Wall clock time and date at job start Tue Mar 31 2020 13:35:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 120.00467 * 2 1 4 4 H 1.48499 * 109.46896 * 270.00102 * 3 2 1 5 5 H 1.48506 * 109.46723 * 29.99872 * 3 2 1 6 6 H 1.48496 * 109.47378 * 149.99559 * 3 2 1 7 7 C 1.38817 * 119.99557 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99679 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00320 * 0.02562 * 7 2 1 10 10 C 1.47067 * 136.05300 * 359.62314 * 9 7 2 11 11 C 1.53503 * 87.98291 * 207.38069 * 10 9 7 12 12 C 1.47066 * 136.06113 * 179.97438 * 9 7 2 13 13 H 1.09001 * 113.46506 * 267.40214 * 12 9 7 14 14 C 1.53001 * 113.46558 * 37.83696 * 12 9 7 15 15 N 1.46504 * 109.46966 * 285.49627 * 14 12 9 16 16 C 1.34779 * 119.99668 * 180.02562 * 15 14 12 17 17 O 1.21576 * 120.00036 * 359.97438 * 16 15 14 18 18 C 1.47662 * 119.99935 * 180.02562 * 16 15 14 19 19 N 1.31828 * 126.45893 * 0.02562 * 18 16 15 20 20 N 1.28476 * 110.13236 * 180.02562 * 19 18 16 21 21 H 0.97004 * 124.93134 * 179.97438 * 20 19 18 22 22 C 1.35638 * 110.13255 * 0.02562 * 20 19 18 23 23 C 1.50696 * 126.43285 * 180.02562 * 22 20 19 24 24 C 1.53005 * 117.50045 * 8.59045 * 23 22 20 25 25 C 1.53004 * 60.00130 * 252.51273 * 24 23 22 26 26 C 1.35460 * 107.13317 * 359.71960 * 22 20 19 27 27 Cl 1.73598 * 127.24103 * 180.25747 * 26 22 20 28 28 H 0.96999 * 119.99537 * 0.02562 * 1 2 3 29 29 H 1.09003 * 113.46750 * 322.15715 * 10 9 7 30 30 H 1.09000 * 113.47312 * 92.60160 * 10 9 7 31 31 H 1.08996 * 114.20600 * 220.34475 * 11 10 9 32 32 H 1.08998 * 114.38368 * 87.53582 * 11 10 9 33 33 H 1.09002 * 109.47370 * 45.49563 * 14 12 9 34 34 H 1.09003 * 109.46961 * 165.49707 * 14 12 9 35 35 H 0.96999 * 120.00354 * 0.02562 * 15 14 12 36 36 H 1.09004 * 115.55323 * 154.29772 * 23 22 20 37 37 H 1.08999 * 117.49649 * 0.02562 * 24 23 22 38 38 H 1.08995 * 117.50050 * 145.02045 * 24 23 22 39 39 H 1.09001 * 117.49532 * 252.51462 * 25 24 23 40 40 H 1.08998 * 117.49851 * 107.48554 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0901 -1.2023 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.0878 -2.7948 0.0068 11 6 0.3445 -4.0911 0.7061 12 6 1.6797 -3.8155 0.0005 13 1 1.7403 -4.2477 -0.9983 14 6 2.9022 -4.1398 0.8615 15 7 4.1160 -3.6902 0.1751 16 6 5.3216 -3.8729 0.7492 17 8 5.4019 -4.4105 1.8367 18 6 6.5449 -3.4192 0.0578 19 7 6.6058 -2.8240 -1.1169 20 7 7.8276 -2.5664 -1.4193 21 1 8.1178 -2.1314 -2.2363 22 6 8.6530 -2.9921 -0.4307 23 6 10.1551 -2.8741 -0.4060 24 6 10.8162 -2.0372 -1.5031 25 6 10.9363 -3.5623 -1.5273 26 6 7.8729 -3.5371 0.5334 27 17 8.3928 -4.2367 2.0347 28 1 -0.4849 0.8401 -0.0004 29 1 -0.7200 -2.1579 0.6255 30 1 -0.4978 -2.9554 -0.9903 31 1 -0.1719 -4.9834 0.3522 32 1 0.3904 -4.0224 1.7929 33 1 2.8169 -3.6293 1.8207 34 1 2.9555 -5.2160 1.0261 35 1 4.0519 -3.2609 -0.6924 36 1 10.6090 -2.8543 0.5848 37 1 10.1645 -1.5716 -2.2424 38 1 11.7049 -1.4665 -1.2341 39 1 11.9042 -3.9949 -1.2741 40 1 10.3637 -4.1003 -2.2827 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038448834.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:35:15 Heat of formation + Delta-G solvation = 95.112937 kcal Electronic energy + Delta-G solvation = -24759.522848 eV Core-core repulsion = 21024.869820 eV Total energy + Delta-G solvation = -3734.653028 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.109 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.96457 -40.68776 -39.62517 -38.17351 -37.53568 -35.52953 -34.24350 -32.98586 -31.71160 -29.96665 -29.23507 -25.54996 -25.38086 -24.43349 -23.34243 -23.05999 -22.25699 -21.32308 -20.75239 -19.02690 -18.72262 -17.89043 -17.30242 -17.14446 -16.93632 -16.52023 -16.03865 -15.83861 -15.63689 -15.52085 -14.96078 -14.74474 -14.50571 -13.62998 -13.52728 -13.33003 -13.16114 -12.97917 -12.69505 -12.58997 -12.52632 -12.45655 -12.34547 -12.02725 -11.87705 -11.79551 -11.62071 -11.48984 -11.28440 -10.91447 -10.81234 -10.54909 -9.99578 -9.76915 -8.87826 -7.87165 -5.18046 0.29275 0.62883 0.95458 1.41076 1.42966 1.50820 1.77277 2.13852 2.24458 2.46791 2.86094 3.19975 3.35049 3.35256 3.47629 3.61308 3.90340 3.94163 3.99841 4.02950 4.18024 4.36427 4.45649 4.61688 4.67287 4.72707 4.73587 4.90646 4.97542 5.05656 5.08038 5.11135 5.18163 5.34160 5.40818 5.60317 5.76063 5.79745 5.98606 6.37097 6.62738 6.95511 7.11655 7.64778 8.64758 9.30464 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.013716 B = 0.003644 C = 0.003148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2040.873985 B = 7682.902023 C = 8892.283595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.069 4.069 3 Si 0.966 3.034 4 H -0.284 1.284 5 H -0.296 1.296 6 H -0.278 1.278 7 C -0.204 4.204 8 H 0.081 0.919 9 N -0.629 5.629 10 C 0.143 3.857 11 C -0.132 4.132 12 C 0.132 3.868 13 H 0.068 0.932 14 C 0.130 3.870 15 N -0.698 5.698 16 C 0.591 3.409 17 O -0.554 6.554 18 C -0.017 4.017 19 N -0.248 5.248 20 N -0.355 5.355 21 H 0.466 0.534 22 C 0.085 3.915 23 C -0.115 4.115 24 C -0.159 4.159 25 C -0.152 4.152 26 C -0.123 4.123 27 Cl -0.012 7.012 28 H 0.245 0.755 29 H 0.036 0.964 30 H 0.023 0.977 31 H 0.101 0.899 32 H 0.081 0.919 33 H 0.047 0.953 34 H 0.086 0.914 35 H 0.409 0.591 36 H 0.138 0.862 37 H 0.103 0.897 38 H 0.125 0.875 39 H 0.123 0.877 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.322 -8.838 -5.177 24.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.261 4.261 3 Si 0.795 3.205 4 H -0.211 1.211 5 H -0.222 1.222 6 H -0.204 1.204 7 C -0.333 4.333 8 H 0.099 0.901 9 N -0.355 5.355 10 C 0.018 3.982 11 C -0.171 4.171 12 C 0.026 3.974 13 H 0.085 0.915 14 C 0.006 3.994 15 N -0.348 5.348 16 C 0.375 3.625 17 O -0.431 6.431 18 C -0.178 4.178 19 N -0.085 5.085 20 N -0.074 5.074 21 H 0.316 0.684 22 C -0.042 4.042 23 C -0.135 4.135 24 C -0.196 4.196 25 C -0.189 4.189 26 C -0.161 4.161 27 Cl 0.017 6.983 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.041 0.959 31 H 0.119 0.881 32 H 0.099 0.901 33 H 0.065 0.935 34 H 0.104 0.896 35 H 0.244 0.756 36 H 0.156 0.844 37 H 0.121 0.879 38 H 0.143 0.857 39 H 0.142 0.858 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 21.726 -8.568 -5.112 23.908 hybrid contribution 0.439 1.350 0.007 1.420 sum 22.165 -7.218 -5.105 23.863 Atomic orbital electron populations 1.70001 1.06145 1.25160 1.58902 1.25474 0.96413 1.00310 1.03952 0.85255 0.77490 0.80264 0.77452 1.21109 1.22226 1.20356 1.19150 0.90342 0.82627 1.41153 0.90115 1.45990 1.03738 0.99980 1.85839 1.22048 0.87654 0.92144 0.96370 1.23480 0.95456 0.98099 1.00029 1.22584 0.93022 0.84833 0.96983 0.91458 1.21718 0.82694 0.99390 0.95632 1.45814 1.05365 1.60097 1.23498 1.17069 0.82224 0.78828 0.84398 1.90774 1.86739 1.44745 1.20804 1.21775 0.94348 1.07197 0.94450 1.73687 1.03519 1.16094 1.15157 1.43237 1.01937 1.43525 1.18670 0.68403 1.20514 0.94250 1.00531 0.88928 1.20641 0.83632 1.10375 0.98841 1.23225 1.03317 0.94296 0.98765 1.23222 1.01966 0.95473 0.98269 1.20549 0.91759 1.10120 0.93640 1.98336 1.89627 1.82285 1.28077 0.94553 0.94504 0.95932 0.88069 0.90063 0.93462 0.89594 0.75574 0.84439 0.87878 0.85675 0.85840 0.88387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.06 11.51 21.65 0.25 -57.81 16 2 C -0.07 -3.96 5.50 84.86 0.47 -3.50 16 3 Si 0.97 46.98 29.55 68.60 2.03 49.01 16 4 H -0.28 -13.40 7.11 99.48 0.71 -12.70 16 5 H -0.30 -14.51 7.11 99.48 0.71 -13.80 16 6 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 7 C -0.20 -11.30 10.55 84.03 0.89 -10.41 16 8 H 0.08 4.36 7.51 -2.91 -0.02 4.33 16 9 N -0.63 -31.24 3.65 -713.85 -2.61 -33.85 16 10 C 0.14 6.65 7.39 83.18 0.61 7.27 16 11 C -0.13 -4.60 8.03 30.94 0.25 -4.35 16 12 C 0.13 5.01 4.10 41.80 0.17 5.18 16 13 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 14 C 0.13 4.76 5.52 86.38 0.48 5.24 16 15 N -0.70 -25.74 5.33 -466.13 -2.48 -28.22 16 16 C 0.59 22.38 7.82 86.73 0.68 23.06 16 17 O -0.55 -23.30 15.87 -3.96 -0.06 -23.36 16 18 C -0.02 -0.55 7.13 42.45 0.30 -0.24 16 19 N -0.25 -7.05 11.91 -48.17 -0.57 -7.62 16 20 N -0.36 -6.96 6.76 -47.56 -0.32 -7.28 16 21 H 0.47 5.21 7.94 -219.98 -1.75 3.46 16 22 C 0.09 1.73 6.75 41.33 0.28 2.01 16 23 C -0.12 -1.44 6.13 -11.54 -0.07 -1.51 16 24 C -0.16 -1.04 10.15 30.60 0.31 -0.73 16 25 C -0.15 -1.15 10.23 30.60 0.31 -0.84 16 26 C -0.12 -3.49 6.79 22.44 0.15 -3.34 16 27 Cl -0.01 -0.33 28.02 -2.72 -0.08 -0.41 16 28 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 29 H 0.04 1.95 7.13 -2.39 -0.02 1.94 16 30 H 0.02 1.05 8.14 -2.39 -0.02 1.04 16 31 H 0.10 2.73 8.14 -2.39 -0.02 2.71 16 32 H 0.08 2.84 8.12 -2.39 -0.02 2.82 16 33 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.09 2.76 8.14 -2.39 -0.02 2.74 16 35 H 0.41 15.00 8.10 -92.71 -0.75 14.25 16 36 H 0.14 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.10 0.47 7.16 -2.39 -0.02 0.45 16 38 H 0.13 0.48 8.14 -2.39 -0.02 0.46 16 39 H 0.12 0.59 8.14 -2.39 -0.02 0.57 16 40 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 Total: -1.00 -74.86 357.56 -0.42 -75.28 By element: Atomic # 1 Polarization: 17.83 SS G_CDS: -1.40 Total: 16.43 kcal Atomic # 6 Polarization: 13.00 SS G_CDS: 4.83 Total: 17.83 kcal Atomic # 7 Polarization: -129.05 SS G_CDS: -5.74 Total: -134.78 kcal Atomic # 8 Polarization: -23.30 SS G_CDS: -0.06 Total: -23.36 kcal Atomic # 14 Polarization: 46.98 SS G_CDS: 2.03 Total: 49.01 kcal Atomic # 17 Polarization: -0.33 SS G_CDS: -0.08 Total: -0.41 kcal Total: -74.86 -0.42 -75.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038448834.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.391 kcal (2) G-P(sol) polarization free energy of solvation -74.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds