Wall clock time and date at job start Tue Mar 31 2020 14:00:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31925 * 119.01656 * 2 1 4 4 C 1.32138 * 121.05576 * 180.02562 * 3 2 1 5 5 C 1.38982 * 119.12622 * 359.97438 * 4 3 2 6 6 Cl 1.73600 * 120.88750 * 180.02562 * 5 4 3 7 7 C 1.39633 * 118.22613 * 0.02562 * 5 4 3 8 8 C 1.48368 * 120.56395 * 180.02562 * 7 5 4 9 9 O 1.21490 * 119.99800 * 5.63082 * 8 7 5 10 10 N 1.34779 * 120.00142 * 185.63212 * 8 7 5 11 11 C 1.46491 * 119.99986 * 5.53342 * 10 8 7 12 12 C 1.46507 * 119.99886 * 185.53673 * 10 8 7 13 13 H 1.08995 * 110.88329 * 356.11805 * 12 10 8 14 14 C 1.55158 * 111.00262 * 119.99669 * 12 10 8 15 15 C 1.54330 * 102.93909 * 82.57243 * 14 12 10 16 16 N 1.47026 * 107.27159 * 22.19010 * 15 14 12 17 17 C 1.36933 * 125.64748 * 181.02374 * 16 15 14 18 18 H 1.07995 * 120.00144 * 176.72307 * 17 16 15 19 19 C 1.38812 * 119.99964 * 356.71448 * 17 16 15 20 20 N 1.31620 * 120.00331 * 216.71117 * 19 17 16 21 21 Si 1.86804 * 119.99827 * 36.99056 * 19 17 16 22 22 H 1.48494 * 109.47306 * 267.65761 * 21 19 17 23 23 H 1.48501 * 109.47111 * 27.65644 * 21 19 17 24 24 H 1.48500 * 109.46884 * 147.65434 * 21 19 17 25 25 C 1.47431 * 108.70233 * 1.28878 * 16 15 14 26 26 N 1.31521 * 119.01849 * 180.29075 * 2 1 3 27 27 H 1.08993 * 109.47204 * 90.00718 * 1 2 3 28 28 H 1.09006 * 109.47096 * 210.00459 * 1 2 3 29 29 H 1.08999 * 109.47422 * 330.00126 * 1 2 3 30 30 H 1.08010 * 120.43303 * 180.02562 * 4 3 2 31 31 H 1.09001 * 109.47377 * 275.35084 * 11 10 8 32 32 H 1.09004 * 109.47249 * 35.34695 * 11 10 8 33 33 H 1.09000 * 109.47142 * 155.34655 * 11 10 8 34 34 H 1.08998 * 110.72151 * 324.21158 * 14 12 10 35 35 H 1.08995 * 110.87237 * 201.00482 * 14 12 10 36 36 H 1.08999 * 109.87940 * 262.77421 * 15 14 12 37 37 H 1.08991 * 110.01021 * 141.68046 * 15 14 12 38 38 H 0.96997 * 119.99337 * 5.29090 * 20 19 17 39 39 H 1.08993 * 110.36867 * 94.48013 * 25 16 15 40 40 H 1.08996 * 110.36042 * 216.80758 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1469 1.1537 0.0000 4 6 3.4675 1.2007 -0.0005 5 6 4.1867 0.0114 -0.0005 6 17 5.9227 0.0199 -0.0005 7 6 3.4757 -1.1903 -0.0005 8 6 4.1911 -2.4902 0.0001 9 8 5.4013 -2.5174 0.1038 10 7 3.4985 -3.6407 -0.1145 11 6 2.0549 -3.6051 -0.3610 12 6 4.1894 -4.9268 0.0076 13 1 5.2637 -4.7816 0.1206 14 6 3.6136 -5.7578 1.1846 15 6 2.3668 -6.4209 0.5621 16 7 2.5627 -6.4373 -0.8950 17 6 1.6729 -6.9252 -1.8144 18 1 1.8876 -6.8435 -2.8697 19 6 0.4951 -7.5248 -1.3901 20 7 0.0126 -8.5617 -2.0416 21 14 -0.4092 -6.8554 0.1011 22 1 0.0450 -7.5733 1.3190 23 1 -0.1215 -5.4057 0.2448 24 1 -1.8701 -7.0549 -0.0753 25 6 3.8785 -5.8473 -1.2017 26 7 2.1450 -1.1501 -0.0058 27 1 -0.3633 -0.0001 -1.0276 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3634 0.8900 0.5138 30 1 3.9811 2.1508 -0.0001 31 1 1.5270 -3.4973 0.5865 32 1 1.8174 -2.7602 -1.0074 33 1 1.7462 -4.5313 -0.8457 34 1 3.3317 -5.1086 2.0135 35 1 4.3281 -6.5124 1.5133 36 1 1.4767 -5.8427 0.8099 37 1 2.2618 -7.4402 0.9335 38 1 0.5180 -8.9545 -2.7704 39 1 4.6332 -6.6287 -1.2905 40 1 3.8271 -5.2623 -2.1199 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033467872.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:00:18 Heat of formation + Delta-G solvation = 78.239201 kcal Electronic energy + Delta-G solvation = -26070.885523 eV Core-core repulsion = 22335.500795 eV Total energy + Delta-G solvation = -3735.384728 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.109 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.66551 -39.80491 -37.82314 -36.88709 -34.86163 -33.91298 -33.27991 -32.29944 -29.74879 -28.66332 -28.45935 -26.60939 -25.61625 -23.90586 -23.36008 -21.34565 -20.57677 -19.32250 -18.42043 -17.52307 -17.31276 -16.56308 -16.23287 -16.04964 -15.39298 -14.93796 -14.76642 -14.44013 -13.97532 -13.52573 -13.39032 -13.31425 -12.90825 -12.76401 -12.67600 -12.31917 -11.99741 -11.95941 -11.67277 -11.61336 -11.45076 -11.28082 -11.17371 -10.95636 -10.80773 -10.67313 -10.24540 -10.21127 -9.77453 -9.45843 -9.29644 -9.11115 -8.51434 -8.25604 -7.10318 -6.45645 -3.16451 0.07962 0.41915 1.70737 2.61348 2.84338 3.39404 3.42621 3.47542 3.51042 3.61091 3.63904 4.05408 4.31041 4.59949 4.64179 4.87140 4.97926 5.11080 5.22275 5.29869 5.38984 5.41899 5.49047 5.55165 5.76324 5.87790 5.91947 6.01907 6.12559 6.24452 6.31184 6.33043 6.46724 6.51932 6.73718 6.77814 6.88702 7.49749 7.56958 7.67201 8.11230 8.28893 8.96413 9.55553 10.22272 11.02054 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.016299 B = 0.004483 C = 0.003758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.516353 B = 6243.895608 C = 7449.050021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.313 3.687 3 N -0.495 5.495 4 C 0.164 3.836 5 C -0.111 4.111 6 Cl -0.003 7.003 7 C 0.152 3.848 8 C 0.555 3.445 9 O -0.518 6.518 10 N -0.563 5.563 11 C 0.063 3.937 12 C 0.118 3.882 13 H 0.108 0.892 14 C -0.137 4.137 15 C 0.108 3.892 16 N -0.604 5.604 17 C -0.350 4.350 18 H 0.080 0.920 19 C -0.004 4.004 20 N -0.896 5.896 21 Si 1.036 2.964 22 H -0.295 1.295 23 H -0.284 1.284 24 H -0.299 1.299 25 C 0.131 3.869 26 N -0.466 5.466 27 H 0.092 0.908 28 H 0.093 0.907 29 H 0.089 0.911 30 H 0.183 0.817 31 H 0.052 0.948 32 H 0.077 0.923 33 H 0.116 0.884 34 H 0.069 0.931 35 H 0.080 0.920 36 H 0.036 0.964 37 H 0.040 0.960 38 H 0.267 0.733 39 H 0.041 0.959 40 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.850 19.073 5.956 20.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.047 3.953 3 N -0.210 5.210 4 C -0.004 4.004 5 C -0.144 4.144 6 Cl 0.026 6.974 7 C 0.004 3.996 8 C 0.340 3.660 9 O -0.394 6.394 10 N -0.293 5.293 11 C -0.080 4.080 12 C 0.014 3.986 13 H 0.126 0.874 14 C -0.176 4.176 15 C -0.016 4.016 16 N -0.332 5.332 17 C -0.475 4.475 18 H 0.098 0.902 19 C -0.207 4.207 20 N -0.534 5.534 21 Si 0.867 3.133 22 H -0.223 1.223 23 H -0.211 1.211 24 H -0.227 1.227 25 C 0.004 3.996 26 N -0.184 5.184 27 H 0.111 0.889 28 H 0.112 0.888 29 H 0.108 0.892 30 H 0.200 0.800 31 H 0.070 0.930 32 H 0.096 0.904 33 H 0.134 0.866 34 H 0.088 0.912 35 H 0.099 0.901 36 H 0.053 0.947 37 H 0.058 0.942 38 H 0.077 0.923 39 H 0.059 0.941 40 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 4.197 18.751 6.801 20.383 hybrid contribution 2.291 0.324 -0.837 2.461 sum 6.488 19.075 5.964 21.013 Atomic orbital electron populations 1.20669 0.84537 1.04815 1.04610 1.23599 0.98880 0.82987 0.89867 1.68308 1.08898 1.30511 1.13262 1.23388 0.89255 0.97303 0.90500 1.22851 0.89762 0.95952 1.05796 1.98433 1.04317 1.98611 1.95991 1.21735 0.89647 0.94278 0.93977 1.17734 0.86480 0.82709 0.79092 1.90836 1.12164 1.86158 1.50223 1.47664 1.10349 1.04487 1.66842 1.22698 0.77552 1.05936 1.01776 1.22469 0.97105 0.81839 0.97138 0.87404 1.22926 0.98673 0.98846 0.97119 1.21705 0.95628 0.98571 0.85723 1.44845 1.15403 1.72219 1.00722 1.19841 1.01966 1.37077 0.88643 0.90235 1.25517 0.96870 0.94964 1.03344 1.70881 1.44256 1.15594 1.22671 0.84375 0.76265 0.76154 0.76463 1.22309 1.21119 1.22668 1.21924 0.89122 0.93548 0.95013 1.69080 1.07361 1.29503 1.12444 0.88922 0.88848 0.89210 0.79979 0.92989 0.90435 0.86625 0.91237 0.90106 0.94651 0.94200 0.92300 0.94145 0.93369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.75 10.31 36.01 0.37 -0.38 16 2 C 0.31 3.67 7.64 -157.32 -1.20 2.47 16 3 N -0.49 -5.52 10.31 -10.70 -0.11 -5.63 16 4 C 0.16 1.66 11.14 -17.14 -0.19 1.47 16 5 C -0.11 -1.37 6.40 -38.79 -0.25 -1.62 16 6 Cl 0.00 -0.03 26.26 -51.86 -1.36 -1.39 16 7 C 0.15 2.22 6.60 -82.61 -0.55 1.68 16 8 C 0.56 9.20 7.65 -12.09 -0.09 9.11 16 9 O -0.52 -9.13 13.57 5.37 0.07 -9.06 16 10 N -0.56 -9.67 2.91 -172.26 -0.50 -10.17 16 11 C 0.06 1.10 7.44 59.84 0.45 1.55 16 12 C 0.12 2.03 3.67 -65.66 -0.24 1.79 16 13 H 0.11 1.76 7.02 -51.93 -0.36 1.40 16 14 C -0.14 -2.29 6.48 -24.89 -0.16 -2.45 16 15 C 0.11 2.26 3.91 -3.06 -0.01 2.25 16 16 N -0.60 -13.93 1.84 -169.94 -0.31 -14.24 16 17 C -0.35 -9.45 9.88 -15.06 -0.15 -9.60 16 18 H 0.08 2.29 8.06 -52.49 -0.42 1.87 16 19 C 0.00 -0.11 5.39 -17.43 -0.09 -0.20 16 20 N -0.90 -26.94 13.70 55.49 0.76 -26.18 16 21 Si 1.04 24.96 24.85 -169.99 -4.23 20.73 16 22 H -0.30 -6.94 6.91 56.52 0.39 -6.54 16 23 H -0.28 -6.23 6.11 56.52 0.35 -5.88 16 24 H -0.30 -7.37 7.11 56.52 0.40 -6.97 16 25 C 0.13 2.57 6.47 -2.41 -0.02 2.55 16 26 N -0.47 -6.46 6.25 -7.31 -0.05 -6.51 16 27 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.18 1.17 8.06 -52.48 -0.42 0.75 16 31 H 0.05 0.89 8.00 -51.93 -0.42 0.48 16 32 H 0.08 1.29 5.76 -51.93 -0.30 0.99 16 33 H 0.12 2.42 4.14 -51.93 -0.22 2.20 16 34 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.04 0.77 3.32 -51.93 -0.17 0.60 16 37 H 0.04 0.89 7.48 -51.93 -0.39 0.50 16 38 H 0.27 7.96 8.73 -40.82 -0.36 7.60 16 39 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 LS Contribution 330.38 15.07 4.98 4.98 Total: -1.00 -30.93 330.38 -7.76 -38.69 By element: Atomic # 1 Polarization: 5.05 SS G_CDS: -4.88 Total: 0.17 kcal Atomic # 6 Polarization: 10.75 SS G_CDS: -2.13 Total: 8.61 kcal Atomic # 7 Polarization: -62.52 SS G_CDS: -0.21 Total: -62.73 kcal Atomic # 8 Polarization: -9.13 SS G_CDS: 0.07 Total: -9.06 kcal Atomic # 14 Polarization: 24.96 SS G_CDS: -4.23 Total: 20.73 kcal Atomic # 17 Polarization: -0.03 SS G_CDS: -1.36 Total: -1.39 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.93 -7.76 -38.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033467872.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.930 kcal (2) G-P(sol) polarization free energy of solvation -30.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.690 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds