Wall clock time and date at job start Tue Mar 31 2020 13:35:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86795 * 120.00653 * 2 1 4 4 H 1.48504 * 109.47081 * 274.99045 * 3 2 1 5 5 H 1.48504 * 109.46894 * 34.98600 * 3 2 1 6 6 H 1.48493 * 109.47683 * 154.98261 * 3 2 1 7 7 C 1.38815 * 119.99668 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99833 * 185.06986 * 7 2 1 9 9 N 1.36936 * 120.00304 * 5.06492 * 7 2 1 10 10 C 1.47585 * 134.48939 * 353.49205 * 9 7 2 11 11 C 1.53944 * 86.11620 * 204.63856 * 10 9 7 12 12 C 1.47581 * 134.49589 * 173.48678 * 9 7 2 13 13 H 1.08996 * 113.87053 * 269.67799 * 12 9 7 14 14 C 1.52998 * 113.76787 * 41.06576 * 12 9 7 15 15 N 1.46501 * 109.46888 * 281.49323 * 14 12 9 16 16 C 1.34774 * 119.99957 * 179.97438 * 15 14 12 17 17 O 1.21606 * 120.00103 * 0.02562 * 16 15 14 18 18 C 1.47387 * 119.99894 * 180.02562 * 16 15 14 19 19 C 1.41386 * 126.42865 * 90.15557 * 18 16 15 20 20 Cl 1.73606 * 126.00179 * 0.02781 * 19 18 16 21 21 N 1.30524 * 107.99551 * 180.28452 * 19 18 16 22 22 N 1.39932 * 108.89196 * 359.74064 * 21 19 18 23 23 H 0.97008 * 125.74244 * 179.97438 * 22 21 19 24 24 C 1.34233 * 108.52543 * 0.02562 * 22 21 19 25 25 C 1.50696 * 126.28317 * 180.02562 * 24 22 21 26 26 C 1.53002 * 117.50137 * 8.76188 * 25 24 22 27 27 C 1.53006 * 117.49825 * 300.10325 * 25 24 22 28 28 H 0.97003 * 119.99490 * 359.97438 * 1 2 3 29 29 H 1.09008 * 113.76448 * 90.33614 * 10 9 7 30 30 H 1.08994 * 113.87437 * 318.95532 * 10 9 7 31 31 H 1.09010 * 113.73914 * 222.05475 * 11 10 9 32 32 H 1.08990 * 113.83932 * 90.75186 * 11 10 9 33 33 H 1.08995 * 109.47457 * 161.49491 * 14 12 9 34 34 H 1.09001 * 109.47226 * 41.48975 * 14 12 9 35 35 H 0.96998 * 120.00205 * 359.97438 * 15 14 12 36 36 H 1.09002 * 115.55421 * 154.44026 * 25 24 22 37 37 H 1.08999 * 117.49638 * 0.02562 * 26 25 24 38 38 H 1.09003 * 117.49854 * 145.02440 * 26 25 24 39 39 H 1.09000 * 117.49766 * 214.98266 * 27 25 24 40 40 H 1.09000 * 117.49455 * 359.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.3924 2.1072 -1.3948 5 1 1.5045 2.6199 0.8028 6 1 3.5965 1.4119 0.5920 7 6 2.0102 -1.2022 -0.0005 8 1 3.0871 -1.2041 0.0821 9 7 1.3295 -2.3857 -0.1058 10 6 -0.0979 -2.7609 -0.1123 11 6 0.3707 -4.1419 0.3807 12 6 1.7285 -3.7984 -0.2582 13 1 1.8203 -4.1213 -1.2952 14 6 2.9316 -4.1954 0.5995 15 7 4.1629 -3.7213 -0.0373 16 6 5.3560 -3.9575 0.5435 17 8 5.4104 -4.5646 1.5958 18 6 6.5947 -3.4801 -0.0969 19 6 7.2186 -2.2285 0.1108 20 17 6.6597 -0.9732 1.1719 21 7 8.2856 -2.1804 -0.6394 22 7 8.3964 -3.3825 -1.3471 23 1 9.1001 -3.6070 -1.9760 24 6 7.3647 -4.1724 -1.0102 25 6 7.0940 -5.5585 -1.5360 26 6 8.1808 -6.2151 -2.3895 27 6 6.8910 -5.7146 -3.0445 28 1 -0.4849 0.8401 0.0004 29 1 -0.5432 -2.7773 -1.1072 30 1 -0.7005 -2.2161 0.6144 31 1 -0.1415 -4.9761 -0.0990 32 1 0.4070 -4.2331 1.4662 33 1 2.9670 -5.2805 0.6959 34 1 2.8374 -3.7457 1.5879 35 1 4.1196 -3.2374 -0.8768 36 1 6.5102 -6.2044 -0.8802 37 1 9.0919 -5.6447 -2.5704 38 1 8.3119 -7.2931 -2.2954 39 1 6.1740 -6.4635 -3.3810 40 1 6.9529 -4.8147 -3.6564 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038342333.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:35:22 Heat of formation + Delta-G solvation = 113.715889 kcal Electronic energy + Delta-G solvation = -25272.628751 eV Core-core repulsion = 21538.782407 eV Total energy + Delta-G solvation = -3733.846343 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.109 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.75795 -39.03179 -37.78117 -37.56517 -36.66826 -33.96051 -32.15808 -31.60579 -30.76616 -27.97702 -27.52919 -24.38638 -23.32578 -22.97307 -22.76165 -21.69664 -21.35759 -19.78126 -19.04388 -18.09760 -16.79467 -16.25784 -16.17719 -15.82714 -15.31621 -15.17588 -14.99795 -14.48601 -14.09719 -14.01994 -13.60190 -13.08887 -12.99472 -12.57605 -12.28537 -12.06686 -11.80534 -11.69944 -11.41848 -11.25691 -11.10467 -11.06360 -10.98281 -10.71739 -10.70657 -10.50666 -10.06207 -9.74693 -9.68661 -9.50414 -9.32978 -8.82468 -8.76247 -8.54226 -6.84622 -5.74222 -3.05211 1.28189 1.43937 2.07657 2.67513 2.84371 3.34672 3.41382 3.48376 3.49224 3.67054 3.96239 4.25178 4.42038 4.47619 4.67407 4.76010 5.07511 5.10496 5.21082 5.33088 5.38878 5.43521 5.54495 5.63141 5.64018 5.70562 5.82398 5.94889 6.10738 6.33928 6.42234 6.64425 6.74310 6.74556 6.91345 7.10506 7.29264 7.42397 7.63900 7.92187 8.02046 8.56836 9.08822 9.75283 10.63376 11.43204 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.011703 B = 0.004783 C = 0.003860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2391.933351 B = 5852.579778 C = 7252.307398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.005 4.005 3 Si 0.898 3.102 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.217 4.217 8 H 0.081 0.919 9 N -0.601 5.601 10 C 0.162 3.838 11 C -0.156 4.156 12 C 0.126 3.874 13 H 0.049 0.951 14 C 0.123 3.877 15 N -0.700 5.700 16 C 0.593 3.407 17 O -0.540 6.540 18 C -0.254 4.254 19 C 0.161 3.839 20 Cl 0.032 6.968 21 N -0.276 5.276 22 N -0.450 5.450 23 H 0.444 0.556 24 C 0.170 3.830 25 C -0.105 4.105 26 C -0.171 4.171 27 C -0.157 4.157 28 H 0.252 0.748 29 H 0.027 0.973 30 H 0.069 0.931 31 H 0.053 0.947 32 H 0.076 0.924 33 H 0.061 0.939 34 H 0.073 0.927 35 H 0.404 0.596 36 H 0.138 0.862 37 H 0.093 0.907 38 H 0.110 0.890 39 H 0.111 0.889 40 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.096 -12.819 -6.198 20.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.201 4.201 3 Si 0.729 3.271 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.344 4.344 8 H 0.099 0.901 9 N -0.327 5.327 10 C 0.036 3.964 11 C -0.195 4.195 12 C 0.018 3.982 13 H 0.066 0.934 14 C -0.002 4.002 15 N -0.349 5.349 16 C 0.377 3.623 17 O -0.417 6.417 18 C -0.270 4.270 19 C -0.031 4.031 20 Cl 0.060 6.940 21 N -0.101 5.101 22 N -0.159 5.159 23 H 0.290 0.710 24 C 0.038 3.962 25 C -0.125 4.125 26 C -0.208 4.208 27 C -0.194 4.194 28 H 0.062 0.938 29 H 0.045 0.955 30 H 0.087 0.913 31 H 0.071 0.929 32 H 0.095 0.905 33 H 0.079 0.921 34 H 0.092 0.908 35 H 0.238 0.762 36 H 0.155 0.845 37 H 0.111 0.889 38 H 0.129 0.871 39 H 0.130 0.870 40 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 15.053 -12.036 -5.624 20.077 hybrid contribution 0.170 0.987 -0.517 1.127 sum 15.223 -11.050 -6.141 19.788 Atomic orbital electron populations 1.69836 1.04983 1.25177 1.56543 1.24755 0.95544 0.97296 1.02541 0.86288 0.79131 0.84154 0.77538 1.21699 1.21769 1.20308 1.18985 0.90783 0.81882 1.42795 0.90110 1.46061 1.02197 0.99980 1.84493 1.22128 0.87911 0.88539 0.97780 1.23790 0.96280 0.98915 1.00527 1.22494 0.92154 0.87616 0.95906 0.93369 1.21807 0.82507 0.97883 0.97975 1.45942 1.05506 1.57017 1.26455 1.17050 0.82236 0.79116 0.83942 1.90766 1.87210 1.41533 1.22200 1.19797 1.02596 0.95773 1.08796 1.22663 0.93768 0.91029 0.95688 1.98469 1.86526 1.48726 1.60303 1.77180 1.19578 1.02134 1.11206 1.45750 1.22438 1.11258 1.36451 0.70975 1.20317 0.88424 0.92632 0.94784 1.20726 1.05480 0.91036 0.95244 1.23063 0.92927 1.01903 1.02941 1.23150 0.99832 1.03882 0.92586 0.93777 0.95488 0.91272 0.92870 0.90502 0.92058 0.90818 0.76158 0.84450 0.88885 0.87124 0.87042 0.88122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.97 11.51 55.49 0.64 -26.33 16 2 C 0.00 -0.13 5.50 -17.43 -0.10 -0.23 16 3 Si 0.90 22.32 29.56 -169.99 -5.02 17.30 16 4 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 5 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.22 -5.81 10.50 -15.06 -0.16 -5.97 16 8 H 0.08 2.12 7.79 -52.48 -0.41 1.71 16 9 N -0.60 -14.47 3.57 -170.74 -0.61 -15.08 16 10 C 0.16 3.66 7.42 -2.97 -0.02 3.64 16 11 C -0.16 -2.78 7.86 -25.80 -0.20 -2.98 16 12 C 0.13 2.36 4.33 -66.86 -0.29 2.07 16 13 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 14 C 0.12 2.17 5.54 -4.04 -0.02 2.15 16 15 N -0.70 -11.94 5.51 -61.40 -0.34 -12.28 16 16 C 0.59 10.42 7.31 -12.54 -0.09 10.33 16 17 O -0.54 -11.07 17.11 5.27 0.09 -10.98 16 18 C -0.25 -3.95 5.88 -105.04 -0.62 -4.56 16 19 C 0.16 2.61 7.89 -16.91 -0.13 2.48 16 20 Cl 0.03 0.55 29.19 -51.86 -1.51 -0.97 16 21 N -0.28 -3.98 12.64 33.18 0.42 -3.56 16 22 N -0.45 -4.79 7.17 33.86 0.24 -4.55 16 23 H 0.44 2.97 7.95 -182.72 -1.45 1.52 16 24 C 0.17 2.00 6.80 -81.60 -0.55 1.45 16 25 C -0.10 -0.91 6.02 -91.77 -0.55 -1.46 16 26 C -0.17 -0.94 10.14 -26.69 -0.27 -1.21 16 27 C -0.16 -1.00 10.24 -26.69 -0.27 -1.27 16 28 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 29 H 0.03 0.62 8.14 -51.92 -0.42 0.20 16 30 H 0.07 1.74 7.36 -51.93 -0.38 1.36 16 31 H 0.05 0.79 8.14 -51.92 -0.42 0.37 16 32 H 0.08 1.35 8.10 -51.93 -0.42 0.93 16 33 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.07 1.51 8.14 -51.93 -0.42 1.08 16 35 H 0.40 6.75 8.46 -40.82 -0.35 6.41 16 36 H 0.14 1.29 8.14 -51.93 -0.42 0.87 16 37 H 0.09 0.39 7.16 -51.93 -0.37 0.02 16 38 H 0.11 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.11 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 361.42 15.07 5.45 5.45 Total: -1.00 -33.56 361.42 -10.26 -43.81 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -6.32 Total: 2.77 kcal Atomic # 6 Polarization: 7.70 SS G_CDS: -3.29 Total: 4.41 kcal Atomic # 7 Polarization: -62.15 SS G_CDS: 0.35 Total: -61.80 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: 0.09 Total: -10.98 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Atomic # 17 Polarization: 0.55 SS G_CDS: -1.51 Total: -0.97 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.56 -10.26 -43.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038342333.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.528 kcal (2) G-P(sol) polarization free energy of solvation -33.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.812 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds