Wall clock time and date at job start Tue Mar 31 2020 13:38:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 119.99872 * 2 1 4 4 H 1.48498 * 109.47102 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47155 * 299.99783 * 3 2 1 6 6 H 1.48500 * 109.46944 * 59.99660 * 3 2 1 7 7 C 1.38807 * 119.99902 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00282 * 180.02562 * 7 2 1 9 9 N 1.36945 * 120.00170 * 0.02562 * 7 2 1 10 10 C 1.46864 * 125.33498 * 0.02568 * 9 7 2 11 11 C 1.54471 * 106.65286 * 195.40451 * 10 9 7 12 12 C 1.53383 * 102.54362 * 332.26206 * 11 10 9 13 13 H 1.09000 * 105.68564 * 278.46117 * 12 11 10 14 14 C 1.49264 * 114.29513 * 161.96753 * 12 11 10 15 15 N 1.45655 * 114.67651 * 259.00398 * 14 12 11 16 16 C 1.34775 * 120.30047 * 143.50351 * 15 14 12 17 17 O 1.21734 * 120.00168 * 175.97015 * 16 15 14 18 18 C 1.46289 * 120.00234 * 355.97453 * 16 15 14 19 19 S 1.75831 * 125.46554 * 42.93720 * 18 16 15 20 20 C 1.70595 * 91.60827 * 179.97438 * 19 18 16 21 21 C 1.33735 * 111.04231 * 0.02562 * 20 19 18 22 22 C 1.36928 * 125.46795 * 222.63026 * 18 16 15 23 23 F 1.35095 * 123.39995 * 0.02562 * 22 18 16 24 24 C 1.46816 * 119.39402 * 323.53174 * 15 14 12 25 25 C 1.52973 * 107.39314 * 55.01254 * 24 15 14 26 26 C 1.48009 * 125.33497 * 179.71424 * 9 7 2 27 27 H 1.09003 * 110.22074 * 303.20322 * 26 9 7 28 28 H 0.96994 * 120.00268 * 0.02562 * 1 2 3 29 29 H 1.09000 * 110.02163 * 314.70175 * 10 9 7 30 30 H 1.09002 * 110.02298 * 76.10754 * 10 9 7 31 31 H 1.09012 * 110.79351 * 90.52246 * 11 10 9 32 32 H 1.08997 * 110.79743 * 213.99663 * 11 10 9 33 33 H 1.08995 * 108.44662 * 20.35594 * 14 12 11 34 34 H 1.09002 * 108.44190 * 137.66412 * 14 12 11 35 35 H 1.07998 * 124.47981 * 179.97438 * 20 19 18 36 36 H 1.07995 * 122.45597 * 180.02562 * 21 20 19 37 37 H 1.08998 * 109.87532 * 174.48218 * 24 15 14 38 38 H 1.08996 * 109.87716 * 295.47194 * 24 15 14 39 39 H 1.09004 * 109.38043 * 58.68088 * 25 24 15 40 40 H 1.08999 * 109.38430 * 178.46481 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8913 2.3964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 -0.1368 -2.5247 -0.0005 11 6 -0.4452 -3.9862 0.3930 12 6 0.8041 -4.7324 -0.0919 13 1 0.6539 -4.8964 -1.1589 14 6 0.9878 -6.0828 0.5170 15 7 1.9648 -6.1356 1.5960 16 6 1.7601 -6.9370 2.6601 17 8 2.6133 -7.0327 3.5231 18 6 0.5127 -7.6920 2.7780 19 16 -0.2846 -8.5556 1.4702 20 6 -1.5405 -9.0637 2.5070 21 6 -1.3539 -8.6034 3.7487 22 6 -0.2183 -7.8445 3.9257 23 9 0.1363 -7.3017 5.1109 24 6 3.1742 -5.3072 1.5142 25 6 2.7240 -3.8594 1.3111 26 6 1.9432 -3.7331 -0.0049 27 1 2.6060 -3.8398 -0.8637 28 1 -0.4850 0.8400 -0.0004 29 1 -0.5759 -1.8418 0.7267 30 1 -0.5305 -2.3150 -0.9951 31 1 -0.5574 -4.0807 1.4732 32 1 -1.3354 -4.3462 -0.1226 33 1 0.0267 -6.4197 0.9052 34 1 1.3007 -6.7742 -0.2655 35 1 -2.3762 -9.6754 2.2009 36 1 -2.0405 -8.8157 4.5548 37 1 3.7444 -5.3916 2.4393 38 1 3.7865 -5.6276 0.6713 39 1 2.0865 -3.5589 2.1426 40 1 3.5989 -3.2105 1.2731 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036705221.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:39 Heat of formation + Delta-G solvation = -4.676977 kcal Electronic energy + Delta-G solvation = -25904.672556 eV Core-core repulsion = 22147.816058 eV Total energy + Delta-G solvation = -3756.856499 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.105 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -48.98380 -40.30137 -38.42255 -37.41096 -35.35314 -32.73941 -32.19261 -30.19983 -29.34612 -28.20529 -25.66270 -24.74487 -23.62243 -22.83457 -21.06365 -20.28851 -19.83994 -18.78752 -17.92437 -17.02290 -16.86318 -16.47867 -15.93209 -15.41908 -15.23384 -14.83813 -14.68173 -14.59397 -14.17805 -13.82500 -13.55959 -13.15544 -13.02898 -12.82636 -12.46400 -12.29211 -12.10742 -11.96346 -11.48825 -11.37063 -11.36847 -10.97070 -10.84802 -10.74728 -10.14826 -10.14074 -10.05010 -9.83564 -9.61792 -9.51075 -9.15304 -8.70499 -8.62734 -8.46928 -6.85624 -5.69517 -3.06935 0.19796 0.98785 1.46996 1.97854 2.75370 3.14026 3.39138 3.44983 3.47142 4.05568 4.39016 4.47074 4.68265 4.77898 4.98079 5.13212 5.15276 5.33585 5.35467 5.46860 5.49995 5.58049 5.65944 5.76324 5.86925 5.92638 5.98340 6.03038 6.20450 6.29254 6.36025 6.50560 6.60684 6.67098 6.88320 7.07579 7.39338 7.52070 7.63400 7.83649 8.09869 8.29610 9.21257 9.81223 10.45228 11.38140 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.020508 B = 0.003646 C = 0.003530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.008718 B = 7677.700651 C = 7930.638455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.009 4.009 3 Si 0.911 3.089 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.222 4.222 8 H 0.078 0.922 9 N -0.599 5.599 10 C 0.167 3.833 11 C -0.136 4.136 12 C -0.106 4.106 13 H 0.068 0.932 14 C 0.119 3.881 15 N -0.591 5.591 16 C 0.591 3.409 17 O -0.527 6.527 18 C -0.307 4.307 19 S 0.270 5.730 20 C -0.225 4.225 21 C -0.173 4.173 22 C 0.152 3.848 23 F -0.109 7.109 24 C 0.112 3.888 25 C -0.139 4.139 26 C 0.173 3.827 27 H 0.043 0.957 28 H 0.251 0.749 29 H 0.083 0.917 30 H 0.019 0.981 31 H 0.055 0.945 32 H 0.061 0.939 33 H 0.080 0.920 34 H 0.062 0.938 35 H 0.179 0.821 36 H 0.157 0.843 37 H 0.090 0.910 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.755 -19.871 1.196 20.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.205 4.205 3 Si 0.742 3.258 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.350 4.350 8 H 0.096 0.904 9 N -0.324 5.324 10 C 0.042 3.958 11 C -0.175 4.175 12 C -0.126 4.126 13 H 0.087 0.913 14 C -0.005 4.005 15 N -0.324 5.324 16 C 0.377 3.623 17 O -0.405 6.405 18 C -0.428 4.428 19 S 0.537 5.463 20 C -0.363 4.363 21 C -0.205 4.205 22 C 0.117 3.883 23 F -0.088 7.088 24 C -0.010 4.010 25 C -0.179 4.179 26 C 0.065 3.935 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.101 0.899 30 H 0.037 0.963 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.098 0.902 34 H 0.080 0.920 35 H 0.196 0.804 36 H 0.174 0.826 37 H 0.108 0.892 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -3.037 -19.872 0.118 20.103 hybrid contribution -0.126 1.210 1.662 2.060 sum -3.163 -18.662 1.780 19.012 Atomic orbital electron populations 1.69929 1.04878 1.24745 1.57458 1.24778 0.95701 0.97652 1.02373 0.86048 0.78723 0.83814 0.77212 1.20508 1.21812 1.21797 1.19067 0.90510 0.82283 1.43173 0.90409 1.44712 1.01499 0.99381 1.86825 1.21387 0.84522 0.90030 0.99869 1.22701 0.95283 0.99345 1.00173 1.20682 0.98131 0.93292 1.00515 0.91349 1.20815 0.92486 0.97951 0.89279 1.47626 1.22436 1.42176 1.20131 1.16686 0.84559 0.79187 0.81856 1.90843 1.43990 1.65439 1.40185 1.24590 1.04863 1.14624 0.98763 1.83283 1.13298 1.41730 1.07990 1.25209 1.05977 1.06894 0.98192 1.19803 0.98888 1.02523 0.99310 1.16820 0.94152 0.96325 0.80957 1.91563 1.91371 1.83229 1.42609 1.21765 0.85553 0.90914 1.02730 1.22515 1.01433 0.93219 1.00748 1.20557 0.92309 0.86064 0.94524 0.93935 0.93855 0.89856 0.96330 0.92611 0.91985 0.90225 0.91961 0.80366 0.82576 0.89209 0.91289 0.91328 0.90969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.62 10.22 55.49 0.57 -26.06 16 2 C -0.01 -0.26 5.48 -17.43 -0.10 -0.35 16 3 Si 0.91 21.94 29.55 -169.99 -5.02 16.91 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 7 C -0.22 -5.98 9.83 -15.06 -0.15 -6.13 16 8 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 9 N -0.60 -14.62 3.04 -163.70 -0.50 -15.12 16 10 C 0.17 3.92 5.54 -3.07 -0.02 3.91 16 11 C -0.14 -2.44 6.37 -25.76 -0.16 -2.61 16 12 C -0.11 -1.71 2.45 -92.88 -0.23 -1.94 16 13 H 0.07 1.03 8.04 -51.93 -0.42 0.61 16 14 C 0.12 1.58 4.91 -6.34 -0.03 1.54 16 15 N -0.59 -9.02 3.00 -178.02 -0.53 -9.55 16 16 C 0.59 9.70 7.46 -13.03 -0.10 9.60 16 17 O -0.53 -10.34 16.37 5.16 0.08 -10.25 16 18 C -0.31 -4.14 5.40 -36.82 -0.20 -4.34 16 19 S 0.27 2.38 19.90 -107.50 -2.14 0.24 16 20 C -0.23 -1.68 10.91 29.15 0.32 -1.36 16 21 C -0.17 -1.64 10.15 -41.35 -0.42 -2.06 16 22 C 0.15 2.01 7.47 -40.25 -0.30 1.71 16 23 F -0.11 -1.70 17.13 2.25 0.04 -1.67 16 24 C 0.11 1.74 6.42 -3.88 -0.02 1.72 16 25 C -0.14 -2.54 5.19 -26.46 -0.14 -2.68 16 26 C 0.17 3.34 3.43 -67.44 -0.23 3.11 16 27 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 29 H 0.08 2.24 6.41 -51.93 -0.33 1.91 16 30 H 0.02 0.47 8.12 -51.93 -0.42 0.05 16 31 H 0.06 1.03 8.14 -51.92 -0.42 0.60 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.08 0.97 4.46 -39.09 -0.17 0.79 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.18 0.74 8.06 -52.49 -0.42 0.31 16 36 H 0.16 1.12 8.06 -52.49 -0.42 0.70 16 37 H 0.09 1.45 7.00 -51.93 -0.36 1.09 16 38 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 40 H 0.07 1.34 8.11 -51.93 -0.42 0.92 16 LS Contribution 334.82 15.07 5.05 5.05 Total: -1.00 -32.48 334.82 -9.29 -41.77 By element: Atomic # 1 Polarization: 3.62 SS G_CDS: -5.06 Total: -1.44 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: -1.78 Total: 0.11 kcal Atomic # 7 Polarization: -50.26 SS G_CDS: -0.46 Total: -50.73 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: 0.08 Total: -10.25 kcal Atomic # 9 Polarization: -1.70 SS G_CDS: 0.04 Total: -1.67 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.91 kcal Atomic # 16 Polarization: 2.38 SS G_CDS: -2.14 Total: 0.24 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.48 -9.29 -41.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036705221.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.094 kcal (2) G-P(sol) polarization free energy of solvation -32.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds