Wall clock time and date at job start Tue Mar 31 2020 13:51:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38071 * 126.27971 * 2 1 4 4 C 1.47380 * 126.42404 * 0.02562 * 3 2 1 5 5 O 1.21615 * 120.00412 * 270.17264 * 4 3 2 6 6 N 1.34781 * 120.00095 * 90.17509 * 4 3 2 7 7 C 1.47871 * 126.94117 * 0.02562 * 6 4 3 8 8 C 1.56018 * 105.10403 * 181.98144 * 7 6 4 9 9 H 1.08995 * 116.24717 * 158.83482 * 8 7 6 10 10 C 1.57087 * 99.60767 * 32.80682 * 8 7 6 11 11 C 1.49290 * 126.94568 * 179.71005 * 6 4 3 12 12 H 1.09001 * 116.15468 * 15.86038 * 11 6 4 13 13 C 1.58428 * 103.69947 * 246.54239 * 11 6 4 14 14 N 1.47869 * 104.83305 * 288.54744 * 13 11 6 15 15 C 1.36943 * 126.94483 * 182.30298 * 14 13 11 16 16 H 1.07994 * 119.99932 * 173.67834 * 15 14 13 17 17 C 1.38816 * 119.99727 * 353.68045 * 15 14 13 18 18 N 1.31617 * 120.00131 * 6.42738 * 17 15 14 19 19 Si 1.86807 * 119.99631 * 186.42924 * 17 15 14 20 20 H 1.48500 * 109.46944 * 94.98329 * 19 17 15 21 21 H 1.48499 * 109.46874 * 214.98380 * 19 17 15 22 22 H 1.48502 * 109.47109 * 334.98200 * 19 17 15 23 23 C 1.41395 * 107.15430 * 180.13502 * 3 2 1 24 24 Cl 1.73596 * 126.00596 * 179.89361 * 23 3 2 25 25 N 1.30532 * 107.98830 * 359.62489 * 23 3 2 26 26 N 1.34234 * 126.28108 * 179.72107 * 2 1 3 27 27 C 1.46495 * 125.73656 * 359.97438 * 26 2 1 28 28 H 1.09007 * 109.47276 * 270.30176 * 1 2 3 29 29 H 1.08999 * 109.47008 * 30.29966 * 1 2 3 30 30 H 1.08993 * 109.47125 * 150.29998 * 1 2 3 31 31 H 1.08995 * 110.31886 * 300.89111 * 7 6 4 32 32 H 1.09004 * 110.31468 * 63.07827 * 7 6 4 33 33 H 1.09003 * 112.36418 * 64.27225 * 10 8 7 34 34 H 1.08998 * 112.36827 * 191.71511 * 10 8 7 35 35 H 1.08998 * 110.19337 * 169.85677 * 13 11 6 36 36 H 1.09002 * 110.79083 * 47.53955 * 13 11 6 37 37 H 0.96998 * 119.99393 * 179.97438 * 18 17 15 38 38 H 1.09005 * 109.47390 * 269.97064 * 27 26 2 39 39 H 1.08991 * 109.47378 * 29.97517 * 27 26 2 40 40 H 1.09005 * 109.46709 * 149.97499 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3240 1.1130 0.0000 4 6 1.8858 2.5202 0.0005 5 8 1.7016 3.1002 -1.0524 6 7 1.6893 3.1644 1.1680 7 6 1.8664 2.6125 2.5284 8 6 1.4552 3.7680 3.4926 9 1 1.1726 3.4746 4.5036 10 6 0.3391 4.4505 2.6230 11 6 1.2550 4.5812 1.3490 12 1 0.8255 5.0677 0.4733 13 6 2.5181 5.2803 2.0016 14 7 2.5738 4.7501 3.3809 15 6 3.4703 5.0912 4.3582 16 1 3.3470 4.7098 5.3610 17 6 4.5376 5.9272 4.0599 18 7 4.6188 6.4932 2.8744 19 14 5.8585 6.2488 5.3410 20 1 6.9916 5.3126 5.1295 21 1 6.3415 7.6473 5.2137 22 1 5.2925 6.0423 6.6983 23 6 3.6599 0.6498 -0.0032 24 17 5.0842 1.6422 -0.0071 25 7 3.6340 -0.6553 0.0032 26 7 2.3013 -1.0821 0.0053 27 6 1.8491 -2.4755 0.0126 28 1 -0.3634 0.0054 1.0277 29 1 -0.3633 0.8873 -0.5185 30 1 -0.3633 -0.8926 -0.5091 31 1 1.2174 1.7490 2.6739 32 1 2.9080 2.3359 2.6918 33 1 -0.5161 3.7953 2.4572 34 1 0.0401 5.4209 3.0191 35 1 2.3835 6.3618 2.0170 36 1 3.4273 5.0206 1.4594 37 1 5.3644 7.0777 2.6662 38 1 1.7377 -2.8160 1.0421 39 1 0.8901 -2.5489 -0.5001 40 1 2.5831 -3.0983 -0.4987 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032756274.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:33 Heat of formation + Delta-G solvation = 79.023797 kcal Electronic energy + Delta-G solvation = -26153.553584 eV Core-core repulsion = 22418.202879 eV Total energy + Delta-G solvation = -3735.350705 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.109 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.65355 -41.26347 -39.10123 -37.98372 -35.42317 -34.52426 -33.59809 -32.80384 -30.66457 -30.17510 -28.56387 -27.69092 -26.95427 -25.33691 -23.65910 -22.03244 -21.42712 -21.14075 -19.99147 -19.00335 -18.12687 -17.61228 -17.28791 -16.81831 -16.43788 -16.12598 -15.95901 -15.67967 -14.99021 -14.86340 -14.23907 -14.16349 -14.00245 -13.81488 -13.71933 -13.46064 -13.27394 -13.17176 -13.12421 -12.81056 -12.73544 -12.68988 -12.60293 -12.29960 -12.09626 -12.01825 -11.88436 -11.83082 -11.50533 -11.07577 -10.70193 -10.33735 -9.74041 -9.51777 -8.86155 -7.83313 -5.17124 0.30775 0.46048 0.99681 1.45325 1.47430 1.48571 1.55694 1.66672 2.15509 2.49286 3.33656 3.36900 3.46125 3.58198 3.72322 3.89458 3.94037 4.02372 4.05747 4.23118 4.37125 4.41253 4.57787 4.64624 4.68424 4.70472 4.74161 4.81108 4.92841 4.99096 5.02428 5.08246 5.16914 5.30489 5.47616 5.60284 5.69925 5.79462 6.13337 6.18333 6.64671 7.05716 7.14896 7.74110 8.45327 9.28188 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.015091 B = 0.004671 C = 0.004156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.008292 B = 5993.000932 C = 6735.071447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.155 3.845 3 C -0.296 4.296 4 C 0.613 3.387 5 O -0.585 6.585 6 N -0.594 5.594 7 C 0.100 3.900 8 C 0.136 3.864 9 H 0.134 0.866 10 C -0.122 4.122 11 C 0.099 3.901 12 H 0.120 0.880 13 C 0.186 3.814 14 N -0.615 5.615 15 C -0.228 4.228 16 H 0.094 0.906 17 C -0.067 4.067 18 N -0.953 5.953 19 Si 0.969 3.031 20 H -0.297 1.297 21 H -0.300 1.300 22 H -0.259 1.259 23 C 0.138 3.862 24 Cl -0.001 7.001 25 N -0.304 5.304 26 N -0.338 5.338 27 C 0.083 3.917 28 H 0.116 0.884 29 H 0.079 0.921 30 H 0.118 0.882 31 H 0.094 0.906 32 H 0.034 0.966 33 H 0.111 0.889 34 H 0.084 0.916 35 H 0.015 0.985 36 H -0.002 1.002 37 H 0.242 0.758 38 H 0.103 0.897 39 H 0.131 0.869 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.136 -19.691 -2.627 24.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.022 3.978 3 C -0.311 4.311 4 C 0.401 3.599 5 O -0.466 6.466 6 N -0.325 5.325 7 C -0.024 4.024 8 C 0.029 3.971 9 H 0.152 0.848 10 C -0.161 4.161 11 C -0.004 4.004 12 H 0.137 0.863 13 C 0.060 3.940 14 N -0.340 5.340 15 C -0.357 4.357 16 H 0.112 0.888 17 C -0.260 4.260 18 N -0.602 5.602 19 Si 0.798 3.202 20 H -0.224 1.224 21 H -0.228 1.228 22 H -0.183 1.183 23 C -0.053 4.053 24 Cl 0.026 6.974 25 N -0.130 5.130 26 N -0.120 5.120 27 C -0.055 4.055 28 H 0.134 0.866 29 H 0.098 0.902 30 H 0.137 0.863 31 H 0.112 0.888 32 H 0.053 0.947 33 H 0.129 0.871 34 H 0.103 0.897 35 H 0.033 0.967 36 H 0.016 0.984 37 H 0.052 0.948 38 H 0.122 0.878 39 H 0.149 0.851 40 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -13.202 -20.442 -3.168 24.540 hybrid contribution 1.777 1.679 0.148 2.449 sum -11.426 -18.763 -3.019 22.175 Atomic orbital electron populations 1.20821 0.82271 1.06001 1.06114 1.21877 0.96476 0.84258 0.95235 1.19745 0.91627 0.94268 1.25509 1.16983 0.75978 0.84870 0.82034 1.90716 1.54554 1.69256 1.32090 1.49164 1.64590 1.12985 1.05767 1.23092 0.99955 0.98084 0.81280 1.23579 0.87559 0.88152 0.97769 0.84811 1.24083 0.96465 1.02203 0.93346 1.24792 0.95877 0.81435 0.98265 0.86267 1.21987 0.92666 0.94478 0.84842 1.45429 1.33033 1.46171 1.09340 1.19497 1.01849 1.23517 0.90807 0.88790 1.25605 1.00976 1.00753 0.98651 1.70157 1.32042 1.35387 1.22609 0.85186 0.79535 0.76090 0.79359 1.22446 1.22759 1.18287 1.22618 0.88683 0.90975 1.02982 1.98433 1.36651 1.65436 1.96840 1.77072 0.99188 1.09675 1.27038 1.48500 1.01411 1.08265 1.53842 1.22594 1.03030 0.73708 1.06150 0.86604 0.90175 0.86343 0.88778 0.94703 0.87067 0.89744 0.96675 0.98355 0.94834 0.87832 0.85120 0.88228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.12 9.92 71.24 0.71 -0.42 16 2 C 0.15 3.51 7.01 42.15 0.30 3.81 16 3 C -0.30 -9.93 5.15 -20.13 -0.10 -10.03 16 4 C 0.61 23.95 7.25 86.65 0.63 24.58 16 5 O -0.59 -26.81 17.45 -4.08 -0.07 -26.88 16 6 N -0.59 -22.08 2.95 -766.73 -2.26 -24.34 16 7 C 0.10 3.37 5.97 87.16 0.52 3.89 16 8 C 0.14 4.67 5.47 46.93 0.26 4.93 16 9 H 0.13 3.82 8.14 -2.39 -0.02 3.80 16 10 C -0.12 -3.60 6.86 33.60 0.23 -3.37 16 11 C 0.10 3.81 5.35 47.96 0.26 4.07 16 12 H 0.12 4.46 8.05 -2.39 -0.02 4.44 16 13 C 0.19 9.44 4.89 88.06 0.43 9.87 16 14 N -0.62 -29.83 3.02 -643.57 -1.95 -31.78 16 15 C -0.23 -12.24 10.36 84.03 0.87 -11.37 16 16 H 0.09 4.67 7.84 -2.91 -0.02 4.65 16 17 C -0.07 -3.83 5.49 84.86 0.47 -3.36 16 18 N -0.95 -59.19 10.60 21.65 0.23 -58.96 16 19 Si 0.97 46.30 29.56 68.60 2.03 48.32 16 20 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 21 H -0.30 -14.66 7.11 99.48 0.71 -13.95 16 22 H -0.26 -11.29 7.11 99.48 0.71 -10.59 16 23 C 0.14 4.97 7.89 85.66 0.68 5.64 16 24 Cl 0.00 -0.05 29.19 -2.72 -0.08 -0.13 16 25 N -0.30 -9.42 12.50 -48.95 -0.61 -10.03 16 26 N -0.34 -7.17 3.98 -354.32 -1.41 -8.58 16 27 C 0.08 0.65 11.24 127.77 1.44 2.09 16 28 H 0.12 0.88 8.14 -2.38 -0.02 0.86 16 29 H 0.08 1.26 7.97 -2.39 -0.02 1.24 16 30 H 0.12 0.48 7.05 -2.39 -0.02 0.47 16 31 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 32 H 0.03 1.43 8.14 -2.38 -0.02 1.41 16 33 H 0.11 2.40 8.14 -2.39 -0.02 2.38 16 34 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 35 H 0.02 0.85 7.64 -2.39 -0.02 0.84 16 36 H 0.00 -0.11 7.53 -2.39 -0.02 -0.13 16 37 H 0.24 14.91 8.31 -92.71 -0.77 14.14 16 38 H 0.10 0.46 8.14 -2.38 -0.02 0.44 16 39 H 0.13 0.08 7.01 -2.39 -0.02 0.06 16 40 H 0.10 0.75 8.14 -2.38 -0.02 0.73 16 Total: -1.00 -83.72 349.95 3.61 -80.10 By element: Atomic # 1 Polarization: 0.90 SS G_CDS: 1.06 Total: 1.96 kcal Atomic # 6 Polarization: 23.65 SS G_CDS: 6.67 Total: 30.32 kcal Atomic # 7 Polarization: -127.70 SS G_CDS: -6.00 Total: -133.70 kcal Atomic # 8 Polarization: -26.81 SS G_CDS: -0.07 Total: -26.88 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 2.03 Total: 48.32 kcal Atomic # 17 Polarization: -0.05 SS G_CDS: -0.08 Total: -0.13 kcal Total: -83.72 3.61 -80.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032756274.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.129 kcal (2) G-P(sol) polarization free energy of solvation -83.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds