0.399 3.601 10 O -0.463 6.463 11 N -0.325 5.325 12 C -0.024 4.024 13 C 0.031 3.969 14 H 0.150 0.850 15 C -0.166 4.166 16 C -0.004 4.004 17 H 0.137 0.863 18 C 0.063 3.937 19 N -0.339 5.339 20 C -0.359 4.359 21 H 0.111 0.889 22 C -0.257 4.257 23 N -0.601 5.601 24 Si 0.800 3.200 25 H -0.220 1.220 26 H -0.229 1.229 27 H -0.187 1.187 28 H 0.100 0.900 29 H 0.120 0.880 30 H 0.082 0.918 31 H 0.122 0.878 32 H 0.129 0.871 33 H 0.132 0.868 34 H 0.100 0.900 35 H 0.065 0.935 36 H 0.121 0.879 37 H 0.104 0.896 38 H 0.035 0.965 39 H 0.024 0.976 40 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 18.727 10.433 -3.384 21.702 hybrid contribution -1.254 -0.796 0.235 1.503 sum 17.474 9.637 -3.149 20.202 Atomic orbital electron populations 1.20254 0.85142 1.04056 1.03806 1.22396 0.97608 0.88385 0.96897 1.77201 0.85713 1.21102 1.26706 1.48720 1.07007 1.02624 1.54313 1.22540 0.82541 0.94548 1.06160 1.21838 0.89625 0.84888 1.03400 1.98427 1.33834 1.65228 1.96563 1.19710 0.91748 0.94302 1.23138 1.16953 0.76472 0.84499 0.82150 1.90726 1.54807 1.68802 1.31964 1.49168 1.64195 1.13439 1.05731 1.23090 1.00141 0.97913 0.81240 1.23530 0.83685 0.92115 0.97608 0.85000 1.24096 0.99482 0.99132 0.93889 1.24803 0.95287 0.82157 0.98106 0.86312 1.21991 0.90874 0.96177 0.84701 1.45419 1.01566 1.77565 1.09307 1.19485 0.86402 1.39351 0.90642 0.88931 1.25587 0.98963 1.02445 0.98713 1.70148 1.13977 1.53293 1.22667 0.85160 0.78703 0.76947 0.79152 1.21989 1.22874 1.18737 0.90003 0.88001 0.91766 0.87778 0.87118 0.86828 0.89950 0.93540 0.87943 0.89597 0.96517 0.97614 0.94662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.29 10.28 71.23 0.73 -1.55 16 2 C 0.11 3.64 7.26 43.53 0.32 3.95 16 3 N -0.28 -8.15 12.49 -46.67 -0.58 -8.74 16 4 N -0.34 -8.04 3.98 -357.41 -1.42 -9.46 16 5 C 0.08 0.93 11.28 127.77 1.44 2.37 16 6 C 0.16 4.32 7.54 84.32 0.64 4.95 16 7 Cl 0.03 0.67 28.57 -2.72 -0.08 0.59 16 8 C -0.27 -9.18 5.16 -20.12 -0.10 -9.29 16 9 C 0.61 23.91 7.27 86.63 0.63 24.54 16 10 O -0.58 -26.58 17.45 -4.09 -0.07 -26.65 16 11 N -0.59 -22.18 2.95 -766.81 -2.26 -24.44 16 12 C 0.10 3.41 5.97 87.16 0.52 3.93 16 13 C 0.14 4.77 5.47 46.94 0.26 5.02 16 14 H 0.13 3.87 8.14 -2.39 -0.02 3.85 16 15 C -0.13 -3.91 6.86 33.60 0.23 -3.68 16 16 C 0.10 3.82 5.35 47.97 0.26 4.07 16 17 H 0.12 4.48 8.05 -2.39 -0.02 4.46 16 18 C 0.19 9.26 4.89 88.06 0.43 9.70 16 19 N -0.61 -29.10 3.02 -643.53 -1.95 -31.05 16 20 C -0.23 -12.04 10.36 84.03 0.87 -11.17 16 21 H 0.09 4.51 7.84 -2.91 -0.02 4.48 16 22 C -0.06 -3.54 5.49 84.86 0.47 -3.07 16 23 N -0.95 -57.01 10.60 21.65 0.23 -56.78 16 24 Si 0.97 44.77 29.56 68.60 2.03 46.80 16 25 H -0.29 -13.50 7.11 99.48 0.71 -12.80 16 26 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 27 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 28 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 29 H 0.10 2.57 8.14 -2.39 -0.02 2.56 16 30 H 0.06 2.22 8.01 -2.38 -0.02 2.20 16 31 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.11 0.85 7.78 -2.38 -0.02 0.83 16 33 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 35 H 0.05 1.81 8.13 -2.39 -0.02 1.79 16 36 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 37 H 0.09 2.68 8.14 -2.38 -0.02 2.66 16 38 H 0.02 0.92 7.64 -2.39 -0.02 0.90 16 39 H 0.01 0.33 7.53 -2.39 -0.02 0.31 16 40 H 0.24 14.44 8.31 -92.71 -0.77 13.67 16 Total: -1.00 -73.62 351.54 3.64 -69.98 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: 1.06 Total: 9.98 kcal Atomic # 6 Polarization: 23.09 SS G_CDS: 6.68 Total: 29.78 kcal Atomic # 7 Polarization: -124.49 SS G_CDS: -5.98 Total: -130.47 kcal Atomic # 8 Polarization: -26.58 SS G_CDS: -0.07 Total: -26.65 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Atomic # 17 Polarization: 0.67 SS G_CDS: -0.08 Total: 0.59 kcal Total: -73.62 3.64 -69.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032548710.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.973 kcal (2) G-P(sol) polarization free energy of solvation -73.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.980 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds