Wall clock time and date at job start Tue Mar 31 2020 13:35:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86795 * 120.00653 * 2 1 4 4 H 1.48504 * 109.47081 * 274.99045 * 3 2 1 5 5 H 1.48504 * 109.46894 * 34.98600 * 3 2 1 6 6 H 1.48493 * 109.47683 * 154.98261 * 3 2 1 7 7 C 1.38815 * 119.99668 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99833 * 185.06986 * 7 2 1 9 9 N 1.36936 * 120.00304 * 5.06492 * 7 2 1 10 10 C 1.47585 * 134.48939 * 353.49205 * 9 7 2 11 11 C 1.53944 * 86.11620 * 204.63856 * 10 9 7 12 12 C 1.47581 * 134.49589 * 173.48678 * 9 7 2 13 13 H 1.08996 * 113.87053 * 269.67799 * 12 9 7 14 14 C 1.52998 * 113.76787 * 41.06576 * 12 9 7 15 15 N 1.46501 * 109.46888 * 281.49323 * 14 12 9 16 16 C 1.34774 * 119.99957 * 179.97438 * 15 14 12 17 17 O 1.21606 * 120.00103 * 0.02562 * 16 15 14 18 18 C 1.47387 * 119.99894 * 180.02562 * 16 15 14 19 19 C 1.41386 * 126.42865 * 90.15557 * 18 16 15 20 20 Cl 1.73606 * 126.00179 * 0.02781 * 19 18 16 21 21 N 1.30524 * 107.99551 * 180.28452 * 19 18 16 22 22 N 1.39932 * 108.89196 * 359.74064 * 21 19 18 23 23 H 0.97008 * 125.74244 * 179.97438 * 22 21 19 24 24 C 1.34233 * 108.52543 * 0.02562 * 22 21 19 25 25 C 1.50696 * 126.28317 * 180.02562 * 24 22 21 26 26 C 1.53002 * 117.50137 * 8.76188 * 25 24 22 27 27 C 1.53006 * 117.49825 * 300.10325 * 25 24 22 28 28 H 0.97003 * 119.99490 * 359.97438 * 1 2 3 29 29 H 1.09008 * 113.76448 * 90.33614 * 10 9 7 30 30 H 1.08994 * 113.87437 * 318.95532 * 10 9 7 31 31 H 1.09010 * 113.73914 * 222.05475 * 11 10 9 32 32 H 1.08990 * 113.83932 * 90.75186 * 11 10 9 33 33 H 1.08995 * 109.47457 * 161.49491 * 14 12 9 34 34 H 1.09001 * 109.47226 * 41.48975 * 14 12 9 35 35 H 0.96998 * 120.00205 * 359.97438 * 15 14 12 36 36 H 1.09002 * 115.55421 * 154.44026 * 25 24 22 37 37 H 1.08999 * 117.49638 * 0.02562 * 26 25 24 38 38 H 1.09003 * 117.49854 * 145.02440 * 26 25 24 39 39 H 1.09000 * 117.49766 * 214.98266 * 27 25 24 40 40 H 1.09000 * 117.49455 * 359.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.3924 2.1072 -1.3948 5 1 1.5045 2.6199 0.8028 6 1 3.5965 1.4119 0.5920 7 6 2.0102 -1.2022 -0.0005 8 1 3.0871 -1.2041 0.0821 9 7 1.3295 -2.3857 -0.1058 10 6 -0.0979 -2.7609 -0.1123 11 6 0.3707 -4.1419 0.3807 12 6 1.7285 -3.7984 -0.2582 13 1 1.8203 -4.1213 -1.2952 14 6 2.9316 -4.1954 0.5995 15 7 4.1629 -3.7213 -0.0373 16 6 5.3560 -3.9575 0.5435 17 8 5.4104 -4.5646 1.5958 18 6 6.5947 -3.4801 -0.0969 19 6 7.2186 -2.2285 0.1108 20 17 6.6597 -0.9732 1.1719 21 7 8.2856 -2.1804 -0.6394 22 7 8.3964 -3.3825 -1.3471 23 1 9.1001 -3.6070 -1.9760 24 6 7.3647 -4.1724 -1.0102 25 6 7.0940 -5.5585 -1.5360 26 6 8.1808 -6.2151 -2.3895 27 6 6.8910 -5.7146 -3.0445 28 1 -0.4849 0.8401 0.0004 29 1 -0.5432 -2.7773 -1.1072 30 1 -0.7005 -2.2161 0.6144 31 1 -0.1415 -4.9761 -0.0990 32 1 0.4070 -4.2331 1.4662 33 1 2.9670 -5.2805 0.6959 34 1 2.8374 -3.7457 1.5879 35 1 4.1196 -3.2374 -0.8768 36 1 6.5102 -6.2044 -0.8802 37 1 9.0919 -5.6447 -2.5704 38 1 8.3119 -7.2931 -2.2954 39 1 6.1740 -6.4635 -3.3810 40 1 6.9529 -4.8147 -3.6564 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038342333.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:35:21 Heat of formation + Delta-G solvation = 90.450004 kcal Electronic energy + Delta-G solvation = -25273.637635 eV Core-core repulsion = 21538.782407 eV Total energy + Delta-G solvation = -3734.855228 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.109 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.79841 -40.48393 -39.40266 -38.30305 -37.79091 -35.44825 -34.17341 -32.68321 -31.83868 -29.85184 -29.05332 -25.35740 -25.24191 -24.12385 -23.39486 -22.96921 -22.42459 -21.15902 -20.58821 -19.19271 -18.42594 -17.54000 -17.25528 -17.07353 -16.83202 -16.40053 -16.16309 -15.91006 -15.58326 -15.46426 -14.99270 -14.54146 -14.49754 -13.63293 -13.45994 -13.41042 -13.22407 -12.93339 -12.75818 -12.64124 -12.56340 -12.46638 -12.27318 -12.13639 -11.93773 -11.83474 -11.50994 -11.46682 -11.38237 -10.93169 -10.80106 -10.55601 -10.00245 -9.87496 -8.82161 -7.85686 -5.14405 0.29149 0.31752 0.90277 1.41901 1.43869 1.47929 1.51256 1.73804 2.33951 2.49888 2.81427 3.22917 3.34839 3.44343 3.62936 3.63449 3.91750 3.96292 4.03543 4.05964 4.20148 4.40359 4.43306 4.60755 4.70723 4.72696 4.78227 4.93475 4.95119 5.03627 5.11768 5.16691 5.17401 5.40068 5.47374 5.66567 5.80120 5.87337 6.01997 6.12783 6.54553 7.00415 7.20108 7.69571 8.64603 9.32065 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.011703 B = 0.004783 C = 0.003860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2391.933351 B = 5852.579778 C = 7252.307398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.064 4.064 3 Si 0.949 3.051 4 H -0.288 1.288 5 H -0.299 1.299 6 H -0.272 1.272 7 C -0.204 4.204 8 H 0.082 0.918 9 N -0.629 5.629 10 C 0.153 3.847 11 C -0.129 4.129 12 C 0.133 3.867 13 H 0.074 0.926 14 C 0.131 3.869 15 N -0.696 5.696 16 C 0.601 3.399 17 O -0.575 6.575 18 C -0.293 4.293 19 C 0.145 3.855 20 Cl 0.010 6.990 21 N -0.289 5.289 22 N -0.426 5.426 23 H 0.464 0.536 24 C 0.201 3.799 25 C -0.135 4.135 26 C -0.147 4.147 27 C -0.147 4.147 28 H 0.244 0.756 29 H 0.023 0.977 30 H 0.033 0.967 31 H 0.096 0.904 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.042 0.958 35 H 0.406 0.594 36 H 0.129 0.871 37 H 0.110 0.890 38 H 0.127 0.873 39 H 0.123 0.877 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.957 -15.379 -8.150 23.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.257 4.257 3 Si 0.779 3.221 4 H -0.215 1.215 5 H -0.226 1.226 6 H -0.197 1.197 7 C -0.333 4.333 8 H 0.099 0.901 9 N -0.355 5.355 10 C 0.027 3.973 11 C -0.168 4.168 12 C 0.027 3.973 13 H 0.091 0.909 14 C 0.007 3.993 15 N -0.345 5.345 16 C 0.385 3.615 17 O -0.455 6.455 18 C -0.308 4.308 19 C -0.047 4.047 20 Cl 0.037 6.963 21 N -0.114 5.114 22 N -0.137 5.137 23 H 0.314 0.686 24 C 0.067 3.933 25 C -0.155 4.155 26 C -0.184 4.184 27 C -0.185 4.185 28 H 0.053 0.947 29 H 0.040 0.960 30 H 0.052 0.948 31 H 0.114 0.886 32 H 0.097 0.903 33 H 0.106 0.894 34 H 0.060 0.940 35 H 0.241 0.759 36 H 0.147 0.853 37 H 0.129 0.871 38 H 0.145 0.855 39 H 0.141 0.859 40 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 16.964 -14.619 -7.610 23.651 hybrid contribution -0.335 1.627 0.020 1.661 sum 16.629 -12.992 -7.590 22.426 Atomic orbital electron populations 1.69990 1.06056 1.24956 1.59108 1.25376 0.96232 0.99950 1.04179 0.85470 0.78192 0.81149 0.77279 1.21521 1.22602 1.19691 1.19239 0.90979 0.83126 1.39941 0.90050 1.46407 1.03283 1.01283 1.84566 1.22109 0.87015 0.91296 0.96848 1.23571 0.95084 0.97278 1.00849 1.22683 0.93082 0.84244 0.97246 0.90916 1.21640 0.82484 0.99136 0.96075 1.45914 1.05369 1.56815 1.26386 1.17244 0.82794 0.78132 0.83280 1.90736 1.87759 1.43243 1.23730 1.19704 1.03041 0.96539 1.11521 1.22658 0.94720 0.90936 0.96338 1.98448 1.86881 1.49747 1.61184 1.77105 1.19035 1.03839 1.11468 1.45727 1.22422 1.09913 1.35677 0.68582 1.20643 0.86905 0.93240 0.92503 1.20795 1.08675 0.89343 0.96660 1.23269 0.92773 1.02945 0.99449 1.23267 1.00789 1.04298 0.90096 0.94680 0.95955 0.94831 0.88602 0.90321 0.89362 0.93968 0.75883 0.85319 0.87134 0.85460 0.85851 0.87913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.56 11.51 21.65 0.25 -57.31 16 2 C -0.06 -3.69 5.50 84.86 0.47 -3.22 16 3 Si 0.95 46.94 29.56 68.60 2.03 48.97 16 4 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 5 H -0.30 -15.02 7.11 99.48 0.71 -14.32 16 6 H -0.27 -13.00 7.11 99.48 0.71 -12.30 16 7 C -0.20 -11.03 10.50 84.03 0.88 -10.15 16 8 H 0.08 4.30 7.79 -2.91 -0.02 4.28 16 9 N -0.63 -30.13 3.57 -694.11 -2.48 -32.61 16 10 C 0.15 6.91 7.42 86.48 0.64 7.55 16 11 C -0.13 -4.29 7.86 31.25 0.25 -4.05 16 12 C 0.13 4.72 4.33 45.09 0.20 4.92 16 13 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 14 C 0.13 4.45 5.54 86.38 0.48 4.93 16 15 N -0.70 -23.12 5.51 -466.42 -2.57 -25.69 16 16 C 0.60 20.86 7.31 86.65 0.63 21.49 16 17 O -0.57 -23.62 17.11 -4.05 -0.07 -23.69 16 18 C -0.29 -8.87 5.88 -20.13 -0.12 -8.98 16 19 C 0.15 4.67 7.89 85.66 0.68 5.35 16 20 Cl 0.01 0.34 29.19 -2.72 -0.08 0.26 16 21 N -0.29 -7.98 12.64 -48.95 -0.62 -8.60 16 22 N -0.43 -8.00 7.17 -46.79 -0.34 -8.34 16 23 H 0.46 4.56 7.95 -213.42 -1.70 2.86 16 24 C 0.20 4.30 6.80 42.15 0.29 4.58 16 25 C -0.13 -1.94 6.02 -11.54 -0.07 -2.01 16 26 C -0.15 -0.97 10.14 30.62 0.31 -0.66 16 27 C -0.15 -1.30 10.24 30.62 0.31 -0.99 16 28 H 0.24 14.55 8.31 -92.71 -0.77 13.78 16 29 H 0.02 1.03 8.14 -2.38 -0.02 1.01 16 30 H 0.03 1.74 7.36 -2.39 -0.02 1.72 16 31 H 0.10 2.45 8.14 -2.38 -0.02 2.43 16 32 H 0.08 2.61 8.10 -2.39 -0.02 2.59 16 33 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 34 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.41 13.15 8.46 -92.71 -0.78 12.36 16 36 H 0.13 2.15 8.14 -2.39 -0.02 2.13 16 37 H 0.11 0.36 7.16 -2.39 -0.02 0.34 16 38 H 0.13 0.50 8.14 -2.39 -0.02 0.48 16 39 H 0.12 0.84 8.14 -2.39 -0.02 0.83 16 40 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 Total: -1.00 -75.59 361.42 -0.32 -75.91 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -1.38 Total: 12.35 kcal Atomic # 6 Polarization: 13.82 SS G_CDS: 4.94 Total: 18.76 kcal Atomic # 7 Polarization: -126.80 SS G_CDS: -5.75 Total: -132.55 kcal Atomic # 8 Polarization: -23.62 SS G_CDS: -0.07 Total: -23.69 kcal Atomic # 14 Polarization: 46.94 SS G_CDS: 2.03 Total: 48.97 kcal Atomic # 17 Polarization: 0.34 SS G_CDS: -0.08 Total: 0.26 kcal Total: -75.59 -0.32 -75.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038342333.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.357 kcal (2) G-P(sol) polarization free energy of solvation -75.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds