Wall clock time and date at job start Tue Mar 31 2020 13:51:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35467 * 126.43879 * 2 1 4 4 Cl 1.73596 * 127.23828 * 359.97438 * 3 2 1 5 5 C 1.41550 * 105.52242 * 180.13959 * 3 2 1 6 6 C 1.47662 * 126.45862 * 179.84384 * 5 3 2 7 7 O 1.21572 * 119.99992 * 359.71271 * 6 5 3 8 8 N 1.34775 * 119.99760 * 179.71515 * 6 5 3 9 9 C 1.47859 * 126.94990 * 359.97438 * 8 6 5 10 10 C 1.55482 * 105.17781 * 181.92262 * 9 8 6 11 11 H 1.08997 * 116.03733 * 159.74881 * 10 9 8 12 12 C 1.57437 * 99.67994 * 32.85900 * 10 9 8 13 13 C 1.49294 * 126.94226 * 179.97438 * 8 6 5 14 14 H 1.09003 * 116.15309 * 15.84554 * 13 8 6 15 15 C 1.56021 * 104.09557 * 246.69663 * 13 8 6 16 16 N 1.47864 * 105.10416 * 288.77087 * 15 13 8 17 17 C 1.36938 * 126.94685 * 181.97612 * 16 15 13 18 18 H 1.07999 * 120.00325 * 180.02562 * 17 16 15 19 19 C 1.38815 * 119.99817 * 0.02779 * 17 16 15 20 20 N 1.31621 * 119.99673 * 359.71804 * 19 17 16 21 21 Si 1.86795 * 120.00115 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.47071 * 359.97438 * 21 19 17 23 23 H 1.48506 * 109.47211 * 119.99797 * 21 19 17 24 24 H 1.48493 * 109.47327 * 239.99664 * 21 19 17 25 25 N 1.31827 * 107.07751 * 359.58291 * 5 3 2 26 26 N 1.28471 * 110.13596 * 0.26306 * 25 5 3 27 27 C 1.46498 * 124.93099 * 180.02562 * 26 25 5 28 28 H 1.08999 * 109.47206 * 270.32574 * 1 2 3 29 29 H 1.09005 * 109.46674 * 30.32535 * 1 2 3 30 30 H 1.08997 * 109.47501 * 150.32049 * 1 2 3 31 31 H 1.09003 * 110.31362 * 300.91355 * 9 8 6 32 32 H 1.09008 * 110.31865 * 62.98849 * 9 8 6 33 33 H 1.09001 * 112.52781 * 191.70719 * 12 10 9 34 34 H 1.09000 * 112.31808 * 64.17222 * 12 10 9 35 35 H 1.08995 * 110.31611 * 169.85983 * 15 13 8 36 36 H 1.09002 * 110.30947 * 47.67196 * 15 13 8 37 37 H 0.97000 * 120.00043 * 180.02562 * 20 19 17 38 38 H 1.09001 * 109.47466 * 89.97137 * 27 26 25 39 39 H 1.09004 * 109.46717 * 209.97342 * 27 26 25 40 40 H 1.09002 * 109.47114 * 329.96815 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3116 1.0898 0.0000 4 17 1.8237 2.7558 -0.0006 5 6 3.6338 0.5845 -0.0033 6 6 4.8774 1.3806 -0.0078 7 8 4.8217 2.5950 -0.0143 8 7 6.0742 0.7608 -0.0049 9 6 6.3201 -0.6971 0.0033 10 6 7.8667 -0.8488 0.0538 11 1 8.2420 -1.8099 0.4053 12 6 8.2297 0.4229 0.9080 13 6 7.4197 1.4078 -0.0092 14 1 7.4449 2.4658 0.2520 15 6 8.0209 1.0251 -1.3971 16 7 8.3252 -0.4187 -1.3003 17 6 8.9050 -1.2039 -2.2607 18 1 9.0763 -2.2529 -2.0697 19 6 9.2726 -0.6514 -3.4800 20 7 9.0588 0.6259 -3.7149 21 14 10.0641 -1.7222 -4.7900 22 1 10.1888 -3.1127 -4.2838 23 1 9.2209 -1.7137 -6.0124 24 1 11.4124 -1.1915 -5.1150 25 7 3.5456 -0.7308 0.0041 26 7 2.3125 -1.0913 0.0061 27 6 1.8444 -2.4795 0.0145 28 1 -0.3633 0.0058 1.0276 29 1 -0.3633 0.8871 -0.5189 30 1 -0.3634 -0.8928 -0.5088 31 1 5.8656 -1.1526 0.8831 32 1 5.9249 -1.1528 -0.9047 33 1 9.2985 0.6371 0.9047 34 1 7.8262 0.3712 1.9193 35 1 8.9327 1.5923 -1.5840 36 1 7.2928 1.2061 -2.1877 37 1 9.3154 1.0120 -4.5670 38 1 1.7287 -2.8178 1.0442 39 1 0.8848 -2.5424 -0.4987 40 1 2.5715 -3.1112 -0.4959 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032656522.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:44 Heat of formation + Delta-G solvation = 106.492487 kcal Electronic energy + Delta-G solvation = -25845.723937 eV Core-core repulsion = 22111.564363 eV Total energy + Delta-G solvation = -3734.159574 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.109 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.74285 -39.84100 -37.60314 -36.39357 -33.82207 -33.39306 -32.62743 -31.38142 -29.10065 -28.48032 -27.60139 -26.98312 -25.12972 -23.91383 -22.51052 -20.97346 -20.20593 -19.63085 -18.38124 -17.19227 -16.85399 -16.63176 -16.05806 -15.57920 -14.94608 -14.78133 -14.40922 -13.95249 -13.72025 -13.56146 -13.28853 -13.22309 -12.99913 -12.69469 -12.53436 -12.14111 -11.83200 -11.77524 -11.55447 -11.35111 -11.22299 -10.94598 -10.83081 -10.70269 -10.54677 -10.47675 -10.15138 -10.00346 -9.58911 -9.52003 -9.16757 -8.70244 -8.66097 -7.87481 -6.85959 -5.71661 -3.05593 1.59919 1.87925 1.91692 2.68422 3.39434 3.42639 3.44241 3.47643 3.75355 4.26303 4.35744 4.46280 4.65497 4.75561 4.82591 5.05925 5.11733 5.18897 5.30064 5.32390 5.44368 5.48391 5.55019 5.64836 5.71279 5.85008 5.97375 6.13955 6.32359 6.39868 6.50780 6.53414 6.64733 6.68214 6.84748 7.48218 7.55861 7.76727 7.78119 8.13939 8.17427 8.66794 9.15520 9.76414 10.46442 11.40637 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.015727 B = 0.003905 C = 0.003649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1779.959389 B = 7168.364573 C = 7671.055426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.018 3.982 3 C -0.104 4.104 4 Cl -0.013 7.013 5 C 0.014 3.986 6 C 0.609 3.391 7 O -0.534 6.534 8 N -0.592 5.592 9 C 0.098 3.902 10 C 0.137 3.863 11 H 0.105 0.895 12 C -0.150 4.150 13 C 0.100 3.900 14 H 0.116 0.884 15 C 0.175 3.825 16 N -0.598 5.598 17 C -0.228 4.228 18 H 0.081 0.919 19 C -0.007 4.007 20 N -0.919 5.919 21 Si 0.911 3.089 22 H -0.280 1.280 23 H -0.292 1.292 24 H -0.291 1.291 25 N -0.237 5.237 26 N -0.283 5.283 27 C 0.088 3.912 28 H 0.081 0.919 29 H 0.087 0.913 30 H 0.073 0.927 31 H 0.056 0.944 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.065 0.935 35 H 0.057 0.943 36 H 0.047 0.953 37 H 0.253 0.747 38 H 0.086 0.914 39 H 0.095 0.905 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.085 -4.990 10.771 20.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.107 4.107 3 C -0.142 4.142 4 Cl 0.016 6.984 5 C -0.147 4.147 6 C 0.394 3.606 7 O -0.410 6.410 8 N -0.325 5.325 9 C -0.027 4.027 10 C 0.029 3.971 11 H 0.123 0.877 12 C -0.189 4.189 13 C -0.002 4.002 14 H 0.134 0.866 15 C 0.050 3.950 16 N -0.322 5.322 17 C -0.356 4.356 18 H 0.098 0.902 19 C -0.203 4.203 20 N -0.566 5.566 21 Si 0.742 3.258 22 H -0.205 1.205 23 H -0.219 1.219 24 H -0.218 1.218 25 N -0.072 5.072 26 N -0.072 5.072 27 C -0.052 4.052 28 H 0.100 0.900 29 H 0.106 0.894 30 H 0.092 0.908 31 H 0.074 0.926 32 H 0.091 0.909 33 H 0.103 0.897 34 H 0.083 0.917 35 H 0.075 0.925 36 H 0.065 0.935 37 H 0.063 0.937 38 H 0.105 0.895 39 H 0.113 0.887 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -16.519 -5.258 10.484 20.259 hybrid contribution -0.239 0.152 -0.924 0.967 sum -16.758 -5.105 9.560 19.957 Atomic orbital electron populations 1.20366 0.86048 1.04134 1.03509 1.21050 0.95266 0.85929 1.08448 1.20489 0.92098 0.87472 1.14105 1.98339 1.90790 1.12118 1.97154 1.21937 0.94244 0.89360 1.09160 1.16338 0.80569 0.85948 0.77727 1.90792 1.86011 1.12253 1.51917 1.49018 1.04746 1.08795 1.69958 1.23143 0.99041 0.79669 1.00864 1.23205 0.90387 0.96100 0.87443 0.87716 1.24198 1.00209 0.97610 0.96928 1.24395 0.79385 0.97066 0.99386 0.86634 1.21926 0.98249 0.84745 0.90129 1.45243 1.70469 1.05599 1.10916 1.19087 1.32122 0.91788 0.92648 0.90168 1.24809 1.01479 0.96207 0.97850 1.69930 1.52190 1.10680 1.23791 0.86059 0.78692 0.79259 0.81799 1.20509 1.21878 1.21757 1.73870 1.00989 1.13911 1.18410 1.45346 1.02854 1.07249 1.51779 1.22191 1.01772 0.76683 1.04520 0.90019 0.89385 0.90781 0.92620 0.90915 0.89701 0.91680 0.92520 0.93474 0.93680 0.89534 0.88655 0.88020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.59 9.99 36.00 0.36 -0.23 16 2 C 0.02 0.22 6.94 -81.90 -0.57 -0.35 16 3 C -0.10 -1.64 6.79 -39.31 -0.27 -1.91 16 4 Cl -0.01 -0.19 27.93 -51.86 -1.45 -1.64 16 5 C 0.01 0.26 6.99 -82.76 -0.58 -0.32 16 6 C 0.61 12.72 7.90 -12.41 -0.10 12.62 16 7 O -0.53 -12.17 16.22 5.30 0.09 -12.08 16 8 N -0.59 -12.07 2.95 -158.28 -0.47 -12.54 16 9 C 0.10 1.86 4.96 -1.98 -0.01 1.85 16 10 C 0.14 2.68 5.51 -62.64 -0.35 2.33 16 11 H 0.11 1.82 8.14 -51.93 -0.42 1.40 16 12 C -0.15 -2.65 6.83 -22.10 -0.15 -2.81 16 13 C 0.10 2.04 5.24 -62.55 -0.33 1.71 16 14 H 0.12 2.26 8.05 -51.93 -0.42 1.84 16 15 C 0.17 4.34 4.76 -1.68 -0.01 4.33 16 16 N -0.60 -14.81 3.02 -156.44 -0.47 -15.28 16 17 C -0.23 -6.20 10.38 -15.06 -0.16 -6.35 16 18 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 19 C -0.01 -0.19 5.49 -17.43 -0.10 -0.29 16 20 N -0.92 -27.31 10.56 55.49 0.59 -26.72 16 21 Si 0.91 22.03 29.55 -169.99 -5.02 17.00 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 24 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 25 N -0.24 -3.81 9.74 33.42 0.33 -3.48 16 26 N -0.28 -3.44 3.72 -63.68 -0.24 -3.67 16 27 C 0.09 0.57 11.12 59.85 0.67 1.24 16 28 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.09 0.63 8.04 -51.93 -0.42 0.22 16 30 H 0.07 0.35 7.02 -51.93 -0.36 -0.01 16 31 H 0.06 0.94 7.74 -51.93 -0.40 0.54 16 32 H 0.07 1.55 7.92 -51.92 -0.41 1.14 16 33 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 34 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.06 1.53 7.47 -51.93 -0.39 1.14 16 36 H 0.05 1.36 7.67 -51.93 -0.40 0.96 16 37 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 38 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.09 0.35 6.98 -51.93 -0.36 -0.01 16 40 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 LS Contribution 343.78 15.07 5.18 5.18 Total: -1.00 -34.88 343.78 -8.30 -43.17 By element: Atomic # 1 Polarization: 3.49 SS G_CDS: -5.24 Total: -1.75 kcal Atomic # 6 Polarization: 13.40 SS G_CDS: -1.58 Total: 11.82 kcal Atomic # 7 Polarization: -61.44 SS G_CDS: -0.26 Total: -61.70 kcal Atomic # 8 Polarization: -12.17 SS G_CDS: 0.09 Total: -12.08 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.00 kcal Atomic # 17 Polarization: -0.19 SS G_CDS: -1.45 Total: -1.64 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -34.88 -8.30 -43.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032656522.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.664 kcal (2) G-P(sol) polarization free energy of solvation -34.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds