Wall clock time and date at job start Tue Mar 31 2020 13:35:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86805 * 119.99830 * 2 1 4 4 H 1.48502 * 109.47064 * 269.99916 * 3 2 1 5 5 H 1.48494 * 109.47252 * 30.00050 * 3 2 1 6 6 H 1.48502 * 109.46897 * 150.00328 * 3 2 1 7 7 C 1.38808 * 119.99943 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99973 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00130 * 359.97438 * 7 2 1 10 10 C 1.47069 * 136.05888 * 359.95558 * 9 7 2 11 11 C 1.53498 * 87.98828 * 152.91084 * 10 9 7 12 12 C 1.47069 * 136.06071 * 179.97438 * 9 7 2 13 13 H 1.08997 * 113.46746 * 92.24310 * 12 9 7 14 14 C 1.53002 * 113.46559 * 321.87163 * 12 9 7 15 15 N 1.46500 * 109.47466 * 74.50183 * 14 12 9 16 16 C 1.34776 * 119.99754 * 180.02562 * 15 14 12 17 17 O 1.21604 * 120.00094 * 359.97438 * 16 15 14 18 18 C 1.47392 * 119.99808 * 180.02562 * 16 15 14 19 19 C 1.41382 * 126.42179 * 270.02370 * 18 16 15 20 20 Cl 1.73602 * 126.00673 * 0.21247 * 19 18 16 21 21 N 1.30534 * 107.98929 * 179.97438 * 19 18 16 22 22 N 1.39922 * 108.89290 * 0.02562 * 21 19 18 23 23 H 0.97006 * 125.74033 * 179.97438 * 22 21 19 24 24 C 1.34235 * 108.52626 * 359.97438 * 22 21 19 25 25 C 1.50700 * 126.28186 * 179.97438 * 24 22 21 26 26 C 1.53000 * 117.49856 * 8.72669 * 25 24 22 27 27 C 1.53003 * 117.50202 * 300.06849 * 25 24 22 28 28 H 0.97002 * 119.99970 * 359.97438 * 1 2 3 29 29 H 1.09007 * 113.46268 * 267.69182 * 10 9 7 30 30 H 1.09001 * 113.46687 * 38.12671 * 10 9 7 31 31 H 1.09000 * 114.20124 * 272.47760 * 11 10 9 32 32 H 1.08997 * 114.20573 * 139.65250 * 11 10 9 33 33 H 1.09000 * 109.46979 * 314.49756 * 14 12 9 34 34 H 1.09002 * 109.47123 * 194.50316 * 14 12 9 35 35 H 0.96991 * 119.99721 * 0.02562 * 15 14 12 36 36 H 1.08997 * 115.54993 * 154.39409 * 25 24 22 37 37 H 1.09001 * 117.50149 * 359.97438 * 26 25 24 38 38 H 1.09000 * 117.50012 * 145.01887 * 26 25 24 39 39 H 1.09000 * 117.49889 * 214.97823 * 27 25 24 40 40 H 1.09001 * 117.49238 * 359.97054 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 -0.0877 -2.7948 0.0007 11 6 0.3411 -4.0920 -0.6991 12 6 1.6798 -3.8154 -0.0015 13 1 1.7472 -4.2465 0.9974 14 6 2.8975 -4.1403 -0.8691 15 7 4.1151 -3.6901 -0.1902 16 6 5.3173 -3.8723 -0.7715 17 8 5.3913 -4.4109 -1.8593 18 6 6.5424 -3.4199 -0.0883 19 6 7.1483 -2.1479 -0.2061 20 17 6.5762 -0.8315 -1.1826 21 7 8.2106 -2.1355 0.5523 22 7 8.3330 -3.3796 1.1808 23 1 9.0365 -3.6361 1.7976 24 6 7.3133 -4.1587 0.7870 25 6 7.0575 -5.5793 1.2199 26 6 7.9214 -6.1393 2.3518 27 6 8.1396 -6.6169 0.9139 28 1 -0.4850 0.8401 0.0004 29 1 -0.4926 -2.9542 1.0002 30 1 -0.7231 -2.1587 -0.6155 31 1 0.3808 -4.0212 -1.7861 32 1 -0.1735 -4.9838 -0.3416 33 1 2.8065 -3.6306 -1.8282 34 1 2.9498 -5.2166 -1.0332 35 1 4.0560 -3.2609 0.6776 36 1 6.0188 -5.9060 1.1707 37 1 8.6750 -5.4804 2.7830 38 1 7.4510 -6.8347 3.0470 39 1 7.8127 -7.6262 0.6638 40 1 9.0363 -6.2719 0.3991 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038342334.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:35:24 Heat of formation + Delta-G solvation = 94.465931 kcal Electronic energy + Delta-G solvation = -25273.900939 eV Core-core repulsion = 21539.219854 eV Total energy + Delta-G solvation = -3734.681084 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.109 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.79999 -40.55553 -39.53518 -38.30574 -37.79357 -35.43796 -34.20962 -32.68434 -31.84234 -29.91883 -29.00645 -25.36336 -25.32502 -24.04954 -23.40907 -22.91115 -22.41812 -21.19719 -20.66046 -19.20675 -18.45404 -17.56192 -17.22050 -17.06320 -16.84318 -16.40738 -16.13899 -15.96213 -15.56196 -15.44245 -14.99713 -14.52820 -14.49214 -13.63700 -13.48313 -13.41488 -13.24441 -12.95654 -12.76527 -12.70845 -12.55272 -12.48156 -12.29453 -12.14806 -11.91118 -11.82965 -11.59892 -11.47409 -11.30535 -10.87749 -10.78721 -10.55580 -9.99368 -9.87626 -8.84615 -7.85157 -5.14940 0.29117 0.31408 0.90286 1.41760 1.43631 1.48260 1.50356 1.73489 2.34862 2.49117 2.80393 3.23102 3.37931 3.47868 3.62737 3.64238 3.89411 3.95428 4.00782 4.03638 4.21384 4.39468 4.42496 4.60943 4.70427 4.71597 4.76309 4.93495 4.94366 5.02065 5.10901 5.15843 5.16077 5.38264 5.47125 5.64080 5.79970 5.87165 6.01399 6.12686 6.54389 6.98371 7.20277 7.68199 8.67394 9.32611 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.012120 B = 0.004752 C = 0.003795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2309.603170 B = 5890.679696 C = 7376.735357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.065 4.065 3 Si 0.949 3.051 4 H -0.294 1.294 5 H -0.295 1.295 6 H -0.267 1.267 7 C -0.197 4.197 8 H 0.084 0.916 9 N -0.629 5.629 10 C 0.142 3.858 11 C -0.133 4.133 12 C 0.134 3.866 13 H 0.072 0.928 14 C 0.129 3.871 15 N -0.698 5.698 16 C 0.600 3.400 17 O -0.573 6.573 18 C -0.292 4.292 19 C 0.145 3.855 20 Cl 0.010 6.990 21 N -0.289 5.289 22 N -0.426 5.426 23 H 0.464 0.536 24 C 0.200 3.800 25 C -0.135 4.135 26 C -0.144 4.144 27 C -0.152 4.152 28 H 0.244 0.756 29 H 0.023 0.977 30 H 0.034 0.966 31 H 0.078 0.922 32 H 0.102 0.898 33 H 0.042 0.958 34 H 0.087 0.913 35 H 0.406 0.594 36 H 0.133 0.867 37 H 0.111 0.889 38 H 0.129 0.871 39 H 0.121 0.879 40 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.254 -15.930 6.512 23.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.258 4.258 3 Si 0.779 3.221 4 H -0.221 1.221 5 H -0.222 1.222 6 H -0.192 1.192 7 C -0.325 4.325 8 H 0.102 0.898 9 N -0.355 5.355 10 C 0.016 3.984 11 C -0.171 4.171 12 C 0.028 3.972 13 H 0.090 0.910 14 C 0.005 3.995 15 N -0.346 5.346 16 C 0.385 3.615 17 O -0.452 6.452 18 C -0.308 4.308 19 C -0.046 4.046 20 Cl 0.037 6.963 21 N -0.115 5.115 22 N -0.137 5.137 23 H 0.314 0.686 24 C 0.066 3.934 25 C -0.155 4.155 26 C -0.181 4.181 27 C -0.189 4.189 28 H 0.053 0.947 29 H 0.041 0.959 30 H 0.053 0.947 31 H 0.097 0.903 32 H 0.120 0.880 33 H 0.060 0.940 34 H 0.105 0.895 35 H 0.241 0.759 36 H 0.151 0.849 37 H 0.129 0.871 38 H 0.147 0.853 39 H 0.140 0.860 40 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 17.274 -15.100 6.055 23.729 hybrid contribution -0.401 1.614 0.066 1.664 sum 16.873 -13.486 6.121 22.451 Atomic orbital electron populations 1.69981 1.06043 1.24936 1.59277 1.25352 0.96236 0.99930 1.04285 0.85494 0.78263 0.81057 0.77323 1.22116 1.22158 1.19217 1.19142 0.90425 0.82477 1.40481 0.89783 1.45992 1.03706 1.00058 1.85756 1.22060 0.87745 0.92190 0.96375 1.23469 0.95689 0.98034 0.99944 1.22578 0.92923 0.84621 0.97066 0.91024 1.21698 0.82863 0.99371 0.95610 1.45938 1.05456 1.60009 1.23244 1.17246 0.82691 0.77582 0.83967 1.90732 1.87550 1.45083 1.21884 1.19712 1.03731 0.95170 1.12154 1.22654 0.94851 0.90279 0.96860 1.98444 1.86377 1.44889 1.66548 1.77103 1.18985 1.01848 1.13523 1.45720 1.23072 1.07723 1.37212 0.68583 1.20645 0.87185 0.93496 0.92037 1.20825 1.00319 0.85826 1.08500 1.23273 1.00649 1.02850 0.91329 1.23243 0.98046 0.98644 0.98995 0.94702 0.95896 0.94716 0.90322 0.88007 0.93984 0.89452 0.75935 0.84918 0.87109 0.85296 0.86030 0.88196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.75 11.51 21.65 0.25 -57.50 16 2 C -0.07 -3.74 5.50 84.86 0.47 -3.27 16 3 Si 0.95 46.96 29.55 68.60 2.03 48.99 16 4 H -0.29 -14.63 7.11 99.48 0.71 -13.92 16 5 H -0.29 -14.67 7.11 99.48 0.71 -13.96 16 6 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 7 C -0.20 -10.61 10.55 84.03 0.89 -9.73 16 8 H 0.08 4.40 7.50 -2.91 -0.02 4.37 16 9 N -0.63 -30.16 3.65 -713.95 -2.61 -32.77 16 10 C 0.14 6.40 7.39 83.17 0.61 7.01 16 11 C -0.13 -4.41 8.03 30.92 0.25 -4.17 16 12 C 0.13 4.77 4.10 41.78 0.17 4.94 16 13 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 14 C 0.13 4.40 5.52 86.38 0.48 4.88 16 15 N -0.70 -23.39 5.33 -466.40 -2.49 -25.88 16 16 C 0.60 20.97 7.31 86.65 0.63 21.60 16 17 O -0.57 -23.60 17.11 -4.04 -0.07 -23.67 16 18 C -0.29 -8.93 5.88 -20.13 -0.12 -9.04 16 19 C 0.15 4.71 7.89 85.66 0.68 5.38 16 20 Cl 0.01 0.34 29.19 -2.72 -0.08 0.26 16 21 N -0.29 -8.06 12.64 -48.95 -0.62 -8.68 16 22 N -0.43 -8.11 7.17 -46.79 -0.34 -8.45 16 23 H 0.46 4.67 7.95 -213.43 -1.70 2.97 16 24 C 0.20 4.33 6.80 42.15 0.29 4.62 16 25 C -0.13 -1.97 6.02 -11.54 -0.07 -2.04 16 26 C -0.14 -0.97 10.14 30.62 0.31 -0.65 16 27 C -0.15 -1.48 10.24 30.62 0.31 -1.16 16 28 H 0.24 14.58 8.31 -92.71 -0.77 13.81 16 29 H 0.02 1.04 8.14 -2.38 -0.02 1.02 16 30 H 0.03 1.81 7.12 -2.39 -0.02 1.79 16 31 H 0.08 2.67 8.12 -2.39 -0.02 2.65 16 32 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 33 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 35 H 0.41 13.37 8.36 -92.72 -0.77 12.60 16 36 H 0.13 2.10 8.14 -2.39 -0.02 2.08 16 37 H 0.11 0.37 7.16 -2.39 -0.02 0.36 16 38 H 0.13 0.50 8.14 -2.39 -0.02 0.48 16 39 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -75.61 360.65 -0.39 -76.00 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: -1.37 Total: 13.32 kcal Atomic # 6 Polarization: 13.47 SS G_CDS: 4.90 Total: 18.37 kcal Atomic # 7 Polarization: -127.47 SS G_CDS: -5.80 Total: -133.27 kcal Atomic # 8 Polarization: -23.60 SS G_CDS: -0.07 Total: -23.67 kcal Atomic # 14 Polarization: 46.96 SS G_CDS: 2.03 Total: 48.99 kcal Atomic # 17 Polarization: 0.34 SS G_CDS: -0.08 Total: 0.26 kcal Total: -75.61 -0.39 -76.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038342334.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.468 kcal (2) G-P(sol) polarization free energy of solvation -75.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.002 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds