Wall clock time and date at job start Tue Mar 31 2020 13:51:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35467 * 126.43879 * 2 1 4 4 Cl 1.73596 * 127.23828 * 359.97438 * 3 2 1 5 5 C 1.41550 * 105.52242 * 180.13959 * 3 2 1 6 6 C 1.47662 * 126.45862 * 179.84384 * 5 3 2 7 7 O 1.21572 * 119.99992 * 359.71271 * 6 5 3 8 8 N 1.34775 * 119.99760 * 179.71515 * 6 5 3 9 9 C 1.47859 * 126.94990 * 359.97438 * 8 6 5 10 10 C 1.55482 * 105.17781 * 181.92262 * 9 8 6 11 11 H 1.08997 * 116.03733 * 159.74881 * 10 9 8 12 12 C 1.57437 * 99.67994 * 32.85900 * 10 9 8 13 13 C 1.49294 * 126.94226 * 179.97438 * 8 6 5 14 14 H 1.09003 * 116.15309 * 15.84554 * 13 8 6 15 15 C 1.56021 * 104.09557 * 246.69663 * 13 8 6 16 16 N 1.47864 * 105.10416 * 288.77087 * 15 13 8 17 17 C 1.36938 * 126.94685 * 181.97612 * 16 15 13 18 18 H 1.07999 * 120.00325 * 180.02562 * 17 16 15 19 19 C 1.38815 * 119.99817 * 0.02779 * 17 16 15 20 20 N 1.31621 * 119.99673 * 359.71804 * 19 17 16 21 21 Si 1.86795 * 120.00115 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.47071 * 359.97438 * 21 19 17 23 23 H 1.48506 * 109.47211 * 119.99797 * 21 19 17 24 24 H 1.48493 * 109.47327 * 239.99664 * 21 19 17 25 25 N 1.31827 * 107.07751 * 359.58291 * 5 3 2 26 26 N 1.28471 * 110.13596 * 0.26306 * 25 5 3 27 27 C 1.46498 * 124.93099 * 180.02562 * 26 25 5 28 28 H 1.08999 * 109.47206 * 270.32574 * 1 2 3 29 29 H 1.09005 * 109.46674 * 30.32535 * 1 2 3 30 30 H 1.08997 * 109.47501 * 150.32049 * 1 2 3 31 31 H 1.09003 * 110.31362 * 300.91355 * 9 8 6 32 32 H 1.09008 * 110.31865 * 62.98849 * 9 8 6 33 33 H 1.09001 * 112.52781 * 191.70719 * 12 10 9 34 34 H 1.09000 * 112.31808 * 64.17222 * 12 10 9 35 35 H 1.08995 * 110.31611 * 169.85983 * 15 13 8 36 36 H 1.09002 * 110.30947 * 47.67196 * 15 13 8 37 37 H 0.97000 * 120.00043 * 180.02562 * 20 19 17 38 38 H 1.09001 * 109.47466 * 89.97137 * 27 26 25 39 39 H 1.09004 * 109.46717 * 209.97342 * 27 26 25 40 40 H 1.09002 * 109.47114 * 329.96815 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3116 1.0898 0.0000 4 17 1.8237 2.7558 -0.0006 5 6 3.6338 0.5845 -0.0033 6 6 4.8774 1.3806 -0.0078 7 8 4.8217 2.5950 -0.0143 8 7 6.0742 0.7608 -0.0049 9 6 6.3201 -0.6971 0.0033 10 6 7.8667 -0.8488 0.0538 11 1 8.2420 -1.8099 0.4053 12 6 8.2297 0.4229 0.9080 13 6 7.4197 1.4078 -0.0092 14 1 7.4449 2.4658 0.2520 15 6 8.0209 1.0251 -1.3971 16 7 8.3252 -0.4187 -1.3003 17 6 8.9050 -1.2039 -2.2607 18 1 9.0763 -2.2529 -2.0697 19 6 9.2726 -0.6514 -3.4800 20 7 9.0588 0.6259 -3.7149 21 14 10.0641 -1.7222 -4.7900 22 1 10.1888 -3.1127 -4.2838 23 1 9.2209 -1.7137 -6.0124 24 1 11.4124 -1.1915 -5.1150 25 7 3.5456 -0.7308 0.0041 26 7 2.3125 -1.0913 0.0061 27 6 1.8444 -2.4795 0.0145 28 1 -0.3633 0.0058 1.0276 29 1 -0.3633 0.8871 -0.5189 30 1 -0.3634 -0.8928 -0.5088 31 1 5.8656 -1.1526 0.8831 32 1 5.9249 -1.1528 -0.9047 33 1 9.2985 0.6371 0.9047 34 1 7.8262 0.3712 1.9193 35 1 8.9327 1.5923 -1.5840 36 1 7.2928 1.2061 -2.1877 37 1 9.3154 1.0120 -4.5670 38 1 1.7287 -2.8178 1.0442 39 1 0.8848 -2.5424 -0.4987 40 1 2.5715 -3.1112 -0.4959 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032656522.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:43 Heat of formation + Delta-G solvation = 83.143178 kcal Electronic energy + Delta-G solvation = -25846.736439 eV Core-core repulsion = 22111.564363 eV Total energy + Delta-G solvation = -3735.172076 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.109 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.80397 -41.48818 -39.23976 -37.52888 -35.49555 -34.63995 -33.51903 -33.14370 -30.83793 -30.26239 -28.50512 -27.87014 -26.97980 -25.50334 -23.99001 -22.14719 -21.67496 -21.23557 -20.01415 -18.77682 -18.05289 -17.66207 -17.63263 -17.25088 -16.48737 -16.14817 -15.81047 -15.67900 -14.99146 -14.79000 -14.58006 -14.16163 -13.83264 -13.71946 -13.61466 -13.46552 -13.36050 -13.11575 -13.08505 -12.84049 -12.80763 -12.74933 -12.45833 -12.28564 -12.17353 -11.98736 -11.89554 -11.67152 -11.52626 -11.10066 -10.74114 -10.22372 -9.78963 -9.51411 -8.90651 -7.83783 -5.19724 0.39627 0.77570 0.94173 1.46132 1.47188 1.57505 1.63592 1.99422 2.25814 2.48653 3.22140 3.33789 3.42092 3.52308 3.67077 3.81102 3.92574 4.00822 4.08677 4.20332 4.32499 4.37833 4.58190 4.63764 4.66344 4.71983 4.75686 4.85879 4.91786 4.97378 5.02260 5.07677 5.12665 5.26786 5.44742 5.53692 5.64922 5.71242 6.10027 6.54779 6.66853 7.03125 7.10061 7.70996 8.42225 9.27920 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.015727 B = 0.003905 C = 0.003649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1779.959389 B = 7168.364573 C = 7671.055426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.042 3.958 3 C -0.136 4.136 4 Cl -0.020 7.020 5 C -0.026 4.026 6 C 0.600 3.400 7 O -0.566 6.566 8 N -0.599 5.599 9 C 0.113 3.887 10 C 0.134 3.866 11 H 0.136 0.864 12 C -0.125 4.125 13 C 0.102 3.898 14 H 0.120 0.880 15 C 0.189 3.811 16 N -0.616 5.616 17 C -0.229 4.229 18 H 0.096 0.904 19 C -0.072 4.072 20 N -0.958 5.958 21 Si 0.978 3.022 22 H -0.257 1.257 23 H -0.301 1.301 24 H -0.295 1.295 25 N -0.250 5.250 26 N -0.271 5.271 27 C 0.073 3.927 28 H 0.104 0.896 29 H 0.087 0.913 30 H 0.108 0.892 31 H 0.086 0.914 32 H 0.045 0.955 33 H 0.088 0.912 34 H 0.100 0.900 35 H 0.023 0.977 36 H -0.008 1.008 37 H 0.243 0.757 38 H 0.113 0.887 39 H 0.132 0.868 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.013 -8.156 12.683 24.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.084 4.084 3 C -0.174 4.174 4 Cl 0.008 6.992 5 C -0.185 4.185 6 C 0.388 3.612 7 O -0.444 6.444 8 N -0.331 5.331 9 C -0.011 4.011 10 C 0.027 3.973 11 H 0.154 0.846 12 C -0.164 4.164 13 C -0.001 4.001 14 H 0.137 0.863 15 C 0.063 3.937 16 N -0.341 5.341 17 C -0.357 4.357 18 H 0.114 0.886 19 C -0.265 4.265 20 N -0.608 5.608 21 Si 0.807 3.193 22 H -0.181 1.181 23 H -0.229 1.229 24 H -0.222 1.222 25 N -0.087 5.087 26 N -0.061 5.061 27 C -0.064 4.064 28 H 0.122 0.878 29 H 0.105 0.895 30 H 0.126 0.874 31 H 0.104 0.896 32 H 0.063 0.937 33 H 0.106 0.894 34 H 0.119 0.881 35 H 0.042 0.958 36 H 0.011 0.989 37 H 0.053 0.947 38 H 0.131 0.869 39 H 0.150 0.850 40 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -18.455 -8.487 12.446 23.823 hybrid contribution 0.221 1.038 -1.493 1.832 sum -18.234 -7.449 10.953 22.538 Atomic orbital electron populations 1.20624 0.82175 1.05812 1.05415 1.21717 0.97169 0.84540 1.05022 1.20749 0.91988 0.88224 1.16404 1.98322 1.90631 1.12902 1.97310 1.21617 0.93869 0.90437 1.12577 1.16833 0.81526 0.86028 0.76824 1.90746 1.86704 1.13699 1.53293 1.49100 1.04595 1.09361 1.70041 1.22946 0.98500 0.78847 1.00814 1.23615 0.90447 0.98184 0.85022 0.84603 1.24097 1.00025 0.94675 0.97638 1.24277 0.80220 0.98248 0.97312 0.86268 1.21507 0.95504 0.85289 0.91404 1.45503 1.70310 1.05404 1.12851 1.19593 1.30459 0.92661 0.93024 0.88597 1.25680 1.03067 0.97353 1.00360 1.70180 1.54198 1.12678 1.23742 0.85005 0.76997 0.78691 0.78630 1.18071 1.22889 1.22215 1.73756 1.03264 1.12812 1.18882 1.45958 1.01742 1.09252 1.49122 1.22768 1.03268 0.73561 1.06848 0.87772 0.89453 0.87380 0.89604 0.93656 0.89398 0.88126 0.95846 0.98930 0.94743 0.86909 0.85019 0.88078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.84 9.99 71.23 0.71 -0.13 16 2 C 0.04 0.90 6.94 41.33 0.29 1.19 16 3 C -0.14 -4.23 6.79 22.45 0.15 -4.08 16 4 Cl -0.02 -0.62 27.93 -2.72 -0.08 -0.69 16 5 C -0.03 -0.95 6.99 42.45 0.30 -0.65 16 6 C 0.60 25.87 7.90 86.73 0.69 26.56 16 7 O -0.57 -27.01 16.22 -3.94 -0.06 -27.08 16 8 N -0.60 -24.76 2.95 -772.96 -2.28 -27.04 16 9 C 0.11 4.19 4.96 86.97 0.43 4.62 16 10 C 0.13 4.98 5.51 46.87 0.26 5.24 16 11 H 0.14 4.24 8.14 -2.39 -0.02 4.22 16 12 C -0.13 -4.20 6.83 33.59 0.23 -3.97 16 13 C 0.10 4.26 5.24 46.93 0.25 4.50 16 14 H 0.12 4.84 8.05 -2.39 -0.02 4.82 16 15 C 0.19 9.92 4.76 87.17 0.42 10.34 16 16 N -0.62 -30.93 3.02 -648.87 -1.96 -32.89 16 17 C -0.23 -12.46 10.38 84.03 0.87 -11.59 16 18 H 0.10 4.81 7.83 -2.91 -0.02 4.79 16 19 C -0.07 -4.15 5.49 84.86 0.47 -3.69 16 20 N -0.96 -60.03 10.56 21.65 0.23 -59.80 16 21 Si 0.98 46.12 29.55 68.60 2.03 48.14 16 22 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 23 H -0.30 -14.53 7.11 99.48 0.71 -13.83 16 24 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 25 N -0.25 -7.75 9.74 -48.17 -0.47 -8.22 16 26 N -0.27 -5.82 3.72 -355.38 -1.32 -7.14 16 27 C 0.07 0.63 11.12 127.77 1.42 2.05 16 28 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.09 0.99 8.04 -2.38 -0.02 0.97 16 30 H 0.11 0.41 7.02 -2.39 -0.02 0.39 16 31 H 0.09 2.68 7.74 -2.39 -0.02 2.66 16 32 H 0.04 1.93 7.92 -2.38 -0.02 1.92 16 33 H 0.09 2.95 8.14 -2.39 -0.02 2.93 16 34 H 0.10 2.75 8.14 -2.39 -0.02 2.73 16 35 H 0.02 1.36 7.47 -2.39 -0.02 1.34 16 36 H -0.01 -0.47 7.67 -2.39 -0.02 -0.49 16 37 H 0.24 14.96 8.31 -92.71 -0.77 14.19 16 38 H 0.11 0.48 8.14 -2.39 -0.02 0.46 16 39 H 0.13 0.22 6.98 -2.39 -0.02 0.20 16 40 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 Total: -1.00 -82.59 343.78 3.62 -78.97 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: 1.07 Total: 5.36 kcal Atomic # 6 Polarization: 23.92 SS G_CDS: 6.47 Total: 30.39 kcal Atomic # 7 Polarization: -129.29 SS G_CDS: -5.80 Total: -135.09 kcal Atomic # 8 Polarization: -27.01 SS G_CDS: -0.06 Total: -27.08 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 2.03 Total: 48.14 kcal Atomic # 17 Polarization: -0.62 SS G_CDS: -0.08 Total: -0.69 kcal Total: -82.59 3.62 -78.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032656522.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.111 kcal (2) G-P(sol) polarization free energy of solvation -82.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds