Wall clock time and date at job start Tue Mar 31 2020 13:38:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 119.99872 * 2 1 4 4 H 1.48498 * 109.47102 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47155 * 299.99783 * 3 2 1 6 6 H 1.48500 * 109.46944 * 59.99660 * 3 2 1 7 7 C 1.38807 * 119.99902 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00282 * 180.02562 * 7 2 1 9 9 N 1.36945 * 120.00170 * 0.02562 * 7 2 1 10 10 C 1.46864 * 125.33498 * 0.02568 * 9 7 2 11 11 C 1.54471 * 106.65286 * 195.40451 * 10 9 7 12 12 C 1.53383 * 102.54362 * 332.26206 * 11 10 9 13 13 H 1.09000 * 105.68564 * 278.46117 * 12 11 10 14 14 C 1.49264 * 114.29513 * 161.96753 * 12 11 10 15 15 N 1.45655 * 114.67651 * 259.00398 * 14 12 11 16 16 C 1.34775 * 120.30047 * 143.50351 * 15 14 12 17 17 O 1.21734 * 120.00168 * 175.97015 * 16 15 14 18 18 C 1.46289 * 120.00234 * 355.97453 * 16 15 14 19 19 S 1.75831 * 125.46554 * 42.93720 * 18 16 15 20 20 C 1.70595 * 91.60827 * 179.97438 * 19 18 16 21 21 C 1.33735 * 111.04231 * 0.02562 * 20 19 18 22 22 C 1.36928 * 125.46795 * 222.63026 * 18 16 15 23 23 F 1.35095 * 123.39995 * 0.02562 * 22 18 16 24 24 C 1.46816 * 119.39402 * 323.53174 * 15 14 12 25 25 C 1.52973 * 107.39314 * 55.01254 * 24 15 14 26 26 C 1.48009 * 125.33497 * 179.71424 * 9 7 2 27 27 H 1.09003 * 110.22074 * 303.20322 * 26 9 7 28 28 H 0.96994 * 120.00268 * 0.02562 * 1 2 3 29 29 H 1.09000 * 110.02163 * 314.70175 * 10 9 7 30 30 H 1.09002 * 110.02298 * 76.10754 * 10 9 7 31 31 H 1.09012 * 110.79351 * 90.52246 * 11 10 9 32 32 H 1.08997 * 110.79743 * 213.99663 * 11 10 9 33 33 H 1.08995 * 108.44662 * 20.35594 * 14 12 11 34 34 H 1.09002 * 108.44190 * 137.66412 * 14 12 11 35 35 H 1.07998 * 124.47981 * 179.97438 * 20 19 18 36 36 H 1.07995 * 122.45597 * 180.02562 * 21 20 19 37 37 H 1.08998 * 109.87532 * 174.48218 * 24 15 14 38 38 H 1.08996 * 109.87716 * 295.47194 * 24 15 14 39 39 H 1.09004 * 109.38043 * 58.68088 * 25 24 15 40 40 H 1.08999 * 109.38430 * 178.46481 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8913 2.3964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 -0.1368 -2.5247 -0.0005 11 6 -0.4452 -3.9862 0.3930 12 6 0.8041 -4.7324 -0.0919 13 1 0.6539 -4.8964 -1.1589 14 6 0.9878 -6.0828 0.5170 15 7 1.9648 -6.1356 1.5960 16 6 1.7601 -6.9370 2.6601 17 8 2.6133 -7.0327 3.5231 18 6 0.5127 -7.6920 2.7780 19 16 -0.2846 -8.5556 1.4702 20 6 -1.5405 -9.0637 2.5070 21 6 -1.3539 -8.6034 3.7487 22 6 -0.2183 -7.8445 3.9257 23 9 0.1363 -7.3017 5.1109 24 6 3.1742 -5.3072 1.5142 25 6 2.7240 -3.8594 1.3111 26 6 1.9432 -3.7331 -0.0049 27 1 2.6060 -3.8398 -0.8637 28 1 -0.4850 0.8400 -0.0004 29 1 -0.5759 -1.8418 0.7267 30 1 -0.5305 -2.3150 -0.9951 31 1 -0.5574 -4.0807 1.4732 32 1 -1.3354 -4.3462 -0.1226 33 1 0.0267 -6.4197 0.9052 34 1 1.3007 -6.7742 -0.2655 35 1 -2.3762 -9.6754 2.2009 36 1 -2.0405 -8.8157 4.5548 37 1 3.7444 -5.3916 2.4393 38 1 3.7865 -5.6276 0.6713 39 1 2.0865 -3.5589 2.1426 40 1 3.5989 -3.2105 1.2731 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036705221.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:38 Heat of formation + Delta-G solvation = -24.910287 kcal Electronic energy + Delta-G solvation = -25905.549939 eV Core-core repulsion = 22147.816058 eV Total energy + Delta-G solvation = -3757.733881 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.105 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.03039 -41.57478 -39.81385 -38.26863 -36.84427 -34.50925 -33.64000 -31.63779 -30.62614 -29.73283 -27.05247 -26.01543 -25.09829 -24.08773 -22.23295 -22.05429 -20.81865 -19.92028 -19.13116 -18.85987 -17.90970 -17.68825 -17.03179 -16.79069 -16.49992 -16.43303 -16.03482 -15.62796 -15.54105 -14.97647 -14.76793 -14.44161 -14.35283 -14.16387 -13.99363 -13.70402 -13.32459 -13.22725 -13.05651 -12.86268 -12.69765 -12.66754 -12.37964 -12.11220 -11.97379 -11.67893 -11.62777 -11.47466 -11.19372 -11.01571 -10.70178 -10.02636 -9.73517 -9.36238 -8.85455 -7.79439 -5.17622 -0.62586 0.20323 0.77686 1.18180 1.44942 1.46020 1.55507 1.60334 2.01372 2.49110 3.27643 3.32504 3.36370 3.50539 3.69036 3.85819 3.96196 3.98213 4.15950 4.23541 4.38241 4.40808 4.46650 4.58053 4.67452 4.70702 4.73425 4.81154 4.86858 4.92373 5.07179 5.13415 5.21373 5.29850 5.46315 5.48864 5.55405 5.70696 5.83727 6.21302 6.27916 6.90488 7.13905 7.81777 8.43599 9.26687 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.020508 B = 0.003646 C = 0.003530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.008718 B = 7677.700651 C = 7930.638455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.068 4.068 3 Si 0.972 3.028 4 H -0.266 1.266 5 H -0.292 1.292 6 H -0.297 1.297 7 C -0.227 4.227 8 H 0.081 0.919 9 N -0.620 5.620 10 C 0.170 3.830 11 C -0.122 4.122 12 C -0.098 4.098 13 H 0.091 0.909 14 C 0.117 3.883 15 N -0.593 5.593 16 C 0.586 3.414 17 O -0.575 6.575 18 C -0.355 4.355 19 S 0.337 5.663 20 C -0.197 4.197 21 C -0.188 4.188 22 C 0.129 3.871 23 F -0.135 7.135 24 C 0.121 3.879 25 C -0.126 4.126 26 C 0.166 3.834 27 H 0.053 0.947 28 H 0.244 0.756 29 H 0.039 0.961 30 H -0.006 1.006 31 H 0.046 0.954 32 H 0.097 0.903 33 H 0.095 0.905 34 H 0.104 0.896 35 H 0.223 0.777 36 H 0.177 0.823 37 H 0.077 0.923 38 H 0.099 0.901 39 H 0.031 0.969 40 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.621 -22.997 -0.595 23.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.260 4.260 3 Si 0.801 3.199 4 H -0.191 1.191 5 H -0.219 1.219 6 H -0.225 1.225 7 C -0.356 4.356 8 H 0.099 0.901 9 N -0.345 5.345 10 C 0.045 3.955 11 C -0.160 4.160 12 C -0.117 4.117 13 H 0.110 0.890 14 C -0.006 4.006 15 N -0.324 5.324 16 C 0.375 3.625 17 O -0.456 6.456 18 C -0.476 4.476 19 S 0.603 5.397 20 C -0.335 4.335 21 C -0.219 4.219 22 C 0.093 3.907 23 F -0.114 7.114 24 C -0.001 4.001 25 C -0.167 4.167 26 C 0.060 3.940 27 H 0.071 0.929 28 H 0.053 0.947 29 H 0.058 0.942 30 H 0.012 0.988 31 H 0.064 0.936 32 H 0.116 0.884 33 H 0.113 0.887 34 H 0.122 0.878 35 H 0.240 0.760 36 H 0.194 0.806 37 H 0.096 0.904 38 H 0.117 0.883 39 H 0.050 0.950 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.892 -23.031 -1.698 23.419 hybrid contribution 0.109 2.133 2.189 3.058 sum -3.783 -20.898 0.491 21.243 Atomic orbital electron populations 1.70168 1.06143 1.24745 1.59050 1.25551 0.96534 1.00734 1.03229 0.85094 0.78280 0.79999 0.76523 1.19061 1.21911 1.22474 1.19412 0.90961 0.83638 1.41609 0.90101 1.45008 1.02207 1.00716 1.86555 1.21146 0.84116 0.93049 0.97224 1.22555 0.97801 0.95644 0.99987 1.20649 0.95309 0.93528 1.02235 0.89027 1.21007 0.93153 0.96762 0.89651 1.47701 1.22546 1.41613 1.20550 1.17130 0.85141 0.79164 0.81085 1.90801 1.45950 1.67164 1.41681 1.24575 1.04871 1.16798 1.01365 1.82942 1.11888 1.39391 1.05447 1.25772 1.05973 1.04859 0.96861 1.19951 0.98182 1.02677 1.01050 1.17482 0.95783 0.97239 0.80152 1.91486 1.91834 1.83889 1.44213 1.21630 0.86141 0.89000 1.03376 1.22297 1.00171 0.95247 0.98948 1.20842 0.93657 0.84664 0.94842 0.92943 0.94657 0.94239 0.98824 0.93558 0.88440 0.88686 0.87834 0.76027 0.80610 0.90408 0.88280 0.94986 0.91942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.18 10.22 21.65 0.22 -56.96 16 2 C -0.07 -3.87 5.48 84.86 0.47 -3.41 16 3 Si 0.97 46.20 29.55 68.60 2.03 48.23 16 4 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 5 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 6 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 7 C -0.23 -12.50 9.83 84.03 0.83 -11.68 16 8 H 0.08 4.28 7.83 -2.91 -0.02 4.26 16 9 N -0.62 -30.78 3.04 -671.84 -2.04 -32.82 16 10 C 0.17 8.19 5.54 86.81 0.48 8.67 16 11 C -0.12 -4.18 6.37 31.22 0.20 -3.98 16 12 C -0.10 -2.87 2.45 -12.26 -0.03 -2.90 16 13 H 0.09 2.35 8.04 -2.39 -0.02 2.33 16 14 C 0.12 2.67 4.91 85.35 0.42 3.09 16 15 N -0.59 -17.13 3.00 -835.34 -2.50 -19.64 16 16 C 0.59 19.00 7.46 86.34 0.64 19.65 16 17 O -0.57 -23.26 16.37 -4.46 -0.07 -23.33 16 18 C -0.36 -9.03 5.40 24.06 0.13 -8.90 16 19 S 0.34 4.39 19.90 -56.49 -1.12 3.26 16 20 C -0.20 -1.94 10.91 66.80 0.73 -1.21 16 21 C -0.19 -3.01 10.15 21.12 0.21 -2.79 16 22 C 0.13 3.32 7.47 21.84 0.16 3.48 16 23 F -0.14 -4.40 17.13 44.97 0.77 -3.63 16 24 C 0.12 3.65 6.42 86.31 0.55 4.21 16 25 C -0.13 -4.68 5.19 30.77 0.16 -4.52 16 26 C 0.17 6.26 3.43 44.48 0.15 6.42 16 27 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 28 H 0.24 14.33 8.31 -92.71 -0.77 13.55 16 29 H 0.04 2.24 6.41 -2.39 -0.02 2.22 16 30 H -0.01 -0.33 8.12 -2.39 -0.02 -0.35 16 31 H 0.05 1.68 8.14 -2.38 -0.02 1.66 16 32 H 0.10 2.68 8.14 -2.39 -0.02 2.66 16 33 H 0.10 1.91 4.46 -10.56 -0.05 1.87 16 34 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.22 0.26 8.06 -2.91 -0.02 0.24 16 36 H 0.18 2.00 8.06 -2.91 -0.02 1.98 16 37 H 0.08 2.57 7.00 -2.39 -0.02 2.55 16 38 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 39 H 0.03 1.39 8.14 -2.38 -0.02 1.37 16 40 H 0.06 2.38 8.11 -2.39 -0.02 2.36 16 Total: -1.00 -77.48 334.82 3.41 -74.07 By element: Atomic # 1 Polarization: 3.66 SS G_CDS: 1.03 Total: 4.69 kcal Atomic # 6 Polarization: 1.02 SS G_CDS: 5.11 Total: 6.13 kcal Atomic # 7 Polarization: -105.09 SS G_CDS: -4.33 Total: -109.42 kcal Atomic # 8 Polarization: -23.26 SS G_CDS: -0.07 Total: -23.33 kcal Atomic # 9 Polarization: -4.40 SS G_CDS: 0.77 Total: -3.63 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 2.03 Total: 48.23 kcal Atomic # 16 Polarization: 4.39 SS G_CDS: -1.12 Total: 3.26 kcal Total: -77.48 3.41 -74.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036705221.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.164 kcal (2) G-P(sol) polarization free energy of solvation -77.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds