Wall clock time and date at job start Tue Mar 31 2020 13:35:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86805 * 119.99830 * 2 1 4 4 H 1.48502 * 109.47064 * 269.99916 * 3 2 1 5 5 H 1.48494 * 109.47252 * 30.00050 * 3 2 1 6 6 H 1.48502 * 109.46897 * 150.00328 * 3 2 1 7 7 C 1.38808 * 119.99943 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99973 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00130 * 359.97438 * 7 2 1 10 10 C 1.47069 * 136.05888 * 359.95558 * 9 7 2 11 11 C 1.53498 * 87.98828 * 152.91084 * 10 9 7 12 12 C 1.47069 * 136.06071 * 179.97438 * 9 7 2 13 13 H 1.08997 * 113.46746 * 92.24310 * 12 9 7 14 14 C 1.53002 * 113.46559 * 321.87163 * 12 9 7 15 15 N 1.46500 * 109.47466 * 74.50183 * 14 12 9 16 16 C 1.34776 * 119.99754 * 180.02562 * 15 14 12 17 17 O 1.21604 * 120.00094 * 359.97438 * 16 15 14 18 18 C 1.47392 * 119.99808 * 180.02562 * 16 15 14 19 19 C 1.41382 * 126.42179 * 270.02370 * 18 16 15 20 20 Cl 1.73602 * 126.00673 * 0.21247 * 19 18 16 21 21 N 1.30534 * 107.98929 * 179.97438 * 19 18 16 22 22 N 1.39922 * 108.89290 * 0.02562 * 21 19 18 23 23 H 0.97006 * 125.74033 * 179.97438 * 22 21 19 24 24 C 1.34235 * 108.52626 * 359.97438 * 22 21 19 25 25 C 1.50700 * 126.28186 * 179.97438 * 24 22 21 26 26 C 1.53000 * 117.49856 * 8.72669 * 25 24 22 27 27 C 1.53003 * 117.50202 * 300.06849 * 25 24 22 28 28 H 0.97002 * 119.99970 * 359.97438 * 1 2 3 29 29 H 1.09007 * 113.46268 * 267.69182 * 10 9 7 30 30 H 1.09001 * 113.46687 * 38.12671 * 10 9 7 31 31 H 1.09000 * 114.20124 * 272.47760 * 11 10 9 32 32 H 1.08997 * 114.20573 * 139.65250 * 11 10 9 33 33 H 1.09000 * 109.46979 * 314.49756 * 14 12 9 34 34 H 1.09002 * 109.47123 * 194.50316 * 14 12 9 35 35 H 0.96991 * 119.99721 * 0.02562 * 15 14 12 36 36 H 1.08997 * 115.54993 * 154.39409 * 25 24 22 37 37 H 1.09001 * 117.50149 * 359.97438 * 26 25 24 38 38 H 1.09000 * 117.50012 * 145.01887 * 26 25 24 39 39 H 1.09000 * 117.49889 * 214.97823 * 27 25 24 40 40 H 1.09001 * 117.49238 * 359.97054 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 -0.0877 -2.7948 0.0007 11 6 0.3411 -4.0920 -0.6991 12 6 1.6798 -3.8154 -0.0015 13 1 1.7472 -4.2465 0.9974 14 6 2.8975 -4.1403 -0.8691 15 7 4.1151 -3.6901 -0.1902 16 6 5.3173 -3.8723 -0.7715 17 8 5.3913 -4.4109 -1.8593 18 6 6.5424 -3.4199 -0.0883 19 6 7.1483 -2.1479 -0.2061 20 17 6.5762 -0.8315 -1.1826 21 7 8.2106 -2.1355 0.5523 22 7 8.3330 -3.3796 1.1808 23 1 9.0365 -3.6361 1.7976 24 6 7.3133 -4.1587 0.7870 25 6 7.0575 -5.5793 1.2199 26 6 7.9214 -6.1393 2.3518 27 6 8.1396 -6.6169 0.9139 28 1 -0.4850 0.8401 0.0004 29 1 -0.4926 -2.9542 1.0002 30 1 -0.7231 -2.1587 -0.6155 31 1 0.3808 -4.0212 -1.7861 32 1 -0.1735 -4.9838 -0.3416 33 1 2.8065 -3.6306 -1.8282 34 1 2.9498 -5.2166 -1.0332 35 1 4.0560 -3.2609 0.6776 36 1 6.0188 -5.9060 1.1707 37 1 8.6750 -5.4804 2.7830 38 1 7.4510 -6.8347 3.0470 39 1 7.8127 -7.6262 0.6638 40 1 9.0363 -6.2719 0.3991 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038342334.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:35:24 Heat of formation + Delta-G solvation = 117.755925 kcal Electronic energy + Delta-G solvation = -25272.891009 eV Core-core repulsion = 21539.219854 eV Total energy + Delta-G solvation = -3733.671154 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.109 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.75160 -39.07666 -37.93552 -37.56124 -36.66447 -33.94935 -32.19063 -31.60048 -30.76267 -28.03129 -27.49901 -24.37391 -23.44024 -22.95482 -22.70502 -21.64982 -21.30713 -19.77839 -19.13835 -18.11005 -16.80565 -16.31559 -16.12133 -15.82241 -15.31385 -15.18163 -14.97011 -14.49729 -14.08188 -14.02588 -13.59752 -13.07247 -12.97699 -12.57110 -12.27928 -12.06580 -11.83612 -11.69684 -11.49881 -11.25408 -11.09649 -11.08289 -10.95617 -10.75622 -10.70052 -10.53859 -10.01812 -9.80578 -9.70678 -9.49564 -9.20092 -8.81558 -8.78206 -8.53055 -6.87229 -5.73844 -3.06060 1.29033 1.44269 2.08535 2.67805 2.85540 3.35719 3.41416 3.47610 3.47950 3.68392 3.96486 4.25829 4.42751 4.46858 4.66728 4.76492 5.10218 5.11187 5.25641 5.33797 5.38757 5.43326 5.54474 5.58059 5.62732 5.70968 5.83436 5.93970 6.11554 6.34948 6.41733 6.61408 6.74171 6.74965 6.91152 7.11220 7.25551 7.41181 7.61126 7.93150 8.00932 8.57964 9.06752 9.73963 10.65431 11.43429 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.012120 B = 0.004752 C = 0.003795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2309.603170 B = 5890.679696 C = 7376.735357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.005 4.005 3 Si 0.900 3.100 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.211 4.211 8 H 0.082 0.918 9 N -0.600 5.600 10 C 0.151 3.849 11 C -0.161 4.161 12 C 0.128 3.872 13 H 0.048 0.952 14 C 0.121 3.879 15 N -0.701 5.701 16 C 0.593 3.407 17 O -0.538 6.538 18 C -0.254 4.254 19 C 0.161 3.839 20 Cl 0.031 6.969 21 N -0.276 5.276 22 N -0.450 5.450 23 H 0.444 0.556 24 C 0.170 3.830 25 C -0.104 4.104 26 C -0.171 4.171 27 C -0.157 4.157 28 H 0.252 0.748 29 H 0.024 0.976 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.057 0.943 33 H 0.073 0.927 34 H 0.060 0.940 35 H 0.404 0.596 36 H 0.137 0.863 37 H 0.093 0.907 38 H 0.111 0.889 39 H 0.110 0.890 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.379 -13.203 4.804 20.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.202 4.202 3 Si 0.730 3.270 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.338 4.338 8 H 0.100 0.900 9 N -0.326 5.326 10 C 0.025 3.975 11 C -0.200 4.200 12 C 0.020 3.980 13 H 0.065 0.935 14 C -0.003 4.003 15 N -0.351 5.351 16 C 0.376 3.624 17 O -0.415 6.415 18 C -0.269 4.269 19 C -0.031 4.031 20 Cl 0.059 6.941 21 N -0.101 5.101 22 N -0.159 5.159 23 H 0.290 0.710 24 C 0.038 3.962 25 C -0.124 4.124 26 C -0.208 4.208 27 C -0.194 4.194 28 H 0.062 0.938 29 H 0.042 0.958 30 H 0.090 0.910 31 H 0.098 0.902 32 H 0.076 0.924 33 H 0.091 0.909 34 H 0.078 0.922 35 H 0.239 0.761 36 H 0.155 0.845 37 H 0.111 0.889 38 H 0.129 0.871 39 H 0.129 0.871 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 15.351 -12.347 4.313 20.167 hybrid contribution 0.107 0.932 0.539 1.082 sum 15.458 -11.415 4.852 19.819 Atomic orbital electron populations 1.69822 1.04945 1.25180 1.56675 1.24723 0.95557 0.97284 1.02612 0.86287 0.78908 0.83942 0.77820 1.21499 1.21674 1.20360 1.18870 0.90089 0.81250 1.43576 0.90021 1.45674 1.02558 0.98562 1.85807 1.22029 0.88777 0.90202 0.96445 1.23658 0.96885 0.99014 1.00419 1.22407 0.91989 0.87858 0.95777 0.93516 1.21859 0.82918 0.98211 0.97360 1.45960 1.05548 1.60223 1.23328 1.17055 0.82171 0.78601 0.84568 1.90762 1.87011 1.43384 1.20371 1.19800 1.03169 0.94424 1.09516 1.22650 0.93902 0.90464 0.96092 1.98465 1.86021 1.43809 1.65793 1.77180 1.19495 1.00083 1.13330 1.45742 1.23036 1.09095 1.38007 0.70974 1.20313 0.88722 0.92693 0.94480 1.20701 0.99522 0.87354 1.04786 1.23079 1.02144 1.03653 0.91931 1.23117 0.99355 0.99051 0.97912 0.93765 0.95812 0.90987 0.90174 0.92399 0.90888 0.92163 0.76131 0.84503 0.88852 0.87051 0.87135 0.88276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.02 11.51 55.49 0.64 -26.39 16 2 C -0.01 -0.15 5.50 -17.43 -0.10 -0.24 16 3 Si 0.90 22.34 29.55 -169.99 -5.02 17.32 16 4 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.21 -5.63 10.55 -15.06 -0.16 -5.79 16 8 H 0.08 2.12 7.50 -52.48 -0.39 1.73 16 9 N -0.60 -14.45 3.65 -177.01 -0.65 -15.10 16 10 C 0.15 3.42 7.39 -8.51 -0.06 3.35 16 11 C -0.16 -2.86 8.03 -26.23 -0.21 -3.07 16 12 C 0.13 2.39 4.10 -72.41 -0.30 2.10 16 13 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 14 C 0.12 2.15 5.52 -4.04 -0.02 2.12 16 15 N -0.70 -12.07 5.33 -61.39 -0.33 -12.40 16 16 C 0.59 10.49 7.31 -12.53 -0.09 10.39 16 17 O -0.54 -11.10 17.11 5.27 0.09 -11.01 16 18 C -0.25 -3.97 5.88 -105.04 -0.62 -4.59 16 19 C 0.16 2.64 7.89 -16.91 -0.13 2.51 16 20 Cl 0.03 0.54 29.19 -51.86 -1.51 -0.97 16 21 N -0.28 -4.01 12.64 33.18 0.42 -3.59 16 22 N -0.45 -4.85 7.17 33.86 0.24 -4.60 16 23 H 0.44 3.02 7.95 -182.73 -1.45 1.57 16 24 C 0.17 2.02 6.80 -81.60 -0.55 1.46 16 25 C -0.10 -0.91 6.02 -91.77 -0.55 -1.47 16 26 C -0.17 -0.95 10.14 -26.69 -0.27 -1.22 16 27 C -0.16 -1.04 10.24 -26.69 -0.27 -1.32 16 28 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 29 H 0.02 0.54 8.14 -51.92 -0.42 0.12 16 30 H 0.07 1.83 7.12 -51.93 -0.37 1.46 16 31 H 0.08 1.43 8.12 -51.93 -0.42 1.01 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 34 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.40 6.87 8.36 -40.82 -0.34 6.53 16 36 H 0.14 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.09 0.40 7.16 -51.93 -0.37 0.03 16 38 H 0.11 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 360.65 15.07 5.43 5.43 Total: -1.00 -33.57 360.65 -10.32 -43.88 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -6.29 Total: 3.20 kcal Atomic # 6 Polarization: 7.57 SS G_CDS: -3.34 Total: 4.23 kcal Atomic # 7 Polarization: -62.41 SS G_CDS: 0.33 Total: -62.08 kcal Atomic # 8 Polarization: -11.10 SS G_CDS: 0.09 Total: -11.01 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Atomic # 17 Polarization: 0.54 SS G_CDS: -1.51 Total: -0.97 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.57 -10.32 -43.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038342334.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.639 kcal (2) G-P(sol) polarization free energy of solvation -33.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds