Wall clock time and date at job start Tue Mar 31 2020 14:00:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31925 * 119.01656 * 2 1 4 4 C 1.32138 * 121.05576 * 180.02562 * 3 2 1 5 5 C 1.38982 * 119.12622 * 359.97438 * 4 3 2 6 6 Cl 1.73600 * 120.88750 * 180.02562 * 5 4 3 7 7 C 1.39633 * 118.22613 * 0.02562 * 5 4 3 8 8 C 1.48368 * 120.56395 * 180.02562 * 7 5 4 9 9 O 1.21490 * 119.99800 * 5.63082 * 8 7 5 10 10 N 1.34779 * 120.00142 * 185.63212 * 8 7 5 11 11 C 1.46491 * 119.99986 * 5.53342 * 10 8 7 12 12 C 1.46507 * 119.99886 * 185.53673 * 10 8 7 13 13 H 1.08995 * 110.88329 * 356.11805 * 12 10 8 14 14 C 1.55158 * 111.00262 * 119.99669 * 12 10 8 15 15 C 1.54330 * 102.93909 * 82.57243 * 14 12 10 16 16 N 1.47026 * 107.27159 * 22.19010 * 15 14 12 17 17 C 1.36933 * 125.64748 * 181.02374 * 16 15 14 18 18 H 1.07995 * 120.00144 * 176.72307 * 17 16 15 19 19 C 1.38812 * 119.99964 * 356.71448 * 17 16 15 20 20 N 1.31620 * 120.00331 * 216.71117 * 19 17 16 21 21 Si 1.86804 * 119.99827 * 36.99056 * 19 17 16 22 22 H 1.48494 * 109.47306 * 267.65761 * 21 19 17 23 23 H 1.48501 * 109.47111 * 27.65644 * 21 19 17 24 24 H 1.48500 * 109.46884 * 147.65434 * 21 19 17 25 25 C 1.47431 * 108.70233 * 1.28878 * 16 15 14 26 26 N 1.31521 * 119.01849 * 180.29075 * 2 1 3 27 27 H 1.08993 * 109.47204 * 90.00718 * 1 2 3 28 28 H 1.09006 * 109.47096 * 210.00459 * 1 2 3 29 29 H 1.08999 * 109.47422 * 330.00126 * 1 2 3 30 30 H 1.08010 * 120.43303 * 180.02562 * 4 3 2 31 31 H 1.09001 * 109.47377 * 275.35084 * 11 10 8 32 32 H 1.09004 * 109.47249 * 35.34695 * 11 10 8 33 33 H 1.09000 * 109.47142 * 155.34655 * 11 10 8 34 34 H 1.08998 * 110.72151 * 324.21158 * 14 12 10 35 35 H 1.08995 * 110.87237 * 201.00482 * 14 12 10 36 36 H 1.08999 * 109.87940 * 262.77421 * 15 14 12 37 37 H 1.08991 * 110.01021 * 141.68046 * 15 14 12 38 38 H 0.96997 * 119.99337 * 5.29090 * 20 19 17 39 39 H 1.08993 * 110.36867 * 94.48013 * 25 16 15 40 40 H 1.08996 * 110.36042 * 216.80758 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1469 1.1537 0.0000 4 6 3.4675 1.2007 -0.0005 5 6 4.1867 0.0114 -0.0005 6 17 5.9227 0.0199 -0.0005 7 6 3.4757 -1.1903 -0.0005 8 6 4.1911 -2.4902 0.0001 9 8 5.4013 -2.5174 0.1038 10 7 3.4985 -3.6407 -0.1145 11 6 2.0549 -3.6051 -0.3610 12 6 4.1894 -4.9268 0.0076 13 1 5.2637 -4.7816 0.1206 14 6 3.6136 -5.7578 1.1846 15 6 2.3668 -6.4209 0.5621 16 7 2.5627 -6.4373 -0.8950 17 6 1.6729 -6.9252 -1.8144 18 1 1.8876 -6.8435 -2.8697 19 6 0.4951 -7.5248 -1.3901 20 7 0.0126 -8.5617 -2.0416 21 14 -0.4092 -6.8554 0.1011 22 1 0.0450 -7.5733 1.3190 23 1 -0.1215 -5.4057 0.2448 24 1 -1.8701 -7.0549 -0.0753 25 6 3.8785 -5.8473 -1.2017 26 7 2.1450 -1.1501 -0.0058 27 1 -0.3633 -0.0001 -1.0276 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3634 0.8900 0.5138 30 1 3.9811 2.1508 -0.0001 31 1 1.5270 -3.4973 0.5865 32 1 1.8174 -2.7602 -1.0074 33 1 1.7462 -4.5313 -0.8457 34 1 3.3317 -5.1086 2.0135 35 1 4.3281 -6.5124 1.5133 36 1 1.4767 -5.8427 0.8099 37 1 2.2618 -7.4402 0.9335 38 1 0.5180 -8.9545 -2.7704 39 1 4.6332 -6.6287 -1.2905 40 1 3.8271 -5.2623 -2.1199 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033467872.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:00:18 Heat of formation + Delta-G solvation = 59.095099 kcal Electronic energy + Delta-G solvation = -26071.715674 eV Core-core repulsion = 22335.500795 eV Total energy + Delta-G solvation = -3736.214879 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.109 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.63249 -41.10819 -39.28581 -37.83829 -36.17322 -35.20154 -34.21891 -34.03953 -31.46736 -30.01413 -29.44291 -27.86095 -26.95666 -25.50571 -24.43229 -22.64339 -22.28557 -20.62812 -19.53273 -19.43409 -18.44041 -17.79109 -17.37433 -17.14824 -16.88377 -16.11832 -15.98457 -15.90516 -15.37986 -15.17751 -14.73338 -14.53428 -14.30997 -13.94450 -13.55929 -13.41974 -13.30282 -13.17451 -13.05672 -12.86688 -12.78428 -12.63197 -12.52109 -12.50128 -12.20174 -11.94584 -11.89378 -11.70786 -11.38816 -11.11117 -10.49489 -10.37650 -10.18203 -9.78850 -9.02938 -8.66543 -5.29372 -0.91719 -0.43931 0.78287 1.46795 1.47478 1.54631 1.64734 1.72947 2.41346 2.55487 2.59812 2.78428 2.93176 3.06619 3.35041 3.40590 3.67466 3.74795 3.81857 4.14776 4.19956 4.35236 4.42076 4.55868 4.69702 4.71928 4.74914 4.77915 4.78810 4.88075 4.92008 4.94578 5.16717 5.20543 5.32374 5.38494 5.54062 5.64163 6.11679 6.20635 6.63462 6.84336 6.85116 7.51915 8.18347 8.82254 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.016299 B = 0.004483 C = 0.003758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.516353 B = 6243.895608 C = 7449.050021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.309 3.691 3 N -0.495 5.495 4 C 0.180 3.820 5 C -0.115 4.115 6 Cl -0.004 7.004 7 C 0.131 3.869 8 C 0.556 3.444 9 O -0.531 6.531 10 N -0.571 5.571 11 C 0.077 3.923 12 C 0.129 3.871 13 H 0.122 0.878 14 C -0.123 4.123 15 C 0.104 3.896 16 N -0.617 5.617 17 C -0.333 4.333 18 H 0.048 0.952 19 C -0.057 4.057 20 N -0.936 5.936 21 Si 1.078 2.922 22 H -0.284 1.284 23 H -0.252 1.252 24 H -0.308 1.308 25 C 0.129 3.871 26 N -0.485 5.485 27 H 0.102 0.898 28 H 0.093 0.907 29 H 0.108 0.892 30 H 0.222 0.778 31 H 0.057 0.943 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.103 0.897 36 H 0.035 0.965 37 H 0.025 0.975 38 H 0.253 0.747 39 H 0.048 0.952 40 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.354 21.907 7.922 24.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.043 3.957 3 N -0.210 5.210 4 C 0.011 3.989 5 C -0.148 4.148 6 Cl 0.025 6.975 7 C -0.017 4.017 8 C 0.342 3.658 9 O -0.408 6.408 10 N -0.301 5.301 11 C -0.066 4.066 12 C 0.025 3.975 13 H 0.140 0.860 14 C -0.162 4.162 15 C -0.020 4.020 16 N -0.345 5.345 17 C -0.460 4.460 18 H 0.066 0.934 19 C -0.254 4.254 20 N -0.577 5.577 21 Si 0.905 3.095 22 H -0.211 1.211 23 H -0.177 1.177 24 H -0.237 1.237 25 C 0.003 3.997 26 N -0.204 5.204 27 H 0.121 0.879 28 H 0.112 0.888 29 H 0.126 0.874 30 H 0.238 0.762 31 H 0.076 0.924 32 H 0.102 0.898 33 H 0.101 0.899 34 H 0.107 0.893 35 H 0.122 0.878 36 H 0.052 0.948 37 H 0.043 0.957 38 H 0.062 0.938 39 H 0.065 0.935 40 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 4.739 21.617 8.781 23.809 hybrid contribution 2.221 -0.459 -1.550 2.747 sum 6.960 21.158 7.231 23.418 Atomic orbital electron populations 1.20809 0.82500 1.05751 1.05492 1.24168 1.00102 0.82585 0.88847 1.68443 1.09286 1.30053 1.13172 1.24014 0.88878 0.97929 0.88106 1.22966 0.89753 0.96039 1.05999 1.98434 1.04443 1.98602 1.95993 1.21505 0.90317 0.93870 0.96012 1.18005 0.86402 0.83185 0.78219 1.90819 1.12749 1.86554 1.50678 1.47688 1.10150 1.04770 1.67485 1.22463 0.77943 1.04343 1.01812 1.22345 0.97882 0.81579 0.95700 0.86016 1.22901 0.97065 0.99207 0.96994 1.21795 0.97794 0.98120 0.84272 1.44824 1.15843 1.72370 1.01439 1.19670 1.02585 1.35631 0.88157 0.93424 1.26659 0.98028 0.94813 1.05877 1.70998 1.44932 1.17812 1.23965 0.83831 0.74386 0.77464 0.73789 1.21055 1.17748 1.23686 1.22012 0.87664 0.94049 0.95931 1.68984 1.07099 1.30767 1.13507 0.87922 0.88819 0.87351 0.76198 0.92429 0.89777 0.89886 0.89345 0.87849 0.94793 0.95663 0.93844 0.93455 0.94666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.25 10.31 71.24 0.73 -0.51 16 2 C 0.31 6.45 7.64 138.79 1.06 7.51 16 3 N -0.49 -9.48 10.31 -187.76 -1.94 -11.42 16 4 C 0.18 3.04 11.14 84.83 0.94 3.98 16 5 C -0.11 -2.57 6.40 22.79 0.15 -2.43 16 6 Cl 0.00 -0.08 26.26 -2.72 -0.07 -0.16 16 7 C 0.13 3.56 6.60 41.98 0.28 3.84 16 8 C 0.56 17.49 7.65 86.94 0.67 18.15 16 9 O -0.53 -17.81 13.57 -3.68 -0.05 -17.86 16 10 N -0.57 -18.63 2.91 -817.22 -2.38 -21.01 16 11 C 0.08 2.60 7.44 127.77 0.95 3.55 16 12 C 0.13 4.17 3.67 46.46 0.17 4.34 16 13 H 0.12 3.67 7.02 -2.39 -0.02 3.66 16 14 C -0.12 -3.77 6.48 31.79 0.21 -3.56 16 15 C 0.10 4.19 3.91 86.73 0.34 4.53 16 16 N -0.62 -28.41 1.84 -691.55 -1.27 -29.68 16 17 C -0.33 -18.48 9.88 84.03 0.83 -17.65 16 18 H 0.05 2.89 8.06 -2.91 -0.02 2.86 16 19 C -0.06 -3.26 5.39 84.86 0.46 -2.80 16 20 N -0.94 -58.30 13.70 21.65 0.30 -58.00 16 21 Si 1.08 50.57 24.85 68.60 1.71 52.28 16 22 H -0.28 -12.69 6.91 99.48 0.69 -12.00 16 23 H -0.25 -10.38 6.11 99.48 0.61 -9.78 16 24 H -0.31 -14.86 7.11 99.48 0.71 -14.15 16 25 C 0.13 5.02 6.47 86.93 0.56 5.58 16 26 N -0.49 -12.47 6.25 -177.05 -1.11 -13.58 16 27 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.09 1.35 8.14 -2.38 -0.02 1.33 16 29 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.22 1.88 8.06 -2.91 -0.02 1.85 16 31 H 0.06 1.85 8.00 -2.39 -0.02 1.83 16 32 H 0.08 2.71 5.76 -2.38 -0.01 2.70 16 33 H 0.08 3.40 4.14 -2.39 -0.01 3.39 16 34 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 35 H 0.10 2.73 8.14 -2.39 -0.02 2.71 16 36 H 0.03 1.40 3.32 -2.39 -0.01 1.39 16 37 H 0.03 1.10 7.48 -2.39 -0.02 1.08 16 38 H 0.25 15.85 8.73 -92.71 -0.81 15.04 16 39 H 0.05 1.78 8.14 -2.39 -0.02 1.77 16 40 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -68.45 330.38 3.45 -65.00 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: 0.92 Total: 9.88 kcal Atomic # 6 Polarization: 17.20 SS G_CDS: 7.34 Total: 24.55 kcal Atomic # 7 Polarization: -127.29 SS G_CDS: -6.40 Total: -133.69 kcal Atomic # 8 Polarization: -17.81 SS G_CDS: -0.05 Total: -17.86 kcal Atomic # 14 Polarization: 50.57 SS G_CDS: 1.71 Total: 52.28 kcal Atomic # 17 Polarization: -0.08 SS G_CDS: -0.07 Total: -0.16 kcal Total: -68.45 3.45 -65.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033467872.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.096 kcal (2) G-P(sol) polarization free energy of solvation -68.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds